Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:46:47 (1489442): wrapper (7.7.26015): starting
20:46:47 (1489442): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 20:46:47] Arguments: --nthreads 4
[2026-02-04 20:46:47] Threads: 4
[2026-02-04 20:46:47] Checking for CVMFS
[2026-02-04 20:46:47] No cvmfs_config command found, will try listing directly
[2026-02-04 20:46:47] CVMFS is ok
[2026-02-04 20:46:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 20:46:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 20:46:47] Further information can be found at the LHC@home message board.
[2026-02-04 20:46:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 20:46:47] Checking for apptainer binary...
[2026-02-04 20:46:47] which: no apptainer in ((null))
[2026-02-04 20:46:47] apptainer is not installed, using version from CVMFS
[2026-02-04 20:46:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 20:46:47] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-02-04 20:46:47] apptainer works
[2026-02-04 20:46:47] Set ATHENA_PROC_NUMBER=4
[2026-02-04 20:46:47] Set ATHENA_CORE_NUMBER=4
[2026-02-04 20:46:47] Starting ATLAS job with PandaID=6999842496
[2026-02-04 20:46:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-05 00:32:37]  *** The last 200 lines of the pilot log: ***
[2026-02-05 00:32:37] 2026-02-04 23:25:49,853 | INFO     | reading metadata from: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6999842496/jobReport.json
[2026-02-05 00:32:37] 2026-02-04 23:25:49,855 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot32/slots/0/workernode_map.json
[2026-02-05 00:32:37] 2026-02-04 23:25:49,856 | INFO     | this job has now completed (state=finished)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,856 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,856 | INFO     | log transfer has been attempted: DONE
[2026-02-05 00:32:37] 2026-02-04 23:25:49,856 | INFO     | job 6999842496 has finished - writing final server update
[2026-02-05 00:32:37] 2026-02-04 23:25:49,857 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_331631/.job.ad'
[2026-02-05 00:32:37] 2026-02-04 23:25:49,857 | INFO     | total number of processed events: 400 (read)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,865 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6999842496/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,865 | INFO     | extracted standard info from prmon json
[2026-02-05 00:32:37] 2026-02-04 23:25:49,865 | INFO     | extracted standard memory fields from prmon json
[2026-02-05 00:32:37] 2026-02-04 23:25:49,866 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-05 00:32:37] 2026-02-04 23:25:49,866 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-05 00:32:37] 2026-02-04 23:25:49,866 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-05 00:32:37] 2026-02-04 23:25:49,870 | INFO     | fitting pss+swap vs Time
[2026-02-05 00:32:37] 2026-02-04 23:25:49,871 | INFO     | sum of square deviations: 3081657780.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,872 | INFO     | sum of deviations: -22439989114.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,872 | INFO     | mean x: 1770240971.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,873 | INFO     | mean y: 2363437.3906976744
[2026-02-05 00:32:37] 2026-02-04 23:25:49,873 | INFO     | intersect: 12892888912.414984
[2026-02-05 00:32:37] 2026-02-04 23:25:49,873 | INFO     | chi2: 1.5838274261546992
[2026-02-05 00:32:37] 2026-02-04 23:25:49,873 | INFO     | sum of square deviations: 2871616632.5
[2026-02-05 00:32:37] 2026-02-04 23:25:49,875 | INFO     | sum of deviations: -21755449554.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,875 | INFO     | mean x: 1770240818.5
[2026-02-05 00:32:37] 2026-02-04 23:25:49,875 | INFO     | mean y: 2363934.7523809522
[2026-02-05 00:32:37] 2026-02-04 23:25:49,875 | INFO     | intersect: 13413758892.365484
[2026-02-05 00:32:37] 2026-02-04 23:25:49,876 | INFO     | chi2: 1.581647267898526
[2026-02-05 00:32:37] 2026-02-04 23:25:49,876 | INFO     | current chi2=1.581647267898526 (change=0.1376512503932471 %)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,876 | INFO     | right removable region: 209
[2026-02-05 00:32:37] 2026-02-04 23:25:49,876 | INFO     | sum of square deviations: 2871616632.5
[2026-02-05 00:32:37] 2026-02-04 23:25:49,878 | INFO     | sum of deviations: -44512597920.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,878 | INFO     | mean x: 1770241123.5
[2026-02-05 00:32:37] 2026-02-04 23:25:49,878 | INFO     | mean y: 2379199.8
[2026-02-05 00:32:37] 2026-02-04 23:25:49,878 | INFO     | intersect: 27442682497.94736
[2026-02-05 00:32:37] 2026-02-04 23:25:49,879 | INFO     | chi2: 0.35479896374393194
[2026-02-05 00:32:37] 2026-02-04 23:25:49,879 | INFO     | current chi2=0.35479896374393194 (change=77.59863493427868 %)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,879 | INFO     | sum of square deviations: 2671343110.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,880 | INFO     | sum of deviations: -35895454331.00001
[2026-02-05 00:32:37] 2026-02-04 23:25:49,881 | INFO     | mean x: 1770241276.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,881 | INFO     | mean y: 2372615.531707317
[2026-02-05 00:32:37] 2026-02-04 23:25:49,881 | INFO     | intersect: 23789513488.46479
[2026-02-05 00:32:37] 2026-02-04 23:25:49,881 | INFO     | chi2: 0.32593196805468583
[2026-02-05 00:32:37] 2026-02-04 23:25:49,881 | INFO     | current chi2=0.32593196805468583 (change=8.136155580792567 %)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,882 | INFO     | left removable region: 20
[2026-02-05 00:32:37] 2026-02-04 23:25:49,882 | INFO     | sum of square deviations: 2093397390.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,883 | INFO     | sum of deviations: -13095536425.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,883 | INFO     | mean x: 1770241398.0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,883 | INFO     | mean y: 2354629.301587302
[2026-02-05 00:32:37] 2026-02-04 23:25:49,884 | INFO     | intersect: 11076344125.654177
[2026-02-05 00:32:37] 2026-02-04 23:25:49,884 | INFO     | chi2: 0.1730847667376833
[2026-02-05 00:32:37] 2026-02-04 23:25:49,884 | INFO     | current memory leak: -6.26 B/s (using 189 data points, chi2=0.17)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,885 | INFO     | could have reported an average CPU frequency of 2579 MHz (11 samples)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,885 | INFO     | ..............................
[2026-02-05 00:32:37] 2026-02-04 23:25:49,885 | INFO     | . Timing measurements:
[2026-02-05 00:32:37] 2026-02-04 23:25:49,885 | INFO     | . get job = 0 s
[2026-02-05 00:32:37] 2026-02-04 23:25:49,885 | INFO     | . initial setup = 5 s
[2026-02-05 00:32:37] 2026-02-04 23:25:49,885 | INFO     | . payload setup = 5 s
[2026-02-05 00:32:37] 2026-02-04 23:25:49,886 | INFO     | . stage-in = 0 s
[2026-02-05 00:32:37] 2026-02-04 23:25:49,886 | INFO     | . payload execution = 13100 s
[2026-02-05 00:32:37] 2026-02-04 23:25:49,886 | INFO     | . stage-out = 1 s
[2026-02-05 00:32:37] 2026-02-04 23:25:49,886 | INFO     | . log creation = 0 s
[2026-02-05 00:32:37] 2026-02-04 23:25:49,886 | INFO     | ..............................
[2026-02-05 00:32:37] 2026-02-04 23:25:49,988 | INFO     | 
[2026-02-05 00:32:37] 2026-02-04 23:25:49,989 | INFO     | job summary report
[2026-02-05 00:32:37] 2026-02-04 23:25:49,989 | INFO     | --------------------------------------------------
[2026-02-05 00:32:37] 2026-02-04 23:25:49,989 | INFO     | PanDA job id: 6999842496
[2026-02-05 00:32:37] 2026-02-04 23:25:49,989 | INFO     | task id: 48317892
[2026-02-05 00:32:37] 2026-02-04 23:25:49,989 | INFO     | errors: (none)
[2026-02-05 00:32:37] 2026-02-04 23:25:49,989 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-05 00:32:37] 2026-02-04 23:25:49,989 | INFO     | pilot state: finished 
[2026-02-05 00:32:37] 2026-02-04 23:25:49,990 | INFO     | transexitcode: 0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,990 | INFO     | exeerrorcode: 0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,990 | INFO     | exeerrordiag: 
[2026-02-05 00:32:37] 2026-02-04 23:25:49,990 | INFO     | exitcode: 0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,990 | INFO     | exitmsg: OK
[2026-02-05 00:32:37] 2026-02-04 23:25:49,990 | INFO     | cpuconsumptiontime: 50272 s
[2026-02-05 00:32:37] 2026-02-04 23:25:49,990 | INFO     | nevents: 400
[2026-02-05 00:32:37] 2026-02-04 23:25:49,990 | INFO     | neventsw: 0
[2026-02-05 00:32:37] 2026-02-04 23:25:49,991 | INFO     | pid: 1498567
[2026-02-05 00:32:37] 2026-02-04 23:25:49,991 | INFO     | pgrp: 1498567
[2026-02-05 00:32:37] 2026-02-04 23:25:49,991 | INFO     | corecount: 4
[2026-02-05 00:32:37] 2026-02-04 23:25:49,991 | INFO     | event service: False
[2026-02-05 00:32:37] 2026-02-04 23:25:49,991 | INFO     | sizes: {0: 2277083, 1: 2278212, 12: 2278212, 13109: 2308374, 13112: 2317394, 13115: 2317772}
[2026-02-05 00:32:37] 2026-02-04 23:25:49,991 | INFO     | --------------------------------------------------
[2026-02-05 00:32:37] 2026-02-04 23:25:49,991 | INFO     | 
[2026-02-05 00:32:37] 2026-02-04 23:25:49,991 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2026-02-05 00:32:37] 2026-02-04 23:25:50,012 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,012 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,012 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,012 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,013 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,013 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,013 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,013 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,013 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,014 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,014 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,014 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,014 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,014 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,014 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,014 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-05 00:32:37] 2026-02-04 23:25:50,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,015 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-05 00:32:37] 2026-02-04 23:25:50,015 | INFO     | job 6999842496 has completed (purged errors)
[2026-02-05 00:32:37] 2026-02-04 23:25:50,015 | INFO     | overall cleanup function is called
[2026-02-05 00:32:37] 2026-02-04 23:25:51,023 | INFO     | --- collectZombieJob: --- 10, [1498567]
[2026-02-05 00:32:37] 2026-02-04 23:25:51,023 | INFO     | zombie collector waiting for pid 1498567
[2026-02-05 00:32:37] 2026-02-04 23:25:51,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-05 00:32:37] 2026-02-04 23:25:51,023 | INFO     | collected zombie processes
[2026-02-05 00:32:37] 2026-02-04 23:25:51,024 | INFO     | will attempt to kill all subprocesses of pid=1498567
[2026-02-05 00:32:37] 2026-02-04 23:25:51,338 | INFO     | process IDs to be killed: [1498567] (in reverse order)
[2026-02-05 00:32:37] 2026-02-04 23:25:51,421 | WARNING  | found no corresponding commands to process id(s)
[2026-02-05 00:32:37] 2026-02-04 23:25:51,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-05 00:32:37] 2026-02-04 23:25:51,430 | INFO     | did not find any defunct processes belonging to 1498567
[2026-02-05 00:32:37] 2026-02-04 23:25:51,438 | INFO     | did not find any defunct processes belonging to 1498567
[2026-02-05 00:32:37] 2026-02-04 23:25:51,439 | INFO     | ready for new job
[2026-02-05 00:32:37] 2026-02-04 23:25:51,439 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-05 00:32:37] 2026-02-04 23:25:51,441 | INFO     | **************************************
[2026-02-05 00:32:37] 2026-02-04 23:25:51,441 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-05 00:32:37] 2026-02-04 23:25:51,441 | INFO     | **************************************
[2026-02-05 00:32:37] 2026-02-04 23:25:51,442 | INFO     | 
[2026-02-05 00:32:37] 2026-02-04 23:25:51,444 | INFO     | architecture information:
[2026-02-05 00:32:37] 2026-02-04 23:25:51,444 | INFO     | executing command: cat /etc/os-release
[2026-02-05 00:32:37] 2026-02-04 23:25:51,459 | INFO     | cat /etc/os-release:
[2026-02-05 00:32:37] NAME="CentOS Linux"
[2026-02-05 00:32:37] VERSION="7 (Core)"
[2026-02-05 00:32:37] ID="centos"
[2026-02-05 00:32:37] ID_LIKE="rhel fedora"
[2026-02-05 00:32:37] VERSION_ID="7"
[2026-02-05 00:32:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-05 00:32:37] ANSI_COLOR="0;31"
[2026-02-05 00:32:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-05 00:32:37] HOME_URL="https://www.centos.org/"
[2026-02-05 00:32:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-05 00:32:37] 
[2026-02-05 00:32:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-05 00:32:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-05 00:32:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-05 00:32:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-05 00:32:37] 
[2026-02-05 00:32:37] 2026-02-04 23:25:51,459 | INFO     | **************************************
[2026-02-05 00:32:37] 2026-02-04 23:25:51,962 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2026-02-05 00:32:37] 2026-02-04 23:25:51,977 | INFO     | sufficient remaining disk space (1658610253824 B)
[2026-02-05 00:32:37] 2026-02-04 23:25:51,977 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-05 00:32:37] 2026-02-04 23:25:51,977 | INFO     | current server update state: UPDATING_FINAL
[2026-02-05 00:32:37] 2026-02-04 23:25:51,977 | INFO     | update_server=False
[2026-02-05 00:32:37] 2026-02-04 23:25:51,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-05 00:32:37] 2026-02-04 23:25:51,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-05 00:32:37] 2026-02-04 23:25:51,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-05 00:32:37] 2026-02-04 23:25:52,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-05 00:32:37] 2026-02-04 23:25:52,354 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-05 00:32:37] 2026-02-04 23:25:52,355 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-05 00:32:37] 2026-02-04 23:25:52,355 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-05 00:32:37] 2026-02-04 23:25:52,355 | INFO     | will abort loop
[2026-02-05 00:32:37] 2026-02-04 23:25:52,699 | INFO     | all payload control threads have been joined
[2026-02-05 00:32:37] 2026-02-04 23:25:52,983 | INFO     | [job] retrieve thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:52,984 | INFO     | [job] queue monitor thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:53,057 | INFO     | all data control threads have been joined
[2026-02-05 00:32:37] 2026-02-04 23:25:53,057 | INFO     | all job control threads have been joined
[2026-02-05 00:32:37] 2026-02-04 23:25:53,185 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:53,360 | INFO     | [job] job monitor thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:53,424 | INFO     | [data] copytool_in thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:53,594 | INFO     | [payload] validate_post thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:53,705 | INFO     | [payload] control thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:53,940 | INFO     | [job] validate thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:54,063 | INFO     | [data] control thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:54,063 | INFO     | [job] control thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:54,068 | INFO     | [payload] validate_pre thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:54,183 | INFO     | [job] create_data_payload thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:54,273 | INFO     | [payload] failed_post thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:54,289 | INFO     | [data] copytool_out thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:54,474 | INFO     | [payload] execute_payloads thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:25:55,984 | INFO     | [data] queue_monitor thread has finished
[2026-02-05 00:32:37] 2026-02-04 23:26:21,745 | INFO     | 13133s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-05 00:32:37] 2026-02-04 23:26:23,163 | INFO     | PID=1493435 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-05 00:32:37] 2026-02-04 23:26:23,163 | INFO     | .. there are 3 such processes running
[2026-02-05 00:32:37] 2026-02-04 23:26:23,163 | INFO     | found 0 job(s) in 20 queues
[2026-02-05 00:32:37] 2026-02-04 23:26:23,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-05 00:32:37] 2026-02-04 23:26:23,164 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-05 00:32:37] 2026-02-04 23:26:24,022 | INFO     | [monitor] cgroup control has ended
[2026-02-05 00:32:37] 2026-02-04 23:26:24,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22371506460480)>', '<ExcThread(monitor, started 22371066951424)>']
[2026-02-05 00:32:37] 2026-02-04 23:26:25,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-05 00:32:37] 2026-02-04 23:26:25,174 | INFO     | [monitor] control thread has ended
[2026-02-05 00:32:37] 2026-02-04 23:26:29,424 | INFO     | all workflow threads have been joined
[2026-02-05 00:32:37] 2026-02-04 23:26:29,424 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-05 00:32:37] 2026-02-04 23:26:29,424 | INFO     | traces error code: 0
[2026-02-05 00:32:37] 2026-02-04 23:26:29,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-05 00:32:37] 2026-02-04 23:26:29,536 [wrapper] ==== pilot stdout END ====
[2026-02-05 00:32:37] 2026-02-04 23:26:29,539 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-05 00:32:37] 2026-02-04 23:26:29,541 [wrapper] pilotpid: 1493435
[2026-02-05 00:32:37] 2026-02-04 23:26:29,544 [wrapper] Pilot exit status: 0
[2026-02-05 00:32:37] 2026-02-04 23:26:29,553 [wrapper] pandaids: 6999842496
[2026-02-05 00:32:37] 2026-02-04 23:26:29,601 [wrapper] cleanup supervisor_pilot 1594041 1493436
[2026-02-05 00:32:37] 2026-02-04 23:26:29,604 [wrapper] Test setup, not cleaning
[2026-02-05 00:32:37] 2026-02-04 23:26:29,607 [wrapper] apfmon messages muted
[2026-02-05 00:32:37] 2026-02-04 23:26:29,609 [wrapper] ==== wrapper stdout END ====
[2026-02-05 00:32:37] 2026-02-04 23:26:29,611 [wrapper] ==== wrapper stderr END ====
[2026-02-05 00:32:37]  *** Error codes and diagnostics ***
[2026-02-05 00:32:37]     "exeErrorCode": 0,
[2026-02-05 00:32:37]     "exeErrorDiag": "",
[2026-02-05 00:32:37]     "pilotErrorCode": 0,
[2026-02-05 00:32:37]     "pilotErrorDiag": "",
[2026-02-05 00:32:37]  *** Listing of results directory ***
[2026-02-05 00:32:37] total 673056
[2026-02-05 00:32:37] -rwx------ 1 boinc boinc     36322 Feb  3 18:15 runpilot2-wrapper.sh
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc      5111 Feb  3 18:15 queuedata.json
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc    584422 Feb  3 18:15 pilot3.tar.gz
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc       100 Feb  4 20:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-05 00:32:37] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 20:46 run_atlas
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc       105 Feb  4 20:46 job.xml
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc      6424 Feb  4 20:46 init_data.xml
[2026-02-05 00:32:37] -rw-r--r-- 2 boinc boinc 499990799 Feb  4 20:46 EVNT.48317889._000203.pool.root.1
[2026-02-05 00:32:37] drwxrwx--x 2 boinc boinc      4096 Feb  4 20:46 shared
[2026-02-05 00:32:37] -rw-r--r-- 2 boinc boinc    597755 Feb  4 20:46 input.tar.gz
[2026-02-05 00:32:37] -rw-r--r-- 2 boinc boinc     15845 Feb  4 20:46 start_atlas.sh
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc         0 Feb  4 20:46 boinc_lockfile
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc      2522 Feb  4 20:46 pandaJob.out
[2026-02-05 00:32:37] -rw------- 1 boinc boinc   1009544 Feb  4 20:46 agis_schedconf.cvmfs.json
[2026-02-05 00:32:37] -rw------- 1 boinc boinc       445 Feb  4 20:47 workernode_map.json
[2026-02-05 00:32:37] drwx------ 5 boinc boinc      4096 Feb  4 20:47 pilot3
[2026-02-05 00:32:37] -rw------- 1 boinc boinc 180777443 Feb  5 00:25 HITS.48317892._011110.pool.root.1
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc       529 Feb  5 00:25 boinc_task_state.xml
[2026-02-05 00:32:37] -rw------- 1 boinc boinc      1037 Feb  5 00:25 memory_monitor_summary.json
[2026-02-05 00:32:37] -rw------- 1 boinc boinc        95 Feb  5 00:25 pilot_heartbeat.json
[2026-02-05 00:32:37] -rw------- 1 boinc boinc   1511668 Feb  5 00:25 agis_ddmendpoints.agis.ALL.json
[2026-02-05 00:32:37] -rw------- 1 boinc boinc    382673 Feb  5 00:25 log.48317892._011110.job.log.tgz.1
[2026-02-05 00:32:37] -rw------- 1 boinc boinc      6404 Feb  5 00:25 heartbeat.json
[2026-02-05 00:32:37] -rw------- 1 boinc boinc      5132 Feb  5 00:26 pilotlog.txt
[2026-02-05 00:32:37] -rw------- 1 boinc boinc   1865828 Feb  5 00:26 log.48317892._011110.job.log.1
[2026-02-05 00:32:37] -rw------- 1 boinc boinc       357 Feb  5 00:26 output.list
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc       620 Feb  5 00:26 runtime_log
[2026-02-05 00:32:37] -rw------- 1 boinc boinc   2263040 Feb  5 00:26 result.tar.gz
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc      9205 Feb  5 00:26 runtime_log.err
[2026-02-05 00:32:37] -rw------- 1 boinc boinc       665 Feb  5 00:26 4n5NDmgAZ78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmaRVKDmRjkWIo.diag
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc        26 Feb  5 00:32 wrapper_checkpoint.txt
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc      8192 Feb  5 00:32 boinc_mmap_file
[2026-02-05 00:32:37] -rw-r--r-- 1 boinc boinc     21122 Feb  5 00:32 stderr.txt
[2026-02-05 00:32:37] HITS file was successfully produced:
[2026-02-05 00:32:37] -rw------- 1 boinc boinc 180777443 Feb  5 00:25 shared/HITS.pool.root.1
[2026-02-05 00:32:37]  *** Contents of shared directory: ***
[2026-02-05 00:32:37] total 667640
[2026-02-05 00:32:37] -rw-r--r-- 2 boinc boinc 499990799 Feb  4 20:46 ATLAS.root_0
[2026-02-05 00:32:37] -rw-r--r-- 2 boinc boinc    597755 Feb  4 20:46 input.tar.gz
[2026-02-05 00:32:37] -rw-r--r-- 2 boinc boinc     15845 Feb  4 20:46 start_atlas.sh
[2026-02-05 00:32:37] -rw------- 1 boinc boinc 180777443 Feb  5 00:25 HITS.pool.root.1
[2026-02-05 00:32:37] -rw------- 1 boinc boinc   2263040 Feb  5 00:26 result.tar.gz
00:32:39 (1489442): run_atlas exited; CPU time 50777.126328
00:32:39 (1489442): called boinc_finish(0)

</stderr_txt>
]]>

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