Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:47:39 (3584214): wrapper (7.7.26015): starting
08:47:39 (3584214): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 08:47:39] Arguments: --nthreads 4
[2026-02-04 08:47:39] Threads: 4
[2026-02-04 08:47:39] Checking for CVMFS
[2026-02-04 08:47:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 08:47:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 08:47:39] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 08:47:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 08:47:40] 2.9.2.0 1839157 9787 99040 155860 1 50 24160584 36864000 0 130560 0 4866097 99.987 331432 6942 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-04 08:47:40] CVMFS is ok
[2026-02-04 08:47:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 08:47:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 08:47:40] Further information can be found at the LHC@home message board.
[2026-02-04 08:47:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 08:47:40] Checking for apptainer binary...
[2026-02-04 08:47:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 08:47:40] Running /usr/bin/apptainer --version
[2026-02-04 08:47:40] apptainer version 1.4.1-1.1
[2026-02-04 08:47:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 08:47:40] thA332a
[2026-02-04 08:47:40] apptainer works
[2026-02-04 08:47:40] Set ATHENA_PROC_NUMBER=4
[2026-02-04 08:47:40] Set ATHENA_CORE_NUMBER=4
[2026-02-04 08:47:40] Starting ATLAS job with PandaID=6994197587
[2026-02-04 08:47:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 10:06:13]  *** The last 200 lines of the pilot log: ***
[2026-02-04 10:06:13] 2026-02-04 09:05:42,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 10:06:13] 2026-02-04 09:05:42,752 | INFO     | collected zombie processes
[2026-02-04 10:06:13] 2026-02-04 09:05:42,752 | INFO     | will attempt to kill all subprocesses of pid=3592846
[2026-02-04 10:06:13] 2026-02-04 09:05:42,796 | INFO     | process IDs to be killed: [3592846] (in reverse order)
[2026-02-04 10:06:13] 2026-02-04 09:05:42,830 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 10:06:13] 2026-02-04 09:05:42,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 10:06:13] 2026-02-04 09:05:42,832 | INFO     | did not find any defunct processes belonging to 3592846
[2026-02-04 10:06:13] 2026-02-04 09:05:42,833 | INFO     | did not find any defunct processes belonging to 3592846
[2026-02-04 10:06:13] 2026-02-04 09:05:42,833 | INFO     | ready for new job
[2026-02-04 10:06:13] 2026-02-04 09:05:42,833 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 10:06:13] 2026-02-04 09:05:42,834 | INFO     | **************************************
[2026-02-04 10:06:13] 2026-02-04 09:05:42,834 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 10:06:13] 2026-02-04 09:05:42,834 | INFO     | **************************************
[2026-02-04 10:06:13] 2026-02-04 09:05:42,834 | INFO     | 
[2026-02-04 10:06:13] 2026-02-04 09:05:42,835 | INFO     | architecture information:
[2026-02-04 10:06:13] 2026-02-04 09:05:42,835 | INFO     | executing command: cat /etc/os-release
[2026-02-04 10:06:13] 2026-02-04 09:05:42,849 | INFO     | cat /etc/os-release:
[2026-02-04 10:06:13] NAME="CentOS Linux"
[2026-02-04 10:06:13] VERSION="7 (Core)"
[2026-02-04 10:06:13] ID="centos"
[2026-02-04 10:06:13] ID_LIKE="rhel fedora"
[2026-02-04 10:06:13] VERSION_ID="7"
[2026-02-04 10:06:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 10:06:13] ANSI_COLOR="0;31"
[2026-02-04 10:06:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 10:06:13] HOME_URL="https://www.centos.org/"
[2026-02-04 10:06:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 10:06:13] 
[2026-02-04 10:06:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 10:06:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 10:06:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 10:06:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 10:06:13] 
[2026-02-04 10:06:13] 2026-02-04 09:05:42,850 | INFO     | **************************************
[2026-02-04 10:06:13] 2026-02-04 09:05:43,353 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-04 10:06:13] 2026-02-04 09:05:43,370 | INFO     | sufficient remaining disk space (332315754496 B)
[2026-02-04 10:06:13] 2026-02-04 09:05:43,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 10:06:13] 2026-02-04 09:05:43,371 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 10:06:13] 2026-02-04 09:05:43,371 | INFO     | update_server=False
[2026-02-04 10:06:13] 2026-02-04 09:05:43,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 10:06:13] 2026-02-04 09:05:43,371 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 10:06:13] 2026-02-04 09:05:43,382 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-04 10:06:13] 2026-02-04 09:05:43,382 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-04 10:06:13] 2026-02-04 09:05:43,382 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 10:06:13] 2026-02-04 09:05:43,382 | INFO     | will abort loop
[2026-02-04 10:06:13] 2026-02-04 09:05:43,632 | INFO     | all job control threads have been joined
[2026-02-04 10:06:13] 2026-02-04 09:05:43,906 | INFO     | all data control threads have been joined
[2026-02-04 10:06:13] 2026-02-04 09:05:44,376 | INFO     | [job] retrieve thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:44,388 | INFO     | [job] job monitor thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:44,390 | INFO     | all payload control threads have been joined
[2026-02-04 10:06:13] 2026-02-04 09:05:44,445 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:44,570 | INFO     | [data] copytool_in thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:44,638 | INFO     | [job] control thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:44,912 | INFO     | [data] control thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:45,085 | INFO     | [payload] failed_post thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:45,377 | INFO     | [data] copytool_out thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:45,395 | INFO     | [payload] control thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:45,419 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:45,679 | INFO     | [job] validate thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:45,791 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:45,956 | INFO     | [payload] validate_post thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:45,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 10:06:13] 2026-02-04 09:05:46,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 10:06:13] 2026-02-04 09:05:47,323 | INFO     | [job] queue monitor thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:49,982 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:54,114 | INFO     | job.realtimelogging is not enabled
[2026-02-04 10:06:13] 2026-02-04 09:05:55,120 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 10:06:13] 2026-02-04 09:05:57,727 | INFO     | [monitor] cgroup control has ended
[2026-02-04 10:06:13] 2026-02-04 09:05:59,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140442700392256)>', '<ExcThread(monitor, started 140441529870080)>']
[2026-02-04 10:06:13] 2026-02-04 09:06:04,605 | INFO     | all workflow threads have been joined
[2026-02-04 10:06:13] 2026-02-04 09:06:04,606 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 10:06:13] 2026-02-04 09:06:04,607 | INFO     | traces error code: 0
[2026-02-04 10:06:13] 2026-02-04 09:06:04,607 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 10:06:13] 2026-02-04 09:06:13,293 | INFO     | PID=3588328 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 10:06:13] 2026-02-04 09:06:13,293 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 10:06:13] 2026-02-04 09:06:13,293 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 10:06:13] 2026-02-04 09:06:13,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 10:06:13] 2026-02-04 09:06:13,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 10:06:13] 2026-02-04 09:06:13,294 | INFO     | [monitor] control thread has ended
[2026-02-04 10:06:13] 2026-02-04 09:06:13,369 [wrapper] ==== pilot stdout END ====
[2026-02-04 10:06:13] 2026-02-04 09:06:13,373 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 10:06:13] 2026-02-04 09:06:13,377 [wrapper] pilotpid: 3588328
[2026-02-04 10:06:13] 2026-02-04 09:06:13,381 [wrapper] Pilot exit status: 0
[2026-02-04 10:06:13] 2026-02-04 09:06:13,393 [wrapper] pandaids: 6994197587
[2026-02-04 10:06:13] 2026-02-04 09:06:13,414 [wrapper] cleanup supervisor_pilot 3598187 3588329
[2026-02-04 10:06:13] 2026-02-04 09:06:13,418 [wrapper] Test setup, not cleaning
[2026-02-04 10:06:13] 2026-02-04 09:06:13,422 [wrapper] apfmon messages muted
[2026-02-04 10:06:13] 2026-02-04 09:06:13,426 [wrapper] ==== wrapper stdout END ====
[2026-02-04 10:06:13] 2026-02-04 09:06:13,430 [wrapper] ==== wrapper stderr END ====
[2026-02-04 10:06:13]  *** Error codes and diagnostics ***
[2026-02-04 10:06:13]     "exeErrorCode": 0,
[2026-02-04 10:06:13]     "exeErrorDiag": "",
[2026-02-04 10:06:13]     "pilotErrorCode": 0,
[2026-02-04 10:06:13]     "pilotErrorDiag": "",
[2026-02-04 10:06:13]  *** Listing of results directory ***
[2026-02-04 10:06:13] total 666564
[2026-02-04 10:06:13] -rwx------ 1 boinc boinc     36322 Feb  3 16:14 runpilot2-wrapper.sh
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc      5111 Feb  3 16:16 queuedata.json
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc    584422 Feb  3 16:16 pilot3.tar.gz
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc       100 Feb  4 08:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 10:06:13] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 08:47 run_atlas
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc       105 Feb  4 08:47 job.xml
[2026-02-04 10:06:13] -rw-r--r-- 2 boinc boinc 492907464 Feb  4 08:47 EVNT.48318040._000156.pool.root.1
[2026-02-04 10:06:13] -rw-r--r-- 2 boinc boinc    597764 Feb  4 08:47 input.tar.gz
[2026-02-04 10:06:13] -rw-r--r-- 2 boinc boinc     15845 Feb  4 08:47 start_atlas.sh
[2026-02-04 10:06:13] drwxrwx--x 2 boinc boinc      4096 Feb  4 08:47 shared
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc         0 Feb  4 08:47 boinc_setup_complete
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc      6370 Feb  4 08:47 init_data.xml
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc         0 Feb  4 08:47 boinc_lockfile
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc      2536 Feb  4 08:47 pandaJob.out
[2026-02-04 10:06:13] -rw------- 1 boinc boinc   1009236 Feb  4 08:47 agis_schedconf.cvmfs.json
[2026-02-04 10:06:13] -rw------- 1 boinc boinc   1511668 Feb  4 08:47 agis_ddmendpoints.agis.ALL.json
[2026-02-04 10:06:13] -rw------- 1 boinc boinc       428 Feb  4 08:47 workernode_map.json
[2026-02-04 10:06:13] drwx------ 5 boinc boinc      4096 Feb  4 08:47 pilot3
[2026-02-04 10:06:13] -rw------- 1 boinc boinc 183780292 Feb  4 10:05 HITS.48318042._008040.pool.root.1
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc       530 Feb  4 10:05 boinc_task_state.xml
[2026-02-04 10:06:13] -rw------- 1 boinc boinc      1020 Feb  4 10:05 memory_monitor_summary.json
[2026-02-04 10:06:13] -rw------- 1 boinc boinc    284566 Feb  4 10:05 log.48318042._008040.job.log.tgz.1
[2026-02-04 10:06:13] -rw------- 1 boinc boinc      6318 Feb  4 10:05 heartbeat.json
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc      8192 Feb  4 10:06 boinc_mmap_file
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc        27 Feb  4 10:06 wrapper_checkpoint.txt
[2026-02-04 10:06:13] -rw------- 1 boinc boinc       747 Feb  4 10:06 pilotlog.txt
[2026-02-04 10:06:13] -rw------- 1 boinc boinc        95 Feb  4 10:06 pilot_heartbeat.json
[2026-02-04 10:06:13] -rw------- 1 boinc boinc    688124 Feb  4 10:06 log.48318042._008040.job.log.1
[2026-02-04 10:06:13] -rw------- 1 boinc boinc       357 Feb  4 10:06 output.list
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc       620 Feb  4 10:06 runtime_log
[2026-02-04 10:06:13] -rw------- 1 boinc boinc    993280 Feb  4 10:06 result.tar.gz
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc      8901 Feb  4 10:06 runtime_log.err
[2026-02-04 10:06:13] -rw------- 1 boinc boinc       658 Feb  4 10:06 1FfMDmkHX78n9Rq4apOajLDm4fhM0noT9bVooX4SDmvxUKDm9gBGzm.diag
[2026-02-04 10:06:13] -rw-r--r-- 1 boinc boinc     10736 Feb  4 10:06 stderr.txt
[2026-02-04 10:06:13] HITS file was successfully produced:
[2026-02-04 10:06:13] -rw------- 1 boinc boinc 183780292 Feb  4 10:05 shared/HITS.pool.root.1
[2026-02-04 10:06:13]  *** Contents of shared directory: ***
[2026-02-04 10:06:13] total 662412
[2026-02-04 10:06:13] -rw-r--r-- 2 boinc boinc 492907464 Feb  4 08:47 ATLAS.root_0
[2026-02-04 10:06:13] -rw-r--r-- 2 boinc boinc    597764 Feb  4 08:47 input.tar.gz
[2026-02-04 10:06:13] -rw-r--r-- 2 boinc boinc     15845 Feb  4 08:47 start_atlas.sh
[2026-02-04 10:06:13] -rw------- 1 boinc boinc 183780292 Feb  4 10:05 HITS.pool.root.1
[2026-02-04 10:06:13] -rw------- 1 boinc boinc    993280 Feb  4 10:06 result.tar.gz
10:06:14 (3584214): run_atlas exited; CPU time 17631.432083
10:06:14 (3584214): called boinc_finish(0)

</stderr_txt>
]]>

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