Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:55:02 (2516955): wrapper (7.7.26015): starting
03:55:02 (2516955): wrapper: running run_atlas (--nthreads 2)
[2026-02-04 03:55:02] Arguments: --nthreads 2
[2026-02-04 03:55:02] Threads: 2
[2026-02-04 03:55:02] Checking for CVMFS
[2026-02-04 03:55:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 03:55:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 03:55:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 03:55:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 03:55:02] 2.9.2.0 1581152 9313 63580 155851 2 49 22403852 36864001 0 130560 0 2773805 99.979 315901 16557 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-04 03:55:02] CVMFS is ok
[2026-02-04 03:55:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 03:55:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 03:55:02] Further information can be found at the LHC@home message board.
[2026-02-04 03:55:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 03:55:02] Checking for apptainer binary...
[2026-02-04 03:55:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 03:55:02] Running /usr/bin/apptainer --version
[2026-02-04 03:55:02] apptainer version 1.4.1-1.1
[2026-02-04 03:55:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 03:55:02] thA314b
[2026-02-04 03:55:02] apptainer works
[2026-02-04 03:55:02] Set ATHENA_PROC_NUMBER=2
[2026-02-04 03:55:02] Set ATHENA_CORE_NUMBER=2
[2026-02-04 03:55:02] Starting ATLAS job with PandaID=6993749425
[2026-02-04 03:55:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 06:05:42]  *** The last 200 lines of the pilot log: ***
[2026-02-04 06:05:42] 2026-02-04 05:04:38,380 | INFO     | process IDs to be killed: [2525389] (in reverse order)
[2026-02-04 06:05:42] 2026-02-04 05:04:38,401 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 06:05:42] 2026-02-04 05:04:38,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 06:05:42] 2026-02-04 05:04:38,402 | INFO     | did not find any defunct processes belonging to 2525389
[2026-02-04 06:05:42] 2026-02-04 05:04:38,403 | INFO     | did not find any defunct processes belonging to 2525389
[2026-02-04 06:05:42] 2026-02-04 05:04:38,403 | INFO     | ready for new job
[2026-02-04 06:05:42] 2026-02-04 05:04:38,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 06:05:42] 2026-02-04 05:04:38,403 | INFO     | **************************************
[2026-02-04 06:05:42] 2026-02-04 05:04:38,403 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 06:05:42] 2026-02-04 05:04:38,403 | INFO     | **************************************
[2026-02-04 06:05:42] 2026-02-04 05:04:38,403 | INFO     | 
[2026-02-04 06:05:42] 2026-02-04 05:04:38,404 | INFO     | architecture information:
[2026-02-04 06:05:42] 2026-02-04 05:04:38,404 | INFO     | executing command: cat /etc/os-release
[2026-02-04 06:05:42] 2026-02-04 05:04:38,412 | INFO     | cat /etc/os-release:
[2026-02-04 06:05:42] NAME="CentOS Linux"
[2026-02-04 06:05:42] VERSION="7 (Core)"
[2026-02-04 06:05:42] ID="centos"
[2026-02-04 06:05:42] ID_LIKE="rhel fedora"
[2026-02-04 06:05:42] VERSION_ID="7"
[2026-02-04 06:05:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 06:05:42] ANSI_COLOR="0;31"
[2026-02-04 06:05:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 06:05:42] HOME_URL="https://www.centos.org/"
[2026-02-04 06:05:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 06:05:42] 
[2026-02-04 06:05:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 06:05:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 06:05:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 06:05:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 06:05:42] 
[2026-02-04 06:05:42] 2026-02-04 05:04:38,412 | INFO     | **************************************
[2026-02-04 06:05:42] 2026-02-04 05:04:38,916 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-04 06:05:42] 2026-02-04 05:04:38,927 | INFO     | sufficient remaining disk space (499481837568 B)
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | INFO     | update_server=False
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 06:05:42] 2026-02-04 05:04:38,928 | INFO     | aborting loop
[2026-02-04 06:05:42] 2026-02-04 05:04:39,429 | INFO     | all job control threads have been joined
[2026-02-04 06:05:42] 2026-02-04 05:04:39,625 | INFO     | all payload control threads have been joined
[2026-02-04 06:05:42] 2026-02-04 05:04:39,757 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 06:05:42] 2026-02-04 05:04:39,906 | INFO     | all data control threads have been joined
[2026-02-04 06:05:42] 2026-02-04 05:04:39,934 | INFO     | [job] retrieve thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:39,934 | INFO     | [job] queue monitor thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:39,935 | INFO     | [job] job monitor thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:40,087 | INFO     | [payload] validate_post thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:40,400 | INFO     | [job] validate thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:40,435 | INFO     | [job] control thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:40,505 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:40,570 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:40,631 | INFO     | [payload] control thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:40,632 | INFO     | [data] copytool_in thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:40,912 | INFO     | [data] control thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:41,100 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:41,128 | INFO     | [payload] failed_post thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:41,764 | INFO     | [data] copytool_out thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:42,264 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 06:05:42] 2026-02-04 05:04:46,271 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:04:49,392 | INFO     | job.realtimelogging is not enabled
[2026-02-04 06:05:42] 2026-02-04 05:04:50,398 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 06:05:42] 2026-02-04 05:05:35,914 | INFO     | [monitor] cgroup control has ended
[2026-02-04 06:05:42] 2026-02-04 05:05:37,312 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139644186388288)>', '<ExcThread(monitor, started 139643462866688)>']
[2026-02-04 06:05:42] 2026-02-04 05:05:38,221 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 06:05:42] 2026-02-04 05:05:38,222 | INFO     | [monitor] control thread has ended
[2026-02-04 06:05:42] 2026-02-04 05:05:42,338 | INFO     | all workflow threads have been joined
[2026-02-04 06:05:42] 2026-02-04 05:05:42,338 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 06:05:42] 2026-02-04 05:05:42,339 | INFO     | traces error code: 0
[2026-02-04 06:05:42] 2026-02-04 05:05:42,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 06:05:42] 2026-02-04 05:05:42,381 [wrapper] ==== pilot stdout END ====
[2026-02-04 06:05:42] 2026-02-04 05:05:42,383 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 06:05:42] 2026-02-04 05:05:42,386 [wrapper] pilotpid: 2520981
[2026-02-04 06:05:42] 2026-02-04 05:05:42,388 [wrapper] Pilot exit status: 0
[2026-02-04 06:05:42] 2026-02-04 05:05:42,394 [wrapper] pandaids: 6993749425
[2026-02-04 06:05:42] 2026-02-04 05:05:42,409 [wrapper] cleanup supervisor_pilot 2530274 2520982
[2026-02-04 06:05:42] 2026-02-04 05:05:42,411 [wrapper] Test setup, not cleaning
[2026-02-04 06:05:42] 2026-02-04 05:05:42,413 [wrapper] apfmon messages muted
[2026-02-04 06:05:42] 2026-02-04 05:05:42,414 [wrapper] ==== wrapper stdout END ====
[2026-02-04 06:05:42] 2026-02-04 05:05:42,416 [wrapper] ==== wrapper stderr END ====
[2026-02-04 06:05:42]  *** Error codes and diagnostics ***
[2026-02-04 06:05:42]     "exeErrorCode": 0,
[2026-02-04 06:05:42]     "exeErrorDiag": "",
[2026-02-04 06:05:42]     "pilotErrorCode": 0,
[2026-02-04 06:05:42]     "pilotErrorDiag": "",
[2026-02-04 06:05:42]  *** Listing of results directory ***
[2026-02-04 06:05:42] total 672280
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc    584422 Feb  3 10:31 pilot3.tar.gz
[2026-02-04 06:05:42] -rwx------ 1 boinc boinc     36322 Feb  3 10:32 runpilot2-wrapper.sh
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc      5111 Feb  3 10:33 queuedata.json
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc       100 Feb  4 03:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 06:05:42] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 03:55 run_atlas
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc       105 Feb  4 03:55 job.xml
[2026-02-04 06:05:42] -rw-r--r-- 2 boinc boinc 497760006 Feb  4 03:55 EVNT.48318032._000163.pool.root.1
[2026-02-04 06:05:42] -rw-r--r-- 2 boinc boinc    597766 Feb  4 03:55 input.tar.gz
[2026-02-04 06:05:42] -rw-r--r-- 2 boinc boinc     15845 Feb  4 03:55 start_atlas.sh
[2026-02-04 06:05:42] drwxrwx--x 2 boinc boinc      4096 Feb  4 03:55 shared
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc         0 Feb  4 03:55 boinc_setup_complete
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc      6207 Feb  4 03:55 init_data.xml
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc         0 Feb  4 03:55 boinc_lockfile
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc      2535 Feb  4 03:55 pandaJob.out
[2026-02-04 06:05:42] -rw------- 1 boinc boinc   1009244 Feb  4 03:55 agis_schedconf.cvmfs.json
[2026-02-04 06:05:42] -rw------- 1 boinc boinc   1511668 Feb  4 03:55 agis_ddmendpoints.agis.ALL.json
[2026-02-04 06:05:42] -rw------- 1 boinc boinc       420 Feb  4 03:55 workernode_map.json
[2026-02-04 06:05:42] drwx------ 5 boinc boinc      4096 Feb  4 03:55 pilot3
[2026-02-04 06:05:42] -rw------- 1 boinc boinc        95 Feb  4 06:03 pilot_heartbeat.json
[2026-02-04 06:05:42] -rw------- 1 boinc boinc 183955038 Feb  4 06:04 HITS.48318034._007686.pool.root.1
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc       530 Feb  4 06:04 boinc_task_state.xml
[2026-02-04 06:05:42] -rw------- 1 boinc boinc      1016 Feb  4 06:04 memory_monitor_summary.json
[2026-02-04 06:05:42] -rw------- 1 boinc boinc    268003 Feb  4 06:04 log.48318034._007686.job.log.tgz.1
[2026-02-04 06:05:42] -rw------- 1 boinc boinc      6293 Feb  4 06:04 heartbeat.json
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc        27 Feb  4 06:05 wrapper_checkpoint.txt
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc      8192 Feb  4 06:05 boinc_mmap_file
[2026-02-04 06:05:42] -rw------- 1 boinc boinc      4624 Feb  4 06:05 pilotlog.txt
[2026-02-04 06:05:42] -rw------- 1 boinc boinc   1114178 Feb  4 06:05 log.48318034._007686.job.log.1
[2026-02-04 06:05:42] -rw------- 1 boinc boinc       357 Feb  4 06:05 output.list
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc       620 Feb  4 06:05 runtime_log
[2026-02-04 06:05:42] -rw------- 1 boinc boinc   1402880 Feb  4 06:05 result.tar.gz
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc      8901 Feb  4 06:05 runtime_log.err
[2026-02-04 06:05:42] -rw------- 1 boinc boinc       658 Feb  4 06:05 Cc1MDmswR78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm9jUKDmkYj92n.diag
[2026-02-04 06:05:42] -rw-r--r-- 1 boinc boinc     10098 Feb  4 06:05 stderr.txt
[2026-02-04 06:05:42] HITS file was successfully produced:
[2026-02-04 06:05:42] -rw------- 1 boinc boinc 183955038 Feb  4 06:04 shared/HITS.pool.root.1
[2026-02-04 06:05:42]  *** Contents of shared directory: ***
[2026-02-04 06:05:42] total 667720
[2026-02-04 06:05:42] -rw-r--r-- 2 boinc boinc 497760006 Feb  4 03:55 ATLAS.root_0
[2026-02-04 06:05:42] -rw-r--r-- 2 boinc boinc    597766 Feb  4 03:55 input.tar.gz
[2026-02-04 06:05:42] -rw-r--r-- 2 boinc boinc     15845 Feb  4 03:55 start_atlas.sh
[2026-02-04 06:05:42] -rw------- 1 boinc boinc 183955038 Feb  4 06:04 HITS.pool.root.1
[2026-02-04 06:05:42] -rw------- 1 boinc boinc   1402880 Feb  4 06:05 result.tar.gz
06:05:43 (2516955): run_atlas exited; CPU time 15086.727767
06:05:43 (2516955): called boinc_finish(0)

</stderr_txt>
]]>

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