Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:50:45 (2062): wrapper (7.7.26015): starting
23:50:45 (2062): wrapper: running run_atlas (--nthreads 8)
[2026-02-03 23:50:45] Arguments: --nthreads 8
[2026-02-03 23:50:45] Threads: 8
[2026-02-03 23:50:45] Checking for CVMFS
[2026-02-03 23:50:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 23:50:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 23:50:46] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 23:50:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 23:50:46] 2.11.2.0 5643 72020 107868 155846 0 89 24386825 25165825 4912 130560 0 18275846 99.811 16253250 3032 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-03 23:50:46] CVMFS is ok
[2026-02-03 23:50:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 23:50:46] Checking for apptainer binary...
[2026-02-03 23:50:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 23:50:46] Running /usr/bin/apptainer --version
[2026-02-03 23:50:46] apptainer version 1.3.2-1.el7
[2026-02-03 23:50:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 23:50:48] cg-vwn380.simple-grid.lan
[2026-02-03 23:50:48] apptainer works
[2026-02-03 23:50:48] Set ATHENA_PROC_NUMBER=8
[2026-02-03 23:50:48] Set ATHENA_CORE_NUMBER=8
[2026-02-03 23:50:48] Starting ATLAS job with PandaID=6983772762
[2026-02-03 23:50:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 02:52:46]  *** The last 200 lines of the pilot log: ***
[2026-02-04 02:52:47] 2026-02-04 01:51:58,867 | INFO     | log transfer has been attempted: DONE
[2026-02-04 02:52:47] 2026-02-04 01:51:58,867 | INFO     | job 6983772762 has finished - writing final server update
[2026-02-04 02:52:47] 2026-02-04 01:51:58,868 | INFO     | total number of processed events: 400 (read)
[2026-02-04 02:52:47] 2026-02-04 01:51:58,870 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6983772762/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 02:52:47] 2026-02-04 01:51:58,870 | INFO     | extracted standard info from prmon json
[2026-02-04 02:52:47] 2026-02-04 01:51:58,871 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 02:52:47] 2026-02-04 01:51:58,871 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 02:52:47] 2026-02-04 01:51:58,871 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 02:52:47] 2026-02-04 01:51:58,871 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 02:52:47] 2026-02-04 01:51:58,875 | INFO     | fitting pss+swap vs Time
[2026-02-04 02:52:47] 2026-02-04 01:51:58,876 | INFO     | sum of square deviations: 1719429448.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,877 | INFO     | sum of deviations: 3659283616.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,877 | INFO     | mean x: 1770164494.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,877 | INFO     | mean y: 2475867.8757062145
[2026-02-04 02:52:47] 2026-02-04 01:51:58,878 | INFO     | intersect: -3764781891.9897223
[2026-02-04 02:52:47] 2026-02-04 01:51:58,878 | INFO     | chi2: 2.3828660096735867
[2026-02-04 02:52:47] 2026-02-04 01:51:58,878 | INFO     | sum of square deviations: 1577789583.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,880 | INFO     | sum of deviations: 15260713948.5
[2026-02-04 02:52:47] 2026-02-04 01:51:58,880 | INFO     | mean x: 1770164341.5
[2026-02-04 02:52:47] 2026-02-04 01:51:58,880 | INFO     | mean y: 2488063.3779069767
[2026-02-04 02:52:47] 2026-02-04 01:51:58,880 | INFO     | intersect: -17118915163.345238
[2026-02-04 02:52:47] 2026-02-04 01:51:58,881 | INFO     | chi2: 1.5779473730860691
[2026-02-04 02:52:47] 2026-02-04 01:51:58,881 | INFO     | current chi2=1.5779473730860691 (change=33.77943339322626 %)
[2026-02-04 02:52:47] 2026-02-04 01:51:58,881 | INFO     | sum of square deviations: 1444149868.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,882 | INFO     | sum of deviations: 14656314023.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,882 | INFO     | mean x: 1770164189.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,883 | INFO     | mean y: 2487373.491017964
[2026-02-04 02:52:47] 2026-02-04 01:51:58,883 | INFO     | intersect: -17962464049.5791
[2026-02-04 02:52:47] 2026-02-04 01:51:58,883 | INFO     | chi2: 1.5793045666395213
[2026-02-04 02:52:47] 2026-02-04 01:51:58,883 | INFO     | current chi2=1.5793045666395213 (change=-0.08601006450537557 %)
[2026-02-04 02:52:47] 2026-02-04 01:51:58,883 | INFO     | right removable region: 166
[2026-02-04 02:52:47] 2026-02-04 01:51:58,884 | INFO     | sum of square deviations: 1577789583.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,885 | INFO     | sum of deviations: -23012634422.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,885 | INFO     | mean x: 1770164646.5
[2026-02-04 02:52:47] 2026-02-04 01:51:58,885 | INFO     | mean y: 2504214.7325581396
[2026-02-04 02:52:47] 2026-02-04 01:51:58,885 | INFO     | intersect: 25820998845.1749
[2026-02-04 02:52:47] 2026-02-04 01:51:58,885 | INFO     | chi2: 0.9341614397258695
[2026-02-04 02:52:47] 2026-02-04 01:51:58,886 | INFO     | current chi2=0.9341614397258695 (change=60.79672814444845 %)
[2026-02-04 02:52:47] 2026-02-04 01:51:58,889 | INFO     | sum of square deviations: 1444149868.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,890 | INFO     | sum of deviations: -19285569863.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,890 | INFO     | mean x: 1770164799.0
[2026-02-04 02:52:47] 2026-02-04 01:51:58,891 | INFO     | mean y: 2499916.2814371255
[2026-02-04 02:52:47] 2026-02-04 01:51:58,891 | INFO     | intersect: 23641761780.02164
[2026-02-04 02:52:47] 2026-02-04 01:51:58,891 | INFO     | chi2: 0.9175917454384254
[2026-02-04 02:52:47] 2026-02-04 01:51:58,891 | INFO     | current chi2=0.9175917454384254 (change=1.7737506155581138 %)
[2026-02-04 02:52:47] 2026-02-04 01:51:58,891 | INFO     | left removable region: 20
[2026-02-04 02:52:47] 2026-02-04 01:51:58,892 | INFO     | sum of square deviations: 964976232.5
[2026-02-04 02:52:47] 2026-02-04 01:51:58,893 | INFO     | sum of deviations: 3344615177.0000005
[2026-02-04 02:52:47] 2026-02-04 01:51:58,893 | INFO     | mean x: 1770164768.5
[2026-02-04 02:52:47] 2026-02-04 01:51:58,893 | INFO     | mean y: 2497873.0821917807
[2026-02-04 02:52:47] 2026-02-04 01:51:58,893 | INFO     | intersect: -6132907073.811972
[2026-02-04 02:52:47] 2026-02-04 01:51:58,893 | INFO     | chi2: 0.0004343003837247724
[2026-02-04 02:52:47] 2026-02-04 01:51:58,894 | INFO     | current memory leak: 3.47 B/s (using 146 data points, chi2=0.00)
[2026-02-04 02:52:47] 2026-02-04 01:51:58,894 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-02-04 02:52:47] 2026-02-04 01:51:58,894 | INFO     | ..............................
[2026-02-04 02:52:47] 2026-02-04 01:51:58,895 | INFO     | . Timing measurements:
[2026-02-04 02:52:47] 2026-02-04 01:51:58,895 | INFO     | . get job = 0 s
[2026-02-04 02:52:47] 2026-02-04 01:51:58,895 | INFO     | . initial setup = 8 s
[2026-02-04 02:52:47] 2026-02-04 01:51:58,895 | INFO     | . payload setup = 15 s
[2026-02-04 02:52:47] 2026-02-04 01:51:58,895 | INFO     | . stage-in = 0 s
[2026-02-04 02:52:47] 2026-02-04 01:51:58,895 | INFO     | . payload execution = 10800 s
[2026-02-04 02:52:47] 2026-02-04 01:51:58,895 | INFO     | . stage-out = 3 s
[2026-02-04 02:52:47] 2026-02-04 01:51:58,895 | INFO     | . log creation = 1 s
[2026-02-04 02:52:47] 2026-02-04 01:51:58,895 | INFO     | ..............................
[2026-02-04 02:52:47] 2026-02-04 01:51:59,035 | INFO     | 
[2026-02-04 02:52:47] 2026-02-04 01:51:59,035 | INFO     | job summary report
[2026-02-04 02:52:47] 2026-02-04 01:51:59,035 | INFO     | --------------------------------------------------
[2026-02-04 02:52:47] 2026-02-04 01:51:59,035 | INFO     | PanDA job id: 6983772762
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | task id: 48318042
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | errors: (none)
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | pilot state: finished 
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | transexitcode: 0
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | exeerrorcode: 0
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | exeerrordiag: 
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | exitcode: 0
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | exitmsg: OK
[2026-02-04 02:52:47] 2026-02-04 01:51:59,036 | INFO     | cpuconsumptiontime: 60755 s
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | nevents: 400
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | neventsw: 0
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | pid: 10529
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | pgrp: 10529
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | corecount: 8
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | event service: False
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | sizes: {0: 2277190, 1: 2277875, 2: 2278336, 13: 2278336, 10820: 2307386, 10821: 2307385, 10826: 2316623, 10827: 2316761}
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | --------------------------------------------------
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | 
[2026-02-04 02:52:47] 2026-02-04 01:51:59,037 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-02-04 02:52:47] 2026-02-04 01:51:59,601 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,602 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,602 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,602 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,602 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,602 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,602 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,602 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,604 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 02:52:47] 2026-02-04 01:51:59,604 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,604 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 02:52:47] 2026-02-04 01:51:59,604 | INFO     | job 6983772762 has completed (purged errors)
[2026-02-04 02:52:47] 2026-02-04 01:51:59,604 | INFO     | overall cleanup function is called
[2026-02-04 02:52:47] 2026-02-04 01:52:00,613 | INFO     | --- collectZombieJob: --- 10, [10529]
[2026-02-04 02:52:47] 2026-02-04 01:52:00,613 | INFO     | zombie collector waiting for pid 10529
[2026-02-04 02:52:47] 2026-02-04 01:52:00,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 02:52:47] 2026-02-04 01:52:00,613 | INFO     | collected zombie processes
[2026-02-04 02:52:47] 2026-02-04 01:52:00,614 | INFO     | will attempt to kill all subprocesses of pid=10529
[2026-02-04 02:52:47] 2026-02-04 01:52:00,736 | INFO     | process IDs to be killed: [10529] (in reverse order)
[2026-02-04 02:52:47] 2026-02-04 01:52:01,449 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 02:52:47] 2026-02-04 01:52:01,449 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 02:52:47] 2026-02-04 01:52:01,452 | INFO     | did not find any defunct processes belonging to 10529
[2026-02-04 02:52:47] 2026-02-04 01:52:01,455 | INFO     | did not find any defunct processes belonging to 10529
[2026-02-04 02:52:47] 2026-02-04 01:52:01,455 | INFO     | ready for new job
[2026-02-04 02:52:47] 2026-02-04 01:52:01,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 02:52:47] 2026-02-04 01:52:01,457 | INFO     | **************************************
[2026-02-04 02:52:47] 2026-02-04 01:52:01,457 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 02:52:47] 2026-02-04 01:52:01,457 | INFO     | **************************************
[2026-02-04 02:52:47] 2026-02-04 01:52:01,457 | INFO     | 
[2026-02-04 02:52:47] 2026-02-04 01:52:01,458 | INFO     | pilot is running in a VM
[2026-02-04 02:52:47] 2026-02-04 01:52:01,458 | INFO     | architecture information:
[2026-02-04 02:52:47] 2026-02-04 01:52:01,459 | INFO     | executing command: cat /etc/os-release
[2026-02-04 02:52:47] 2026-02-04 01:52:01,675 | INFO     | cat /etc/os-release:
[2026-02-04 02:52:47] NAME="CentOS Linux"
[2026-02-04 02:52:47] VERSION="7 (Core)"
[2026-02-04 02:52:47] ID="centos"
[2026-02-04 02:52:47] ID_LIKE="rhel fedora"
[2026-02-04 02:52:47] VERSION_ID="7"
[2026-02-04 02:52:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 02:52:47] ANSI_COLOR="0;31"
[2026-02-04 02:52:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 02:52:47] HOME_URL="https://www.centos.org/"
[2026-02-04 02:52:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 02:52:47] 
[2026-02-04 02:52:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 02:52:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 02:52:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 02:52:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 02:52:47] 
[2026-02-04 02:52:47] 2026-02-04 01:52:01,675 | INFO     | **************************************
[2026-02-04 02:52:47] 2026-02-04 01:52:02,178 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-02-04 02:52:47] 2026-02-04 01:52:02,437 | INFO     | sufficient remaining disk space (491997102080 B)
[2026-02-04 02:52:47] 2026-02-04 01:52:02,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 02:52:47] 2026-02-04 01:52:02,437 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 02:52:47] 2026-02-04 01:52:02,437 | INFO     | update_server=False
[2026-02-04 02:52:47] 2026-02-04 01:52:02,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 02:52:47] 2026-02-04 01:52:02,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 02:52:47] 2026-02-04 01:52:02,438 | INFO     | aborting loop
[2026-02-04 02:52:47] 2026-02-04 01:52:03,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 02:52:47] 2026-02-04 01:52:03,403 | INFO     | all job control threads have been joined
[2026-02-04 02:52:47] 2026-02-04 01:52:03,443 | INFO     | [job] retrieve thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:03,444 | INFO     | [job] job monitor thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:03,474 | INFO     | all data control threads have been joined
[2026-02-04 02:52:47] 2026-02-04 01:52:03,518 | INFO     | all payload control threads have been joined
[2026-02-04 02:52:47] 2026-02-04 01:52:03,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 02:52:47] 2026-02-04 01:52:03,800 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,036 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 02:52:47] 2026-02-04 01:52:04,232 | INFO     | [job] validate thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,394 | INFO     | [payload] failed_post thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,409 | INFO     | [job] control thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,480 | INFO     | [data] control thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,524 | INFO     | [payload] control thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,854 | INFO     | [payload] validate_post thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,864 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,891 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:04,949 | INFO     | [data] copytool_in thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:05,046 | INFO     | [job] queue monitor thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:05,113 | INFO     | [data] copytool_out thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:07,791 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 02:52:47] 2026-02-04 01:52:31,623 | INFO     | PID=6069 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-04 02:52:47] 2026-02-04 01:52:31,623 | INFO     | .. there are 9 such processes running
[2026-02-04 02:52:47] 2026-02-04 01:52:31,625 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 02:52:47] 2026-02-04 01:52:31,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 02:52:47] 2026-02-04 01:52:31,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 02:52:47] 2026-02-04 01:52:37,508 | INFO     | [monitor] cgroup control has ended
[2026-02-04 02:52:47] 2026-02-04 01:52:37,743 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695525914432)>', '<ExcThread(monitor, started 139694801147648)>']
[2026-02-04 02:52:47] 2026-02-04 01:52:38,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 02:52:47] 2026-02-04 01:52:38,667 | INFO     | [monitor] control thread has ended
[2026-02-04 02:52:47] 2026-02-04 01:52:42,769 | INFO     | all workflow threads have been joined
[2026-02-04 02:52:47] 2026-02-04 01:52:42,769 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 02:52:47] 2026-02-04 01:52:42,770 | INFO     | traces error code: 0
[2026-02-04 02:52:47] 2026-02-04 01:52:42,770 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 02:52:47] 2026-02-04 01:52:43,033 [wrapper] ==== pilot stdout END ====
[2026-02-04 02:52:47] 2026-02-04 01:52:43,116 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 02:52:47] 2026-02-04 01:52:43,186 [wrapper] pilotpid: 6069
[2026-02-04 02:52:47] 2026-02-04 01:52:43,265 [wrapper] Pilot exit status: 0
[2026-02-04 02:52:47] 2026-02-04 01:52:43,743 [wrapper] pandaids: 6983772762
[2026-02-04 02:52:47] 2026-02-04 01:52:44,389 [wrapper] cleanup supervisor_pilot  9257 6070
[2026-02-04 02:52:47] 2026-02-04 01:52:44,394 [wrapper] Test setup, not cleaning
[2026-02-04 02:52:47] 2026-02-04 01:52:44,449 [wrapper] apfmon messages muted
[2026-02-04 02:52:47] 2026-02-04 01:52:44,458 [wrapper] ==== wrapper stdout END ====
[2026-02-04 02:52:47] 2026-02-04 01:52:44,467 [wrapper] ==== wrapper stderr END ====
[2026-02-04 02:52:47]  *** Error codes and diagnostics ***
[2026-02-04 02:52:47]     "exeErrorCode": 0,
[2026-02-04 02:52:47]     "exeErrorDiag": "",
[2026-02-04 02:52:47]     "pilotErrorCode": 0,
[2026-02-04 02:52:47]     "pilotErrorDiag": "",
[2026-02-04 02:52:47]  *** Listing of results directory ***
[2026-02-04 02:52:47] total 680508
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-02-04 02:52:47] -rwx------. 1 boinc boinc     36322 Jan 26 04:19 runpilot2-wrapper.sh
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc      5111 Jan 26 04:21 queuedata.json
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc       100 Feb  3 23:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 02:52:47] -rwxr-xr-x. 1 boinc boinc      7986 Feb  3 23:50 run_atlas
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc       105 Feb  3 23:50 job.xml
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc      6391 Feb  3 23:50 init_data.xml
[2026-02-04 02:52:47] -rw-r--r--. 2 boinc boinc 503738329 Feb  3 23:50 EVNT.48318040._000038.pool.root.1
[2026-02-04 02:52:47] -rw-r--r--. 2 boinc boinc     15845 Feb  3 23:50 start_atlas.sh
[2026-02-04 02:52:47] drwxrwx--x. 2 boinc boinc        68 Feb  3 23:50 shared
[2026-02-04 02:52:47] -rw-r--r--. 2 boinc boinc    597768 Feb  3 23:50 input.tar.gz
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc         0 Feb  3 23:50 boinc_lockfile
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc      2532 Feb  3 23:50 pandaJob.out
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc   1009244 Feb  3 23:51 agis_schedconf.cvmfs.json
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc       415 Feb  3 23:51 workernode_map.json
[2026-02-04 02:52:47] drwx------. 5 boinc boinc      4096 Feb  3 23:51 pilot3
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc 185254550 Feb  4 02:50 HITS.48318042._001886.pool.root.1
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc       532 Feb  4 02:51 boinc_task_state.xml
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc      1022 Feb  4 02:51 memory_monitor_summary.json
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc   1511668 Feb  4 02:51 agis_ddmendpoints.agis.ALL.json
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc    424022 Feb  4 02:51 log.48318042._001886.job.log.tgz.1
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc      6319 Feb  4 02:51 heartbeat.json
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc        95 Feb  4 02:52 pilot_heartbeat.json
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc        28 Feb  4 02:52 wrapper_checkpoint.txt
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc      8192 Feb  4 02:52 boinc_mmap_file
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc      4879 Feb  4 02:52 pilotlog.txt
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc   1536700 Feb  4 02:52 log.48318042._001886.job.log.1
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc       357 Feb  4 02:52 output.list
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc       620 Feb  4 02:52 runtime_log
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc   1976320 Feb  4 02:52 result.tar.gz
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc       654 Feb  4 02:52 vT9MDm2JS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbS2KDmYINAMo.diag
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc      8816 Feb  4 02:52 runtime_log.err
[2026-02-04 02:52:47] -rw-r--r--. 1 boinc boinc     20692 Feb  4 02:52 stderr.txt
[2026-02-04 02:52:47] HITS file was successfully produced:
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc 185254550 Feb  4 02:50 shared/HITS.pool.root.1
[2026-02-04 02:52:47]  *** Contents of shared directory: ***
[2026-02-04 02:52:47] total 675380
[2026-02-04 02:52:47] -rw-r--r--. 2 boinc boinc 503738329 Feb  3 23:50 ATLAS.root_0
[2026-02-04 02:52:47] -rw-r--r--. 2 boinc boinc     15845 Feb  3 23:50 start_atlas.sh
[2026-02-04 02:52:47] -rw-r--r--. 2 boinc boinc    597768 Feb  3 23:50 input.tar.gz
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc 185254550 Feb  4 02:50 HITS.pool.root.1
[2026-02-04 02:52:47] -rw-------. 1 boinc boinc   1976320 Feb  4 02:52 result.tar.gz
02:52:48 (2062): run_atlas exited; CPU time 60870.670819
02:52:48 (2062): called boinc_finish(0)

</stderr_txt>
]]>

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