Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:06:13 (683616): wrapper (7.7.26015): starting
04:06:13 (683616): wrapper: running run_atlas (--nthreads 12)
[2026-02-04 04:06:13] Arguments: --nthreads 12
[2026-02-04 04:06:13] Threads: 12
[2026-02-04 04:06:13] Checking for CVMFS
[2026-02-04 04:06:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 04:06:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 04:06:16] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 04:06:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 04:06:16] 2.13.3.0 4294 39462 166344 155852 3 1 26596733 46080001 922 130560 0 53725939 99.995 1300869 671 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-02-04 04:06:16] CVMFS is ok
[2026-02-04 04:06:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 04:06:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 04:06:16] Further information can be found at the LHC@home message board.
[2026-02-04 04:06:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 04:06:16] Checking for apptainer binary...
[2026-02-04 04:06:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 04:06:16] Running /usr/bin/apptainer --version
[2026-02-04 04:06:16] apptainer version 1.4.5-2.el9
[2026-02-04 04:06:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 04:06:16] gpu01.farm.particle.cz
[2026-02-04 04:06:16] apptainer works
[2026-02-04 04:06:16] Set ATHENA_PROC_NUMBER=12
[2026-02-04 04:06:16] Set ATHENA_CORE_NUMBER=12
[2026-02-04 04:06:16] Starting ATLAS job with PandaID=6983602713
[2026-02-04 04:06:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 04:54:37]  *** The last 200 lines of the pilot log: ***
[2026-02-04 04:54:37]  lfn=log.48330021._000239.job.log.tgz.1
[2026-02-04 04:54:37]  mtime=0
[2026-02-04 04:54:37]  protocol_id=None
[2026-02-04 04:54:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-04 04:54:37]  replicas=None
[2026-02-04 04:54:37]  scope=mc23_13p6TeV
[2026-02-04 04:54:37]  status=None
[2026-02-04 04:54:37]  status_code=0
[2026-02-04 04:54:37]  storage_token=
[2026-02-04 04:54:37]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6983602713/log.48330021._000239.job.log.tgz.1
[2026-02-04 04:54:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7a/1d/log.48330021._000239.job.log.tgz.1
[2026-02-04 04:54:37]  workdir=None
[2026-02-04 04:54:37] ]
[2026-02-04 04:54:37] 2026-02-04 03:53:49,959 | INFO     | time since job start (2842s) is within the limit (349056.0s)
[2026-02-04 04:54:37] 2026-02-04 03:53:49,971 | INFO     | transferring file log.48330021._000239.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6983602713/log.48330021._000239.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-04 04:54:37] 2026-02-04 03:53:49,971 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6983602713/log.48330021._000239.job.log.tgz.1 /var/lib/boinc/slots/1/log.48330021._000239.job
[2026-02-04 04:54:37] 2026-02-04 03:53:49,985 | INFO     | adding to output.list: log.48330021._000239.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7a/1d/log.48330021._000239.job.log.tg
[2026-02-04 04:54:37] 2026-02-04 03:53:49,986 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-04 04:54:37] 2026-02-04 03:53:49,986 | INFO     | summary of transferred files:
[2026-02-04 04:54:37] 2026-02-04 03:53:49,986 | INFO     |  -- lfn=log.48330021._000239.job.log.tgz.1, status_code=0, status=transferred
[2026-02-04 04:54:37] 2026-02-04 03:53:49,986 | INFO     | stage-out finished correctly
[2026-02-04 04:54:37] 2026-02-04 03:53:50,692 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-04 04:54:37] 2026-02-04 03:53:51,975 | INFO     | time since job start (2844s) is within the limit (349056.0s)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,095 | INFO     | PID=687490 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-04 04:54:37] 2026-02-04 03:53:53,095 | INFO     | .. there are 2 such processes running
[2026-02-04 04:54:37] 2026-02-04 03:53:53,447 | INFO     | job 6983602713 has state=finished
[2026-02-04 04:54:37] 2026-02-04 03:53:53,447 | INFO     | preparing for final server update for job 6983602713 in state='finished'
[2026-02-04 04:54:37] 2026-02-04 03:53:53,447 | INFO     | reading metadata from: /var/lib/boinc/slots/1/PanDA_Pilot-6983602713/jobReport.json
[2026-02-04 04:54:37] 2026-02-04 03:53:53,449 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/1/workernode_map.json
[2026-02-04 04:54:37] 2026-02-04 03:53:53,449 | INFO     | this job has now completed (state=finished)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,449 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,449 | INFO     | log transfer has been attempted: DONE
[2026-02-04 04:54:37] 2026-02-04 03:53:53,449 | INFO     | job 6983602713 has finished - writing final server update
[2026-02-04 04:54:37] 2026-02-04 03:53:53,449 | INFO     | total number of processed events: 400 (read)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,453 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6983602713/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,453 | INFO     | extracted standard info from prmon json
[2026-02-04 04:54:37] 2026-02-04 03:53:53,453 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 04:54:37] 2026-02-04 03:53:53,453 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 04:54:37] 2026-02-04 03:53:53,454 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 04:54:37] 2026-02-04 03:53:53,454 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 04:54:37] 2026-02-04 03:53:53,454 | INFO     | fitting pss+swap vs Time
[2026-02-04 04:54:37] 2026-02-04 03:53:53,454 | INFO     | sum of square deviations: 19832930.0
[2026-02-04 04:54:37] 2026-02-04 03:53:53,454 | INFO     | sum of deviations: -2586515503.5
[2026-02-04 04:54:37] 2026-02-04 03:53:53,454 | INFO     | mean x: 1770175899.5
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | mean y: 2790914.075
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | intersect: 230860632290.9572
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | chi2: 0.06401089145222273
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | current memory leak: -130.42 B/s (using 40 data points, chi2=0.06)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | could have reported an average CPU frequency of 3236 MHz (5 samples)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | ..............................
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | . Timing measurements:
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | . get job = 0 s
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | . initial setup = 5 s
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | . payload setup = 3 s
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | . stage-in = 0 s
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | . payload execution = 2824 s
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | . stage-out = 0 s
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | . log creation = 0 s
[2026-02-04 04:54:37] 2026-02-04 03:53:53,455 | INFO     | ..............................
[2026-02-04 04:54:37] 2026-02-04 03:53:53,505 | INFO     | 
[2026-02-04 04:54:37] 2026-02-04 03:53:53,505 | INFO     | job summary report
[2026-02-04 04:54:37] 2026-02-04 03:53:53,505 | INFO     | --------------------------------------------------
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | PanDA job id: 6983602713
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | task id: 48330021
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | errors: (none)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | pilot state: finished 
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | transexitcode: 0
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | exeerrorcode: 0
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | exeerrordiag: 
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | exitcode: 0
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | exitmsg: OK
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | cpuconsumptiontime: 30634 s
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | nevents: 400
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | neventsw: 0
[2026-02-04 04:54:37] 2026-02-04 03:53:53,506 | INFO     | pid: 692068
[2026-02-04 04:54:37] 2026-02-04 03:53:53,507 | INFO     | pgrp: 692068
[2026-02-04 04:54:37] 2026-02-04 03:53:53,507 | INFO     | corecount: 12
[2026-02-04 04:54:37] 2026-02-04 03:53:53,507 | INFO     | event service: False
[2026-02-04 04:54:37] 2026-02-04 03:53:53,507 | INFO     | sizes: {0: 2278415, 11: 2278415, 2831: 2303832, 2832: 2312830, 2833: 2312886, 2835: 2313112}
[2026-02-04 04:54:37] 2026-02-04 03:53:53,507 | INFO     | --------------------------------------------------
[2026-02-04 04:54:37] 2026-02-04 03:53:53,507 | INFO     | 
[2026-02-04 04:54:37] 2026-02-04 03:53:53,507 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-02-04 04:54:37] 2026-02-04 03:53:53,523 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,523 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,523 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,523 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,523 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,523 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,523 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,523 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,524 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 04:54:37] 2026-02-04 03:53:53,525 | INFO     | job 6983602713 has completed (purged errors)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,525 | INFO     | overall cleanup function is called
[2026-02-04 04:54:37] 2026-02-04 03:53:53,634 | WARNING  | process 692068 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 04:54:37] 2026-02-04 03:53:53,701 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 04:54:37] 2026-02-04 03:53:53,786 | INFO     | number of running child processes to parent process 692068: 1
[2026-02-04 04:54:37] 2026-02-04 03:53:53,786 | INFO     | maximum number of monitored processes: 6
[2026-02-04 04:54:37] 2026-02-04 03:53:53,786 | INFO     | aborting job monitoring since job object (job id=6983602713) has expired
[2026-02-04 04:54:37] 2026-02-04 03:53:54,533 | INFO     | --- collectZombieJob: --- 10, [692068]
[2026-02-04 04:54:37] 2026-02-04 03:53:54,533 | INFO     | zombie collector waiting for pid 692068
[2026-02-04 04:54:37] 2026-02-04 03:53:54,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 04:54:37] 2026-02-04 03:53:54,536 | INFO     | collected zombie processes
[2026-02-04 04:54:37] 2026-02-04 03:53:54,536 | INFO     | will attempt to kill all subprocesses of pid=692068
[2026-02-04 04:54:37] 2026-02-04 03:53:54,630 | INFO     | process IDs to be killed: [692068] (in reverse order)
[2026-02-04 04:54:37] 2026-02-04 03:53:54,670 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 04:54:37] 2026-02-04 03:53:54,670 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 04:54:37] 2026-02-04 03:53:54,673 | INFO     | did not find any defunct processes belonging to 692068
[2026-02-04 04:54:37] 2026-02-04 03:53:54,676 | INFO     | did not find any defunct processes belonging to 692068
[2026-02-04 04:54:37] 2026-02-04 03:53:54,676 | INFO     | ready for new job
[2026-02-04 04:54:37] 2026-02-04 03:53:54,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 04:54:37] 2026-02-04 03:53:54,677 | INFO     | **************************************
[2026-02-04 04:54:37] 2026-02-04 03:53:54,677 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 04:54:37] 2026-02-04 03:53:54,677 | INFO     | **************************************
[2026-02-04 04:54:37] 2026-02-04 03:53:54,677 | INFO     | 
[2026-02-04 04:54:37] 2026-02-04 03:53:54,678 | INFO     | architecture information:
[2026-02-04 04:54:37] 2026-02-04 03:53:54,679 | INFO     | executing command: cat /etc/os-release
[2026-02-04 04:54:37] 2026-02-04 03:53:54,690 | INFO     | cat /etc/os-release:
[2026-02-04 04:54:37] NAME="CentOS Linux"
[2026-02-04 04:54:37] VERSION="7 (Core)"
[2026-02-04 04:54:37] ID="centos"
[2026-02-04 04:54:37] ID_LIKE="rhel fedora"
[2026-02-04 04:54:37] VERSION_ID="7"
[2026-02-04 04:54:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 04:54:37] ANSI_COLOR="0;31"
[2026-02-04 04:54:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 04:54:37] HOME_URL="https://www.centos.org/"
[2026-02-04 04:54:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 04:54:37] 
[2026-02-04 04:54:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 04:54:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 04:54:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 04:54:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 04:54:37] 
[2026-02-04 04:54:37] 2026-02-04 03:53:54,690 | INFO     | **************************************
[2026-02-04 04:54:37] 2026-02-04 03:53:55,193 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-02-04 04:54:37] 2026-02-04 03:53:55,206 | INFO     | sufficient remaining disk space (42042654720 B)
[2026-02-04 04:54:37] 2026-02-04 03:53:55,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 04:54:37] 2026-02-04 03:53:55,206 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 04:54:37] 2026-02-04 03:53:55,206 | INFO     | update_server=False
[2026-02-04 04:54:37] 2026-02-04 03:53:55,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 04:54:37] 2026-02-04 03:53:55,206 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 04:54:37] 2026-02-04 03:53:55,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 04:54:37] 2026-02-04 03:53:55,207 | INFO     | aborting loop
[2026-02-04 04:54:37] 2026-02-04 03:53:55,441 | INFO     | all job control threads have been joined
[2026-02-04 04:54:37] 2026-02-04 03:53:55,458 | INFO     | all payload control threads have been joined
[2026-02-04 04:54:37] 2026-02-04 03:53:55,545 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 04:54:37] 2026-02-04 03:53:55,722 | INFO     | job.realtimelogging is not enabled
[2026-02-04 04:54:37] 2026-02-04 03:53:55,987 | INFO     | all data control threads have been joined
[2026-02-04 04:54:37] 2026-02-04 03:53:56,212 | INFO     | [job] retrieve thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:56,212 | INFO     | [job] queue monitor thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:56,212 | INFO     | [job] job monitor thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:56,357 | INFO     | [payload] failed_post thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:56,363 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:56,446 | INFO     | [job] control thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:56,463 | INFO     | [payload] control thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:56,727 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:56,771 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 04:54:37] 2026-02-04 03:53:56,975 | INFO     | [payload] validate_post thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:56,992 | INFO     | [data] control thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:57,094 | INFO     | [job] validate thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:57,203 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:57,360 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:57,516 | INFO     | [data] copytool_in thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:53:57,550 | INFO     | [data] copytool_out thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:54:00,776 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 04:54:37] 2026-02-04 03:54:25,273 | INFO     | PID=687490 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-04 04:54:37] 2026-02-04 03:54:25,273 | INFO     | .. there are 2 such processes running
[2026-02-04 04:54:37] 2026-02-04 03:54:25,273 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 04:54:37] 2026-02-04 03:54:25,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 04:54:37] 2026-02-04 03:54:25,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 04:54:37] 2026-02-04 03:54:30,756 | INFO     | [monitor] cgroup control has ended
[2026-02-04 04:54:37] 2026-02-04 03:54:32,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591506315072)>', '<ExcThread(monitor, started 140591149065984)>']
[2026-02-04 04:54:37] 2026-02-04 03:54:33,313 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 04:54:37] 2026-02-04 03:54:33,313 | INFO     | [monitor] control thread has ended
[2026-02-04 04:54:37] 2026-02-04 03:54:37,646 | INFO     | all workflow threads have been joined
[2026-02-04 04:54:37] 2026-02-04 03:54:37,647 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 04:54:37] 2026-02-04 03:54:37,647 | INFO     | traces error code: 0
[2026-02-04 04:54:37] 2026-02-04 03:54:37,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 04:54:37] 2026-02-04 03:54:37,716 [wrapper] ==== pilot stdout END ====
[2026-02-04 04:54:37] 2026-02-04 03:54:37,718 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 04:54:37] 2026-02-04 03:54:37,720 [wrapper] pilotpid: 687490
[2026-02-04 04:54:37] 2026-02-04 03:54:37,722 [wrapper] Pilot exit status: 0
[2026-02-04 04:54:37] 2026-02-04 03:54:37,729 [wrapper] pandaids: 6983602713
[2026-02-04 04:54:37] 2026-02-04 03:54:37,755 [wrapper] cleanup supervisor_pilot  734425 687491
[2026-02-04 04:54:37] 2026-02-04 03:54:37,757 [wrapper] Test setup, not cleaning
[2026-02-04 04:54:37] 2026-02-04 03:54:37,759 [wrapper] apfmon messages muted
[2026-02-04 04:54:37] 2026-02-04 03:54:37,761 [wrapper] ==== wrapper stdout END ====
[2026-02-04 04:54:37] 2026-02-04 03:54:37,763 [wrapper] ==== wrapper stderr END ====
[2026-02-04 04:54:37]  *** Error codes and diagnostics ***
[2026-02-04 04:54:37]     "exeErrorCode": 0,
[2026-02-04 04:54:37]     "exeErrorDiag": "",
[2026-02-04 04:54:37]     "pilotErrorCode": 0,
[2026-02-04 04:54:37]     "pilotErrorDiag": "",
[2026-02-04 04:54:37]  *** Listing of results directory ***
[2026-02-04 04:54:37] total 406664
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-02-04 04:54:37] -rwx------ 1 boinc boinc     36322 Jan 26 02:12 runpilot2-wrapper.sh
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:14 queuedata.json
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc       100 Feb  4 04:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 04:54:37] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 04:06 run_atlas
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc       105 Feb  4 04:06 job.xml
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc      9457 Feb  4 04:06 init_data.xml
[2026-02-04 04:54:37] -rw-r--r-- 2 boinc boinc 247090863 Feb  4 04:06 EVNT.48330019._000010.pool.root.1
[2026-02-04 04:54:37] -rw-r--r-- 2 boinc boinc     15845 Feb  4 04:06 start_atlas.sh
[2026-02-04 04:54:37] drwxrwx--x 2 boinc boinc      4096 Feb  4 04:06 shared
[2026-02-04 04:54:37] -rw-r--r-- 2 boinc boinc    597784 Feb  4 04:06 input.tar.gz
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc         0 Feb  4 04:06 boinc_lockfile
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc      2630 Feb  4 04:06 pandaJob.out
[2026-02-04 04:54:37] -rw------- 1 boinc boinc   1009244 Feb  4 04:06 agis_schedconf.cvmfs.json
[2026-02-04 04:54:37] -rw------- 1 boinc boinc   1511668 Feb  4 04:06 agis_ddmendpoints.agis.ALL.json
[2026-02-04 04:54:37] -rw------- 1 boinc boinc       433 Feb  4 04:06 workernode_map.json
[2026-02-04 04:54:37] drwx------ 5 boinc boinc      4096 Feb  4 04:06 pilot3
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc       529 Feb  4 04:53 boinc_task_state.xml
[2026-02-04 04:54:37] -rw------- 1 boinc boinc 163784467 Feb  4 04:53 HITS.48330021._000239.pool.root.1
[2026-02-04 04:54:37] -rw------- 1 boinc boinc      1015 Feb  4 04:53 memory_monitor_summary.json
[2026-02-04 04:54:37] -rw------- 1 boinc boinc    361869 Feb  4 04:53 log.48330021._000239.job.log.tgz.1
[2026-02-04 04:54:37] -rw------- 1 boinc boinc        95 Feb  4 04:53 pilot_heartbeat.json
[2026-02-04 04:54:37] -rw------- 1 boinc boinc      6320 Feb  4 04:53 heartbeat.json
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc        27 Feb  4 04:54 wrapper_checkpoint.txt
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc      8192 Feb  4 04:54 boinc_mmap_file
[2026-02-04 04:54:37] -rw------- 1 boinc boinc      4890 Feb  4 04:54 pilotlog.txt
[2026-02-04 04:54:37] -rw------- 1 boinc boinc    444173 Feb  4 04:54 log.48330021._000239.job.log.1
[2026-02-04 04:54:37] -rw------- 1 boinc boinc       357 Feb  4 04:54 output.list
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc       620 Feb  4 04:54 runtime_log
[2026-02-04 04:54:37] -rw------- 1 boinc boinc    819200 Feb  4 04:54 result.tar.gz
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc      8853 Feb  4 04:54 runtime_log.err
[2026-02-04 04:54:37] -rw------- 1 boinc boinc       659 Feb  4 04:54 bBGLDm2KQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUm8KDm2pYFln.diag
[2026-02-04 04:54:37] -rw-r--r-- 1 boinc boinc     21690 Feb  4 04:54 stderr.txt
[2026-02-04 04:54:37] HITS file was successfully produced:
[2026-02-04 04:54:37] -rw------- 1 boinc boinc 163784467 Feb  4 04:53 shared/HITS.pool.root.1
[2026-02-04 04:54:37]  *** Contents of shared directory: ***
[2026-02-04 04:54:37] total 402652
[2026-02-04 04:54:37] -rw-r--r-- 2 boinc boinc 247090863 Feb  4 04:06 ATLAS.root_0
[2026-02-04 04:54:37] -rw-r--r-- 2 boinc boinc     15845 Feb  4 04:06 start_atlas.sh
[2026-02-04 04:54:37] -rw-r--r-- 2 boinc boinc    597784 Feb  4 04:06 input.tar.gz
[2026-02-04 04:54:37] -rw------- 1 boinc boinc 163784467 Feb  4 04:53 HITS.pool.root.1
[2026-02-04 04:54:37] -rw------- 1 boinc boinc    819200 Feb  4 04:54 result.tar.gz
04:54:39 (683616): run_atlas exited; CPU time 30658.238944
04:54:39 (683616): called boinc_finish(0)

</stderr_txt>
]]>

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