Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:30:34 (2901281): wrapper (7.7.26015): starting
02:30:34 (2901281): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 02:30:34] Arguments: --nthreads 4
[2026-02-04 02:30:34] Threads: 4
[2026-02-04 02:30:34] Checking for CVMFS
[2026-02-04 02:30:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 02:30:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 02:30:35] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 02:30:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 02:30:35] 2.9.2.0 1058158 9255 96872 155850 3 50 35792507 36864000 0 130560 0 5244564 99.988 312225 16014 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-04 02:30:35] CVMFS is ok
[2026-02-04 02:30:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 02:30:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 02:30:35] Further information can be found at the LHC@home message board.
[2026-02-04 02:30:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 02:30:35] Checking for apptainer binary...
[2026-02-04 02:30:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 02:30:35] Running /usr/bin/apptainer --version
[2026-02-04 02:30:35] apptainer version 1.4.1-1.1
[2026-02-04 02:30:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 02:30:35] thA315b
[2026-02-04 02:30:35] apptainer works
[2026-02-04 02:30:35] Set ATHENA_PROC_NUMBER=4
[2026-02-04 02:30:35] Set ATHENA_CORE_NUMBER=4
[2026-02-04 02:30:35] Starting ATLAS job with PandaID=6994085729
[2026-02-04 02:30:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 03:31:04]  *** The last 200 lines of the pilot log: ***
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | job 6994085729 has completed (purged errors)
[2026-02-04 03:31:04] 2026-02-04 02:30:32,742 | INFO     | overall cleanup function is called
[2026-02-04 03:31:04] 2026-02-04 02:30:33,749 | INFO     | --- collectZombieJob: --- 10, [2909900]
[2026-02-04 03:31:04] 2026-02-04 02:30:33,749 | INFO     | zombie collector waiting for pid 2909900
[2026-02-04 03:31:04] 2026-02-04 02:30:33,749 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 03:31:04] 2026-02-04 02:30:33,749 | INFO     | collected zombie processes
[2026-02-04 03:31:04] 2026-02-04 02:30:33,749 | INFO     | will attempt to kill all subprocesses of pid=2909900
[2026-02-04 03:31:04] 2026-02-04 02:30:33,794 | INFO     | process IDs to be killed: [2909900] (in reverse order)
[2026-02-04 03:31:04] 2026-02-04 02:30:33,822 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 03:31:04] 2026-02-04 02:30:33,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 03:31:04] 2026-02-04 02:30:33,823 | INFO     | did not find any defunct processes belonging to 2909900
[2026-02-04 03:31:04] 2026-02-04 02:30:33,824 | INFO     | did not find any defunct processes belonging to 2909900
[2026-02-04 03:31:04] 2026-02-04 02:30:33,824 | INFO     | ready for new job
[2026-02-04 03:31:04] 2026-02-04 02:30:33,824 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 03:31:04] 2026-02-04 02:30:33,825 | INFO     | **************************************
[2026-02-04 03:31:04] 2026-02-04 02:30:33,825 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 03:31:04] 2026-02-04 02:30:33,825 | INFO     | **************************************
[2026-02-04 03:31:04] 2026-02-04 02:30:33,825 | INFO     | 
[2026-02-04 03:31:04] 2026-02-04 02:30:33,826 | INFO     | architecture information:
[2026-02-04 03:31:04] 2026-02-04 02:30:33,826 | INFO     | executing command: cat /etc/os-release
[2026-02-04 03:31:04] 2026-02-04 02:30:33,835 | INFO     | cat /etc/os-release:
[2026-02-04 03:31:04] NAME="CentOS Linux"
[2026-02-04 03:31:04] VERSION="7 (Core)"
[2026-02-04 03:31:04] ID="centos"
[2026-02-04 03:31:04] ID_LIKE="rhel fedora"
[2026-02-04 03:31:04] VERSION_ID="7"
[2026-02-04 03:31:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 03:31:04] ANSI_COLOR="0;31"
[2026-02-04 03:31:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 03:31:04] HOME_URL="https://www.centos.org/"
[2026-02-04 03:31:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 03:31:04] 
[2026-02-04 03:31:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 03:31:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 03:31:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 03:31:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 03:31:04] 
[2026-02-04 03:31:04] 2026-02-04 02:30:33,836 | INFO     | **************************************
[2026-02-04 03:31:04] 2026-02-04 02:30:34,339 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-04 03:31:04] 2026-02-04 02:30:34,353 | INFO     | sufficient remaining disk space (319115231232 B)
[2026-02-04 03:31:04] 2026-02-04 02:30:34,353 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 03:31:04] 2026-02-04 02:30:34,353 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 03:31:04] 2026-02-04 02:30:34,353 | INFO     | update_server=False
[2026-02-04 03:31:04] 2026-02-04 02:30:34,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 03:31:04] 2026-02-04 02:30:34,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 03:31:04] 2026-02-04 02:30:34,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 03:31:04] 2026-02-04 02:30:34,354 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 03:31:04] 2026-02-04 02:30:34,655 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-04 03:31:04] 2026-02-04 02:30:34,655 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-04 03:31:04] 2026-02-04 02:30:34,655 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 03:31:04] 2026-02-04 02:30:34,655 | INFO     | will abort loop
[2026-02-04 03:31:04] 2026-02-04 02:30:35,029 | INFO     | all data control threads have been joined
[2026-02-04 03:31:04] 2026-02-04 02:30:35,244 | INFO     | all job control threads have been joined
[2026-02-04 03:31:04] 2026-02-04 02:30:35,359 | INFO     | [job] retrieve thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:35,360 | INFO     | [job] queue monitor thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:35,479 | INFO     | all payload control threads have been joined
[2026-02-04 03:31:04] 2026-02-04 02:30:35,661 | INFO     | [job] job monitor thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:35,749 | INFO     | [payload] failed_post thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,035 | INFO     | [data] control thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,250 | INFO     | [job] control thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,272 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,360 | INFO     | [data] copytool_out thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,485 | INFO     | [payload] control thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,647 | INFO     | [job] validate thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,711 | INFO     | [payload] validate_post thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,726 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,734 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:36,862 | INFO     | [data] copytool_in thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:38,361 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:41,647 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-02-04 03:31:04] 2026-02-04 02:30:44,752 | INFO     | job.realtimelogging is not enabled
[2026-02-04 03:31:04] 2026-02-04 02:30:45,757 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 03:31:04] 2026-02-04 02:30:50,587 | INFO     | [monitor] cgroup control has ended
[2026-02-04 03:31:04] 2026-02-04 02:30:52,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140005094696768)>', '<ExcThread(monitor, started 140004391122688)>']
[2026-02-04 03:31:04] 2026-02-04 02:30:57,213 | INFO     | all workflow threads have been joined
[2026-02-04 03:31:04] 2026-02-04 02:30:57,214 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 03:31:04] 2026-02-04 02:30:57,214 | INFO     | traces error code: 0
[2026-02-04 03:31:04] 2026-02-04 02:30:57,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 03:31:04] 2026-02-04 02:31:04,426 | INFO     | PID=2905388 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 03:31:04] 2026-02-04 02:31:04,426 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 03:31:04] 2026-02-04 02:31:04,426 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 03:31:04] 2026-02-04 02:31:04,426 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 03:31:04] 2026-02-04 02:31:04,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 03:31:04] 2026-02-04 02:31:04,427 | INFO     | [monitor] control thread has ended
[2026-02-04 03:31:04] 2026-02-04 02:31:04,478 [wrapper] ==== pilot stdout END ====
[2026-02-04 03:31:04] 2026-02-04 02:31:04,481 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 03:31:04] 2026-02-04 02:31:04,484 [wrapper] pilotpid: 2905388
[2026-02-04 03:31:04] 2026-02-04 02:31:04,486 [wrapper] Pilot exit status: 0
[2026-02-04 03:31:04] 2026-02-04 02:31:04,494 [wrapper] pandaids: 6994085729
[2026-02-04 03:31:04] 2026-02-04 02:31:04,513 [wrapper] cleanup supervisor_pilot 2915116 2905389
[2026-02-04 03:31:04] 2026-02-04 02:31:04,515 [wrapper] Test setup, not cleaning
[2026-02-04 03:31:04] 2026-02-04 02:31:04,518 [wrapper] apfmon messages muted
[2026-02-04 03:31:04] 2026-02-04 02:31:04,520 [wrapper] ==== wrapper stdout END ====
[2026-02-04 03:31:04] 2026-02-04 02:31:04,523 [wrapper] ==== wrapper stderr END ====
[2026-02-04 03:31:04]  *** Error codes and diagnostics ***
[2026-02-04 03:31:04]     "exeErrorCode": 0,
[2026-02-04 03:31:04]     "exeErrorDiag": "",
[2026-02-04 03:31:04]     "pilotErrorCode": 0,
[2026-02-04 03:31:04]     "pilotErrorDiag": "",
[2026-02-04 03:31:04]  *** Listing of results directory ***
[2026-02-04 03:31:04] total 671096
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc    584422 Feb  3 10:31 pilot3.tar.gz
[2026-02-04 03:31:04] -rwx------ 1 boinc boinc     36322 Feb  3 10:35 runpilot2-wrapper.sh
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc      5111 Feb  3 10:37 queuedata.json
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc       100 Feb  4 02:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 03:31:04] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 02:30 run_atlas
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc       105 Feb  4 02:30 job.xml
[2026-02-04 03:31:04] -rw-r--r-- 2 boinc boinc 494578406 Feb  4 02:30 EVNT.48442096._000007.pool.root.1
[2026-02-04 03:31:04] -rw-r--r-- 2 boinc boinc    597746 Feb  4 02:30 input.tar.gz
[2026-02-04 03:31:04] -rw-r--r-- 2 boinc boinc     15845 Feb  4 02:30 start_atlas.sh
[2026-02-04 03:31:04] drwxrwx--x 2 boinc boinc      4096 Feb  4 02:30 shared
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc         0 Feb  4 02:30 boinc_setup_complete
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc      6443 Feb  4 02:30 init_data.xml
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc         0 Feb  4 02:30 boinc_lockfile
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc      2526 Feb  4 02:30 pandaJob.out
[2026-02-04 03:31:04] -rw------- 1 boinc boinc   1009228 Feb  4 02:30 agis_schedconf.cvmfs.json
[2026-02-04 03:31:04] -rw------- 1 boinc boinc   1511668 Feb  4 02:30 agis_ddmendpoints.agis.ALL.json
[2026-02-04 03:31:04] -rw------- 1 boinc boinc       424 Feb  4 02:30 workernode_map.json
[2026-02-04 03:31:04] drwx------ 5 boinc boinc      4096 Feb  4 02:30 pilot3
[2026-02-04 03:31:04] -rw------- 1 boinc boinc 187111727 Feb  4 03:30 HITS.48442098._000316.pool.root.1
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc       530 Feb  4 03:30 boinc_task_state.xml
[2026-02-04 03:31:04] -rw------- 1 boinc boinc      1015 Feb  4 03:30 memory_monitor_summary.json
[2026-02-04 03:31:04] -rw------- 1 boinc boinc    250821 Feb  4 03:30 log.48442098._000316.job.log.tgz.1
[2026-02-04 03:31:04] -rw------- 1 boinc boinc      6292 Feb  4 03:30 heartbeat.json
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc      8192 Feb  4 03:30 boinc_mmap_file
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc        27 Feb  4 03:30 wrapper_checkpoint.txt
[2026-02-04 03:31:04] -rw------- 1 boinc boinc       747 Feb  4 03:31 pilotlog.txt
[2026-02-04 03:31:04] -rw------- 1 boinc boinc        95 Feb  4 03:31 pilot_heartbeat.json
[2026-02-04 03:31:04] -rw------- 1 boinc boinc    539075 Feb  4 03:31 log.48442098._000316.job.log.1
[2026-02-04 03:31:04] -rw------- 1 boinc boinc       357 Feb  4 03:31 output.list
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc       620 Feb  4 03:31 runtime_log
[2026-02-04 03:31:04] -rw------- 1 boinc boinc    808960 Feb  4 03:31 result.tar.gz
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc      8901 Feb  4 03:31 runtime_log.err
[2026-02-04 03:31:04] -rw------- 1 boinc boinc       658 Feb  4 03:31 1PNLDm0zR78n9Rq4apOajLDm4fhM0noT9bVooX4SDm4OUKDmoFbGem.diag
[2026-02-04 03:31:04] -rw-r--r-- 1 boinc boinc     12771 Feb  4 03:31 stderr.txt
[2026-02-04 03:31:04] HITS file was successfully produced:
[2026-02-04 03:31:04] -rw------- 1 boinc boinc 187111727 Feb  4 03:30 shared/HITS.pool.root.1
[2026-02-04 03:31:04]  *** Contents of shared directory: ***
[2026-02-04 03:31:04] total 667116
[2026-02-04 03:31:04] -rw-r--r-- 2 boinc boinc 494578406 Feb  4 02:30 ATLAS.root_0
[2026-02-04 03:31:04] -rw-r--r-- 2 boinc boinc    597746 Feb  4 02:30 input.tar.gz
[2026-02-04 03:31:04] -rw-r--r-- 2 boinc boinc     15845 Feb  4 02:30 start_atlas.sh
[2026-02-04 03:31:04] -rw------- 1 boinc boinc 187111727 Feb  4 03:30 HITS.pool.root.1
[2026-02-04 03:31:04] -rw------- 1 boinc boinc    808960 Feb  4 03:31 result.tar.gz
03:31:05 (2901281): run_atlas exited; CPU time 13477.130242
03:31:05 (2901281): called boinc_finish(0)

</stderr_txt>
]]>

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