Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:34:41 (1276744): wrapper (7.7.26015): starting
14:34:41 (1276744): wrapper: running run_atlas (--nthreads 6)
[2026-02-04 14:34:41] Arguments: --nthreads 6
[2026-02-04 14:34:41] Threads: 6
[2026-02-04 14:34:41] Checking for CVMFS
[2026-02-04 14:34:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 14:35:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 14:35:00] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 14:35:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 14:35:00] 2.13.3.0 1181973 263 54580 155857 0 188 49903131 52428800 929 130560 0 314032 99.987 15191 21 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-02-04 14:35:00] CVMFS is ok
[2026-02-04 14:35:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 14:35:00] Checking for apptainer binary...
[2026-02-04 14:35:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 14:35:00] Running /usr/bin/apptainer --version
[2026-02-04 14:35:00] apptainer version 1.4.5-2.el9
[2026-02-04 14:35:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 14:35:00] testio008
[2026-02-04 14:35:00] apptainer works
[2026-02-04 14:35:00] Set ATHENA_PROC_NUMBER=6
[2026-02-04 14:35:00] Set ATHENA_CORE_NUMBER=6
[2026-02-04 14:35:00] Starting ATLAS job with PandaID=6993749536
[2026-02-04 14:35:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 15:57:20]  *** The last 200 lines of the pilot log: ***
[2026-02-04 15:57:20]  protocol_id=None
[2026-02-04 15:57:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-04 15:57:20]  replicas=None
[2026-02-04 15:57:20]  scope=mc23_13p6TeV
[2026-02-04 15:57:20]  status=None
[2026-02-04 15:57:20]  status_code=0
[2026-02-04 15:57:20]  storage_token=
[2026-02-04 15:57:20]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6993749536/log.48318042._006678.job.log.tgz.1
[2026-02-04 15:57:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/d1/log.48318042._006678.job.log.tgz.1
[2026-02-04 15:57:20]  workdir=None
[2026-02-04 15:57:20] ]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,800 | INFO     | transferring file log.48318042._006678.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6993749536/log.48318042._006678.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-04 15:57:20] 2026-02-04 06:56:27,801 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6993749536/log.48318042._006678.job.log.tgz.1 /var/lib/boinc/slots/1/log.48318042._006678.job
[2026-02-04 15:57:20] 2026-02-04 06:56:27,808 | INFO     | adding to output.list: log.48318042._006678.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/d1/log.48318042._006678.job.log.tg
[2026-02-04 15:57:20] 2026-02-04 06:56:27,808 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-04 15:57:20] 2026-02-04 06:56:27,808 | INFO     | summary of transferred files:
[2026-02-04 15:57:20] 2026-02-04 06:56:27,808 | INFO     |  -- lfn=log.48318042._006678.job.log.tgz.1, status_code=0, status=transferred
[2026-02-04 15:57:20] 2026-02-04 06:56:27,808 | INFO     | stage-out finished correctly
[2026-02-04 15:57:20] 2026-02-04 06:56:27,847 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-04 15:57:20] 2026-02-04 06:56:27,884 | INFO     | job 6993749536 has state=finished
[2026-02-04 15:57:20] 2026-02-04 06:56:27,884 | INFO     | preparing for final server update for job 6993749536 in state='finished'
[2026-02-04 15:57:20] 2026-02-04 06:56:27,884 | INFO     | reading metadata from: /var/lib/boinc/slots/1/PanDA_Pilot-6993749536/jobReport.json
[2026-02-04 15:57:20] 2026-02-04 06:56:27,885 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/1/workernode_map.json
[2026-02-04 15:57:20] 2026-02-04 06:56:27,885 | INFO     | this job has now completed (state=finished)
[2026-02-04 15:57:20] 2026-02-04 06:56:27,885 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 15:57:20] 2026-02-04 06:56:27,885 | INFO     | log transfer has been attempted: DONE
[2026-02-04 15:57:20] 2026-02-04 06:56:27,885 | INFO     | job 6993749536 has finished - writing final server update
[2026-02-04 15:57:20] 2026-02-04 06:56:27,885 | INFO     | total number of processed events: 400 (read)
[2026-02-04 15:57:20] 2026-02-04 06:56:27,887 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6993749536/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 15:57:20] 2026-02-04 06:56:27,887 | INFO     | extracted standard info from prmon json
[2026-02-04 15:57:20] 2026-02-04 06:56:27,887 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 15:57:20] 2026-02-04 06:56:27,887 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 15:57:20] 2026-02-04 06:56:27,887 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 15:57:20] 2026-02-04 06:56:27,887 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 15:57:20] 2026-02-04 06:56:27,888 | INFO     | fitting pss+swap vs Time
[2026-02-04 15:57:20] 2026-02-04 06:56:27,888 | INFO     | sum of square deviations: 115715658.0
[2026-02-04 15:57:20] 2026-02-04 06:56:27,888 | INFO     | sum of deviations: -6597079270.5
[2026-02-04 15:57:20] 2026-02-04 06:56:27,888 | INFO     | mean x: 1770185855.5
[2026-02-04 15:57:20] 2026-02-04 06:56:27,888 | INFO     | mean y: 2546490.013888889
[2026-02-04 15:57:20] 2026-02-04 06:56:27,888 | INFO     | intersect: 100922824817.87302
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | chi2: 0.03535867189791378
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | current memory leak: -57.01 B/s (using 72 data points, chi2=0.04)
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | could have reported an average CPU frequency of 4275 MHz (6 samples)
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | ..............................
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | . Timing measurements:
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | . get job = 0 s
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | . initial setup = 8 s
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | . payload setup = 4 s
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | . stage-in = 0 s
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | . payload execution = 4801 s
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | . stage-out = 0 s
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | . log creation = 0 s
[2026-02-04 15:57:20] 2026-02-04 06:56:27,889 | INFO     | ..............................
[2026-02-04 15:57:20] 2026-02-04 06:56:27,926 | INFO     | 
[2026-02-04 15:57:20] 2026-02-04 06:56:27,926 | INFO     | job summary report
[2026-02-04 15:57:20] 2026-02-04 06:56:27,926 | INFO     | --------------------------------------------------
[2026-02-04 15:57:20] 2026-02-04 06:56:27,926 | INFO     | PanDA job id: 6993749536
[2026-02-04 15:57:20] 2026-02-04 06:56:27,926 | INFO     | task id: 48318042
[2026-02-04 15:57:20] 2026-02-04 06:56:27,926 | INFO     | errors: (none)
[2026-02-04 15:57:20] 2026-02-04 06:56:27,926 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 15:57:20] 2026-02-04 06:56:27,926 | INFO     | pilot state: finished 
[2026-02-04 15:57:20] 2026-02-04 06:56:27,926 | INFO     | transexitcode: 0
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | exeerrorcode: 0
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | exeerrordiag: 
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | exitcode: 0
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | exitmsg: OK
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | cpuconsumptiontime: 26916 s
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | nevents: 400
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | neventsw: 0
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | pid: 1285516
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | pgrp: 1285516
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | corecount: 6
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | event service: False
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | sizes: {0: 2277851, 1: 2278312, 11: 2278312, 4809: 2304558, 4811: 2313750}
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | --------------------------------------------------
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | 
[2026-02-04 15:57:20] 2026-02-04 06:56:27,927 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-02-04 15:57:20] 2026-02-04 06:56:27,934 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | job 6993749536 has completed (purged errors)
[2026-02-04 15:57:20] 2026-02-04 06:56:27,935 | INFO     | overall cleanup function is called
[2026-02-04 15:57:20] 2026-02-04 06:56:28,941 | INFO     | --- collectZombieJob: --- 10, [1285516]
[2026-02-04 15:57:20] 2026-02-04 06:56:28,941 | INFO     | zombie collector waiting for pid 1285516
[2026-02-04 15:57:20] 2026-02-04 06:56:28,941 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 15:57:20] 2026-02-04 06:56:28,941 | INFO     | collected zombie processes
[2026-02-04 15:57:20] 2026-02-04 06:56:28,941 | INFO     | will attempt to kill all subprocesses of pid=1285516
[2026-02-04 15:57:20] 2026-02-04 06:56:28,967 | INFO     | process IDs to be killed: [1285516] (in reverse order)
[2026-02-04 15:57:20] 2026-02-04 06:56:28,983 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 15:57:20] 2026-02-04 06:56:28,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 15:57:20] 2026-02-04 06:56:28,985 | INFO     | did not find any defunct processes belonging to 1285516
[2026-02-04 15:57:20] 2026-02-04 06:56:28,986 | INFO     | did not find any defunct processes belonging to 1285516
[2026-02-04 15:57:20] 2026-02-04 06:56:28,986 | INFO     | ready for new job
[2026-02-04 15:57:20] 2026-02-04 06:56:28,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 15:57:20] 2026-02-04 06:56:28,987 | INFO     | **************************************
[2026-02-04 15:57:20] 2026-02-04 06:56:28,987 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 15:57:20] 2026-02-04 06:56:28,987 | INFO     | **************************************
[2026-02-04 15:57:20] 2026-02-04 06:56:28,987 | INFO     | 
[2026-02-04 15:57:20] 2026-02-04 06:56:28,987 | INFO     | architecture information:
[2026-02-04 15:57:20] 2026-02-04 06:56:28,988 | INFO     | executing command: cat /etc/os-release
[2026-02-04 15:57:20] 2026-02-04 06:56:28,993 | INFO     | cat /etc/os-release:
[2026-02-04 15:57:20] NAME="CentOS Linux"
[2026-02-04 15:57:20] VERSION="7 (Core)"
[2026-02-04 15:57:20] ID="centos"
[2026-02-04 15:57:20] ID_LIKE="rhel fedora"
[2026-02-04 15:57:20] VERSION_ID="7"
[2026-02-04 15:57:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 15:57:20] ANSI_COLOR="0;31"
[2026-02-04 15:57:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 15:57:20] HOME_URL="https://www.centos.org/"
[2026-02-04 15:57:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 15:57:20] 
[2026-02-04 15:57:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 15:57:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 15:57:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 15:57:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 15:57:20] 
[2026-02-04 15:57:20] 2026-02-04 06:56:28,994 | INFO     | **************************************
[2026-02-04 15:57:20] 2026-02-04 06:56:29,496 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-02-04 15:57:20] 2026-02-04 06:56:29,502 | INFO     | sufficient remaining disk space (281461915648 B)
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | INFO     | update_server=False
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 15:57:20] 2026-02-04 06:56:29,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 15:57:20] 2026-02-04 06:56:29,597 | INFO     | all payload control threads have been joined
[2026-02-04 15:57:20] 2026-02-04 06:56:29,853 | INFO     | all data control threads have been joined
[2026-02-04 15:57:20] 2026-02-04 06:56:30,508 | INFO     | [job] retrieve thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:30,508 | INFO     | [job] queue monitor thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:30,602 | INFO     | [payload] control thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:30,670 | INFO     | all job control threads have been joined
[2026-02-04 15:57:20] 2026-02-04 06:56:30,693 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:30,852 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 15:57:20] 2026-02-04 06:56:30,858 | INFO     | [data] control thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:31,371 | INFO     | [payload] failed_post thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:31,559 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:31,560 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:31,614 | INFO     | [data] copytool_in thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:31,675 | INFO     | [job] control thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:31,700 | INFO     | [job] validate thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:31,853 | WARNING  | process 1285516 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 15:57:20] 2026-02-04 06:56:31,897 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 15:57:20] 2026-02-04 06:56:31,898 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 15:57:20] 2026-02-04 06:56:31,898 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-04 15:57:20] 2026-02-04 06:56:31,898 | WARNING  | maxPSS not found in memory monitor output
[2026-02-04 15:57:20] 2026-02-04 06:56:31,899 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/1/PanDA_Pilot-6993749536/payload.stdout) since it has not been created yet
[2026-02-04 15:57:20] 2026-02-04 06:56:31,899 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-02-04 15:57:20] 2026-02-04 06:56:31,909 | INFO     | sufficient remaining disk space (281461915648 B)
[2026-02-04 15:57:20] 2026-02-04 06:56:31,909 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-04 15:57:20] 2026-02-04 06:56:31,909 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6993749536/HITS.48318042._006678.pool.root.1 since it does not exist
[2026-02-04 15:57:20] 2026-02-04 06:56:31,916 | INFO     | [payload] validate_post thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:31,963 | INFO     | number of running child processes to parent process 1285516: 1
[2026-02-04 15:57:20] 2026-02-04 06:56:31,963 | INFO     | maximum number of monitored processes: 6
[2026-02-04 15:57:20] 2026-02-04 06:56:31,963 | INFO     | aborting job monitoring since job object (job id=6993749536) has expired
[2026-02-04 15:57:20] 2026-02-04 06:56:31,963 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 15:57:20] 2026-02-04 06:56:31,964 | INFO     | will abort loop
[2026-02-04 15:57:20] 2026-02-04 06:56:31,975 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:32,857 | INFO     | [data] copytool_out thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:32,968 | INFO     | [job] job monitor thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:56:33,509 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 15:57:20] 2026-02-04 06:57:14,035 | INFO     | [monitor] cgroup control has ended
[2026-02-04 15:57:20] 2026-02-04 06:57:15,035 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520818874176)>', '<ExcThread(monitor, started 140520458286848)>']
[2026-02-04 15:57:20] 2026-02-04 06:57:15,725 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 15:57:20] 2026-02-04 06:57:15,725 | INFO     | [monitor] control thread has ended
[2026-02-04 15:57:20] 2026-02-04 06:57:20,060 | INFO     | all workflow threads have been joined
[2026-02-04 15:57:20] 2026-02-04 06:57:20,060 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 15:57:20] 2026-02-04 06:57:20,060 | INFO     | traces error code: 0
[2026-02-04 15:57:20] 2026-02-04 06:57:20,060 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 15:57:20] 2026-02-04 06:57:20,130 [wrapper] ==== pilot stdout END ====
[2026-02-04 15:57:20] 2026-02-04 06:57:20,132 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 15:57:20] 2026-02-04 06:57:20,133 [wrapper] pilotpid: 1280887
[2026-02-04 15:57:20] 2026-02-04 06:57:20,134 [wrapper] Pilot exit status: 0
[2026-02-04 15:57:20] 2026-02-04 06:57:20,143 [wrapper] pandaids: 6993749536
[2026-02-04 15:57:20] 2026-02-04 06:57:20,175 [wrapper] cleanup supervisor_pilot 1290645 1280888
[2026-02-04 15:57:20] 2026-02-04 06:57:20,177 [wrapper] Test setup, not cleaning
[2026-02-04 15:57:20] 2026-02-04 06:57:20,178 [wrapper] apfmon messages muted
[2026-02-04 15:57:20] 2026-02-04 06:57:20,179 [wrapper] ==== wrapper stdout END ====
[2026-02-04 15:57:20] 2026-02-04 06:57:20,180 [wrapper] ==== wrapper stderr END ====
[2026-02-04 15:57:20]  *** Error codes and diagnostics ***
[2026-02-04 15:57:20]     "exeErrorCode": 0,
[2026-02-04 15:57:20]     "exeErrorDiag": "",
[2026-02-04 15:57:20]     "pilotErrorCode": 0,
[2026-02-04 15:57:20]     "pilotErrorDiag": "",
[2026-02-04 15:57:20]  *** Listing of results directory ***
[2026-02-04 15:57:20] total 669340
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc    621528 Jan 14 20:27 pilot3.tar.gz
[2026-02-04 15:57:20] -rwx------. 1 boinc boinc     36322 Feb  3 18:34 runpilot2-wrapper.sh
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc      5111 Feb  3 18:36 queuedata.json
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc       100 Feb  4 14:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 15:57:20] -rwxr-xr-x. 1 boinc boinc      7986 Feb  4 14:34 run_atlas
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc       105 Feb  4 14:34 job.xml
[2026-02-04 15:57:20] -rw-r--r--. 2 boinc boinc 497080439 Feb  4 14:34 EVNT.48318040._000129.pool.root.1
[2026-02-04 15:57:20] -rw-r--r--. 2 boinc boinc     15845 Feb  4 14:34 start_atlas.sh
[2026-02-04 15:57:20] drwxrwx--x. 2 boinc boinc        68 Feb  4 14:34 shared
[2026-02-04 15:57:20] -rw-r--r--. 2 boinc boinc    634119 Feb  4 14:34 input.tar.gz
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc         0 Feb  4 14:34 boinc_lockfile
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc      2535 Feb  4 14:35 pandaJob.out
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc   1009236 Feb  4 14:35 agis_schedconf.cvmfs.json
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc   1511668 Feb  4 14:36 agis_ddmendpoints.agis.ALL.json
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc       424 Feb  4 14:36 workernode_map.json
[2026-02-04 15:57:20] drwx------. 5 boinc boinc      4096 Feb  4 14:36 pilot3
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc      9533 Feb  4 15:35 init_data.xml
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc 182229851 Feb  4 15:55 HITS.48318042._006678.pool.root.1
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc      1016 Feb  4 15:56 memory_monitor_summary.json
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc       530 Feb  4 15:56 boinc_task_state.xml
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc        95 Feb  4 15:56 pilot_heartbeat.json
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc    298670 Feb  4 15:56 log.48318042._006678.job.log.tgz.1
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc      6315 Feb  4 15:56 heartbeat.json
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc        27 Feb  4 15:56 wrapper_checkpoint.txt
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc      8192 Feb  4 15:56 boinc_mmap_file
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc      6035 Feb  4 15:57 pilotlog.txt
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc    748068 Feb  4 15:57 log.48318042._006678.job.log.1
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc       357 Feb  4 15:57 output.list
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc       620 Feb  4 15:57 runtime_log
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc   1064960 Feb  4 15:57 result.tar.gz
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc       640 Feb  4 15:57 Ud5NDmEzR78n9Rq4apOajLDm4fhM0noT9bVooX4SDmCNUKDmX6cSNn.diag
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc      8774 Feb  4 15:57 runtime_log.err
[2026-02-04 15:57:20] -rw-r--r--. 1 boinc boinc     21586 Feb  4 15:57 stderr.txt
[2026-02-04 15:57:20] HITS file was successfully produced:
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc 182229851 Feb  4 15:55 shared/HITS.pool.root.1
[2026-02-04 15:57:20]  *** Contents of shared directory: ***
[2026-02-04 15:57:20] total 665068
[2026-02-04 15:57:20] -rw-r--r--. 2 boinc boinc 497080439 Feb  4 14:34 ATLAS.root_0
[2026-02-04 15:57:20] -rw-r--r--. 2 boinc boinc     15845 Feb  4 14:34 start_atlas.sh
[2026-02-04 15:57:20] -rw-r--r--. 2 boinc boinc    634119 Feb  4 14:34 input.tar.gz
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc 182229851 Feb  4 15:55 HITS.pool.root.1
[2026-02-04 15:57:20] -rw-------. 1 boinc boinc   1064960 Feb  4 15:57 result.tar.gz
15:57:21 (1276744): run_atlas exited; CPU time 26949.624254
15:57:21 (1276744): called boinc_finish(0)

</stderr_txt>
]]>

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