Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:37:25 (3862930): wrapper (7.7.26015): starting
23:37:25 (3862930): wrapper: running run_atlas (--nthreads 6)
[2026-02-03 23:37:25] Arguments: --nthreads 6
[2026-02-03 23:37:25] Threads: 6
[2026-02-03 23:37:25] Checking for CVMFS
[2026-02-03 23:37:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 23:37:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 23:37:43] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 23:37:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 23:37:44] 2.13.3.0 3793838 442 61168 155832 0 50 14950131 20971520 929 130560 0 227988 99.982 15290 13 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-02-03 23:37:44] CVMFS is ok
[2026-02-03 23:37:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 23:37:44] Checking for apptainer binary...
[2026-02-03 23:37:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 23:37:44] Running /usr/bin/apptainer --version
[2026-02-03 23:37:44] apptainer version 1.4.5-2.el9
[2026-02-03 23:37:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 23:37:44] testio005
[2026-02-03 23:37:44] apptainer works
[2026-02-03 23:37:44] Set ATHENA_PROC_NUMBER=6
[2026-02-03 23:37:44] Set ATHENA_CORE_NUMBER=6
[2026-02-03 23:37:44] Starting ATLAS job with PandaID=6993748200
[2026-02-03 23:37:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 03:56:39]  *** The last 200 lines of the pilot log: ***
[2026-02-04 03:56:39] 2026-02-03 18:55:42,173 | INFO     | monitor loop #1160: job 0:6993748200 is in state 'finished'
[2026-02-04 03:56:39] 2026-02-03 18:55:42,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,909 | INFO     | job 6993748200 has state=finished
[2026-02-04 03:56:39] 2026-02-03 18:55:42,909 | INFO     | preparing for final server update for job 6993748200 in state='finished'
[2026-02-04 03:56:39] 2026-02-03 18:55:42,909 | INFO     | reading metadata from: /var/lib/boinc/slots/6/PanDA_Pilot-6993748200/jobReport.json
[2026-02-04 03:56:39] 2026-02-03 18:55:42,911 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/6/workernode_map.json
[2026-02-04 03:56:39] 2026-02-03 18:55:42,912 | INFO     | this job has now completed (state=finished)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,912 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,912 | INFO     | log transfer has been attempted: DONE
[2026-02-04 03:56:39] 2026-02-03 18:55:42,912 | INFO     | job 6993748200 has finished - writing final server update
[2026-02-04 03:56:39] 2026-02-03 18:55:42,912 | INFO     | total number of processed events: 400 (read)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,916 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6993748200/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,916 | INFO     | extracted standard info from prmon json
[2026-02-04 03:56:39] 2026-02-03 18:55:42,917 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 03:56:39] 2026-02-03 18:55:42,917 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 03:56:39] 2026-02-03 18:55:42,917 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 03:56:39] 2026-02-03 18:55:42,917 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 03:56:39] 2026-02-03 18:55:42,921 | INFO     | fitting pss+swap vs Time
[2026-02-04 03:56:39] 2026-02-03 18:55:42,922 | INFO     | sum of square deviations: 4962187923.0
[2026-02-04 03:56:39] 2026-02-03 18:55:42,923 | INFO     | sum of deviations: -30123361050.999996
[2026-02-04 03:56:39] 2026-02-03 18:55:42,923 | INFO     | mean x: 1770137224.5
[2026-02-04 03:56:39] 2026-02-03 18:55:42,924 | INFO     | mean y: 2495458.0555555555
[2026-02-04 03:56:39] 2026-02-03 18:55:42,924 | INFO     | intersect: 10748255907.045414
[2026-02-04 03:56:39] 2026-02-03 18:55:42,924 | INFO     | chi2: 1.9619389337793312
[2026-02-04 03:56:39] 2026-02-03 18:55:42,924 | INFO     | sum of square deviations: 4672638308.0
[2026-02-04 03:56:39] 2026-02-03 18:55:42,926 | INFO     | sum of deviations: -29412391411.000004
[2026-02-04 03:56:39] 2026-02-03 18:55:42,926 | INFO     | mean x: 1770137072.0
[2026-02-04 03:56:39] 2026-02-03 18:55:42,926 | INFO     | mean y: 2495832.5668016193
[2026-02-04 03:56:39] 2026-02-03 18:55:42,926 | INFO     | intersect: 11144801523.90333
[2026-02-04 03:56:39] 2026-02-03 18:55:42,927 | INFO     | chi2: 1.9596807517721195
[2026-02-04 03:56:39] 2026-02-03 18:55:42,927 | INFO     | current chi2=1.9596807517721195 (change=0.11509950530731484 %)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,927 | INFO     | right removable region: 246
[2026-02-04 03:56:39] 2026-02-03 18:55:42,927 | INFO     | sum of square deviations: 4672638308.0
[2026-02-04 03:56:39] 2026-02-03 18:55:42,929 | INFO     | sum of deviations: -69921020334.99997
[2026-02-04 03:56:39] 2026-02-03 18:55:42,929 | INFO     | mean x: 1770137377.0
[2026-02-04 03:56:39] 2026-02-03 18:55:42,929 | INFO     | mean y: 2516227.0283400808
[2026-02-04 03:56:39] 2026-02-03 18:55:42,929 | INFO     | intersect: 26490723397.066483
[2026-02-04 03:56:39] 2026-02-03 18:55:42,930 | INFO     | chi2: 0.37966409469669615
[2026-02-04 03:56:39] 2026-02-03 18:55:42,930 | INFO     | current chi2=0.37966409469669615 (change=80.6485264062047 %)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,930 | INFO     | sum of square deviations: 4394577280.5
[2026-02-04 03:56:39] 2026-02-03 18:55:42,932 | INFO     | sum of deviations: -62939241667.00001
[2026-02-04 03:56:39] 2026-02-03 18:55:42,932 | INFO     | mean x: 1770137529.5
[2026-02-04 03:56:39] 2026-02-03 18:55:42,932 | INFO     | mean y: 2512375.8181818184
[2026-02-04 03:56:39] 2026-02-03 18:55:42,932 | INFO     | intersect: 25354464712.028065
[2026-02-04 03:56:39] 2026-02-03 18:55:42,933 | INFO     | chi2: 0.36796977296055944
[2026-02-04 03:56:39] 2026-02-03 18:55:42,933 | INFO     | current chi2=0.36796977296055944 (change=3.080175844776422 %)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,933 | INFO     | left removable region: 20
[2026-02-04 03:56:39] 2026-02-03 18:55:42,933 | INFO     | sum of square deviations: 3579276412.5
[2026-02-04 03:56:39] 2026-02-03 18:55:42,935 | INFO     | sum of deviations: -38093861024.999985
[2026-02-04 03:56:39] 2026-02-03 18:55:42,935 | INFO     | mean x: 1770137651.5
[2026-02-04 03:56:39] 2026-02-03 18:55:42,935 | INFO     | mean y: 2498952.548672566
[2026-02-04 03:56:39] 2026-02-03 18:55:42,935 | INFO     | intersect: 18841887119.34923
[2026-02-04 03:56:39] 2026-02-03 18:55:42,935 | INFO     | chi2: 0.28263895829893465
[2026-02-04 03:56:39] 2026-02-03 18:55:42,935 | INFO     | current memory leak: -10.64 B/s (using 226 data points, chi2=0.28)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,936 | INFO     | could have reported an average CPU frequency of 3304 MHz (12 samples)
[2026-02-04 03:56:39] 2026-02-03 18:55:42,936 | INFO     | ..............................
[2026-02-04 03:56:39] 2026-02-03 18:55:42,936 | INFO     | . Timing measurements:
[2026-02-04 03:56:39] 2026-02-03 18:55:42,936 | INFO     | . get job = 0 s
[2026-02-04 03:56:39] 2026-02-03 18:55:42,936 | INFO     | . initial setup = 10 s
[2026-02-04 03:56:39] 2026-02-03 18:55:42,936 | INFO     | . payload setup = 6 s
[2026-02-04 03:56:39] 2026-02-03 18:55:42,936 | INFO     | . stage-in = 0 s
[2026-02-04 03:56:39] 2026-02-03 18:55:42,937 | INFO     | . payload execution = 15365 s
[2026-02-04 03:56:39] 2026-02-03 18:55:42,937 | INFO     | . stage-out = 5 s
[2026-02-04 03:56:39] 2026-02-03 18:55:42,937 | INFO     | . log creation = 0 s
[2026-02-04 03:56:39] 2026-02-03 18:55:42,937 | INFO     | ..............................
[2026-02-04 03:56:39] 2026-02-03 18:55:43,025 | INFO     | 
[2026-02-04 03:56:39] 2026-02-03 18:55:43,025 | INFO     | job summary report
[2026-02-04 03:56:39] 2026-02-03 18:55:43,025 | INFO     | --------------------------------------------------
[2026-02-04 03:56:39] 2026-02-03 18:55:43,025 | INFO     | PanDA job id: 6993748200
[2026-02-04 03:56:39] 2026-02-03 18:55:43,025 | INFO     | task id: 48329817
[2026-02-04 03:56:39] 2026-02-03 18:55:43,025 | INFO     | errors: (none)
[2026-02-04 03:56:39] 2026-02-03 18:55:43,025 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 03:56:39] 2026-02-03 18:55:43,025 | INFO     | pilot state: finished 
[2026-02-04 03:56:39] 2026-02-03 18:55:43,025 | INFO     | transexitcode: 0
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | exeerrorcode: 0
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | exeerrordiag: 
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | exitcode: 0
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | exitmsg: OK
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | cpuconsumptiontime: 87587 s
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | nevents: 400
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | neventsw: 0
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | pid: 3871651
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | pgrp: 3871651
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | corecount: 6
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | event service: False
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | sizes: {0: 2278136, 1: 2278398, 11: 2278426, 15374: 2309731, 15375: 2309730, 15381: 2318784, 15382: 2318968, 15385: 2319162}
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | --------------------------------------------------
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | 
[2026-02-04 03:56:39] 2026-02-03 18:55:43,026 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-02-04 03:56:39] 2026-02-03 18:55:43,045 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,046 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,046 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,046 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,046 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,046 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,046 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,046 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,046 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 03:56:39] 2026-02-03 18:55:43,047 | INFO     | job 6993748200 has completed (purged errors)
[2026-02-04 03:56:39] 2026-02-03 18:55:43,048 | INFO     | overall cleanup function is called
[2026-02-04 03:56:39] 2026-02-03 18:55:44,055 | INFO     | --- collectZombieJob: --- 10, [3871651]
[2026-02-04 03:56:39] 2026-02-03 18:55:44,055 | INFO     | zombie collector waiting for pid 3871651
[2026-02-04 03:56:39] 2026-02-03 18:55:44,055 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 03:56:39] 2026-02-03 18:55:44,055 | INFO     | collected zombie processes
[2026-02-04 03:56:39] 2026-02-03 18:55:44,055 | INFO     | will attempt to kill all subprocesses of pid=3871651
[2026-02-04 03:56:39] 2026-02-03 18:55:44,160 | INFO     | process IDs to be killed: [3871651] (in reverse order)
[2026-02-04 03:56:39] 2026-02-03 18:55:44,203 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 03:56:39] 2026-02-03 18:55:44,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 03:56:39] 2026-02-03 18:55:44,206 | INFO     | did not find any defunct processes belonging to 3871651
[2026-02-04 03:56:39] 2026-02-03 18:55:44,209 | INFO     | did not find any defunct processes belonging to 3871651
[2026-02-04 03:56:39] 2026-02-03 18:55:44,209 | INFO     | ready for new job
[2026-02-04 03:56:39] 2026-02-03 18:55:44,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 03:56:39] 2026-02-03 18:55:44,211 | INFO     | **************************************
[2026-02-04 03:56:39] 2026-02-03 18:55:44,211 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 03:56:39] 2026-02-03 18:55:44,211 | INFO     | **************************************
[2026-02-04 03:56:39] 2026-02-03 18:55:44,211 | INFO     | 
[2026-02-04 03:56:39] 2026-02-03 18:55:44,212 | INFO     | architecture information:
[2026-02-04 03:56:39] 2026-02-03 18:55:44,213 | INFO     | executing command: cat /etc/os-release
[2026-02-04 03:56:39] 2026-02-03 18:55:44,225 | INFO     | cat /etc/os-release:
[2026-02-04 03:56:39] NAME="CentOS Linux"
[2026-02-04 03:56:39] VERSION="7 (Core)"
[2026-02-04 03:56:39] ID="centos"
[2026-02-04 03:56:39] ID_LIKE="rhel fedora"
[2026-02-04 03:56:39] VERSION_ID="7"
[2026-02-04 03:56:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 03:56:39] ANSI_COLOR="0;31"
[2026-02-04 03:56:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 03:56:39] HOME_URL="https://www.centos.org/"
[2026-02-04 03:56:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 03:56:39] 
[2026-02-04 03:56:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 03:56:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 03:56:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 03:56:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 03:56:39] 
[2026-02-04 03:56:39] 2026-02-03 18:55:44,226 | INFO     | **************************************
[2026-02-04 03:56:39] 2026-02-03 18:55:44,728 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-02-04 03:56:39] 2026-02-03 18:55:44,744 | INFO     | sufficient remaining disk space (93148151808 B)
[2026-02-04 03:56:39] 2026-02-03 18:55:44,744 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 03:56:39] 2026-02-03 18:55:44,744 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 03:56:39] 2026-02-03 18:55:44,744 | INFO     | update_server=False
[2026-02-04 03:56:39] 2026-02-03 18:55:44,744 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 03:56:39] 2026-02-03 18:55:44,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 03:56:39] 2026-02-03 18:55:44,951 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 03:56:39] 2026-02-03 18:55:45,048 | INFO     | all job control threads have been joined
[2026-02-04 03:56:39] 2026-02-03 18:55:45,640 | INFO     | all data control threads have been joined
[2026-02-04 03:56:39] 2026-02-03 18:55:45,681 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 03:56:39] 2026-02-03 18:55:45,681 | INFO     | aborting loop
[2026-02-04 03:56:39] 2026-02-03 18:55:45,749 | INFO     | [job] retrieve thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:45,750 | INFO     | [job] queue monitor thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:45,894 | INFO     | all payload control threads have been joined
[2026-02-04 03:56:39] 2026-02-03 18:55:45,923 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:45,951 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:46,053 | INFO     | [job] control thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:46,360 | INFO     | [job] validate thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:46,645 | INFO     | [data] control thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:46,686 | INFO     | [job] job monitor thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:46,686 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:46,688 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:46,705 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 03:56:39] 2026-02-03 18:55:46,729 | INFO     | [data] copytool_in thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:46,900 | INFO     | [payload] control thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:46,957 | INFO     | [data] copytool_out thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:47,172 | INFO     | [payload] validate_post thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:47,172 | INFO     | [payload] failed_post thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:55:50,710 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 03:56:39] 2026-02-03 18:56:14,683 | INFO     | PID=3867062 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 03:56:39] 2026-02-03 18:56:14,683 | INFO     | .. there are 2 such processes running
[2026-02-04 03:56:39] 2026-02-03 18:56:14,683 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 03:56:39] 2026-02-03 18:56:14,683 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 03:56:39] 2026-02-03 18:56:14,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 03:56:39] 2026-02-03 18:56:32,638 | INFO     | [monitor] cgroup control has ended
[2026-02-04 03:56:39] 2026-02-03 18:56:34,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140193693435712)>', '<ExcThread(monitor, started 140193327720192)>']
[2026-02-04 03:56:39] 2026-02-03 18:56:34,773 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 03:56:39] 2026-02-03 18:56:34,773 | INFO     | [monitor] control thread has ended
[2026-02-04 03:56:39] 2026-02-03 18:56:39,382 | INFO     | all workflow threads have been joined
[2026-02-04 03:56:39] 2026-02-03 18:56:39,382 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 03:56:39] 2026-02-03 18:56:39,382 | INFO     | traces error code: 0
[2026-02-04 03:56:39] 2026-02-03 18:56:39,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 03:56:39] 2026-02-03 18:56:39,487 [wrapper] ==== pilot stdout END ====
[2026-02-04 03:56:39] 2026-02-03 18:56:39,490 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 03:56:39] 2026-02-03 18:56:39,492 [wrapper] pilotpid: 3867062
[2026-02-04 03:56:39] 2026-02-03 18:56:39,495 [wrapper] Pilot exit status: 0
[2026-02-04 03:56:39] 2026-02-03 18:56:39,503 [wrapper] pandaids: 6993748200
[2026-02-04 03:56:39] 2026-02-03 18:56:39,531 [wrapper] cleanup supervisor_pilot 3877544 3867063
[2026-02-04 03:56:39] 2026-02-03 18:56:39,534 [wrapper] Test setup, not cleaning
[2026-02-04 03:56:39] 2026-02-03 18:56:39,536 [wrapper] apfmon messages muted
[2026-02-04 03:56:39] 2026-02-03 18:56:39,539 [wrapper] ==== wrapper stdout END ====
[2026-02-04 03:56:39] 2026-02-03 18:56:39,542 [wrapper] ==== wrapper stderr END ====
[2026-02-04 03:56:39]  *** Error codes and diagnostics ***
[2026-02-04 03:56:39]     "exeErrorCode": 0,
[2026-02-04 03:56:39]     "exeErrorDiag": "",
[2026-02-04 03:56:39]     "pilotErrorCode": 0,
[2026-02-04 03:56:39]     "pilotErrorDiag": "",
[2026-02-04 03:56:39]  *** Listing of results directory ***
[2026-02-04 03:56:39] total 474284
[2026-02-04 03:56:39] -rwx------. 1 boinc boinc     36322 Feb  3 13:58 runpilot2-wrapper.sh
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc      5111 Feb  3 13:59 queuedata.json
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc    584422 Feb  3 13:59 pilot3.tar.gz
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc       100 Feb  3 23:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 03:56:39] -rwxr-xr-x. 1 boinc boinc      7986 Feb  3 23:37 run_atlas
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc       105 Feb  3 23:37 job.xml
[2026-02-04 03:56:39] -rw-r--r--. 2 boinc boinc 270500103 Feb  3 23:37 EVNT.48329815._000004.pool.root.1
[2026-02-04 03:56:39] -rw-r--r--. 2 boinc boinc     15845 Feb  3 23:37 start_atlas.sh
[2026-02-04 03:56:39] drwxrwx--x. 2 boinc boinc        68 Feb  3 23:37 shared
[2026-02-04 03:56:39] -rw-r--r--. 2 boinc boinc    597775 Feb  3 23:37 input.tar.gz
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc         0 Feb  3 23:37 boinc_lockfile
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc      2617 Feb  3 23:37 pandaJob.out
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc   1009258 Feb  3 23:38 agis_schedconf.cvmfs.json
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc       424 Feb  3 23:39 workernode_map.json
[2026-02-04 03:56:39] drwx------. 5 boinc boinc      4096 Feb  3 23:39 pilot3
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc      9364 Feb  4 03:25 init_data.xml
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc 205954718 Feb  4 03:55 HITS.48329817._000085.pool.root.1
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc       531 Feb  4 03:55 boinc_task_state.xml
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc      1016 Feb  4 03:55 memory_monitor_summary.json
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc        95 Feb  4 03:55 pilot_heartbeat.json
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc   1511668 Feb  4 03:55 agis_ddmendpoints.agis.ALL.json
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc    438862 Feb  4 03:55 log.48329817._000085.job.log.tgz.1
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc      6287 Feb  4 03:55 heartbeat.json
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc      8192 Feb  4 03:56 boinc_mmap_file
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc        28 Feb  4 03:56 wrapper_checkpoint.txt
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc      4819 Feb  4 03:56 pilotlog.txt
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc   2197352 Feb  4 03:56 log.48329817._000085.job.log.1
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc       357 Feb  4 03:56 output.list
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc       620 Feb  4 03:56 runtime_log
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc   2652160 Feb  4 03:56 result.tar.gz
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc       647 Feb  4 03:56 VddNDmvfN78n9Rq4apOajLDm4fhM0noT9bVooX4SDmIuTKDmPcPObm.diag
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc      8775 Feb  4 03:56 runtime_log.err
[2026-02-04 03:56:39] -rw-r--r--. 1 boinc boinc     20995 Feb  4 03:56 stderr.txt
[2026-02-04 03:56:39] HITS file was successfully produced:
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc 205954718 Feb  4 03:55 shared/HITS.pool.root.1
[2026-02-04 03:56:39]  *** Contents of shared directory: ***
[2026-02-04 03:56:39] total 468488
[2026-02-04 03:56:39] -rw-r--r--. 2 boinc boinc 270500103 Feb  3 23:37 ATLAS.root_0
[2026-02-04 03:56:39] -rw-r--r--. 2 boinc boinc     15845 Feb  3 23:37 start_atlas.sh
[2026-02-04 03:56:39] -rw-r--r--. 2 boinc boinc    597775 Feb  3 23:37 input.tar.gz
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc 205954718 Feb  4 03:55 HITS.pool.root.1
[2026-02-04 03:56:39] -rw-------. 1 boinc boinc   2652160 Feb  4 03:56 result.tar.gz
03:56:41 (3862930): run_atlas exited; CPU time 87780.964633
03:56:41 (3862930): called boinc_finish(0)

</stderr_txt>
]]>

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