Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
21:28:10 (603324): wrapper (7.7.26015): starting
21:28:10 (603324): wrapper: running run_atlas (--nthreads 4)
[2026-02-05 21:28:10] Arguments: --nthreads 4
[2026-02-05 21:28:10] Threads: 4
[2026-02-05 21:28:10] Checking for CVMFS
[2026-02-05 21:28:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-05 21:28:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-05 21:28:11] Running cvmfs_config stat atlas.cern.ch
[2026-02-05 21:28:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-05 21:28:11] 2.12.7.0 3853683 2614 47188 155916 3 49 4077071 6144000 0 130560 0 993420 99.982 94860 1227 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-05 21:28:11] CVMFS is ok
[2026-02-05 21:28:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-05 21:28:11] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-05 21:28:11] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-05 21:28:11] Further information can be found at the LHC@home message board.
[2026-02-05 21:28:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-05 21:28:11] Checking for apptainer binary...
[2026-02-05 21:28:11] apptainer is not installed, using version from CVMFS
[2026-02-05 21:28:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-05 21:28:11] biggy
[2026-02-05 21:28:11] apptainer works
[2026-02-05 21:28:11] Set ATHENA_PROC_NUMBER=4
[2026-02-05 21:28:11] Set ATHENA_CORE_NUMBER=4
[2026-02-05 21:28:11] Starting ATLAS job with PandaID=6993746382
[2026-02-05 21:28:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/single_8TB/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-05 22:45:34]  *** The last 200 lines of the pilot log: ***
[2026-02-05 22:45:34]  status_code=0
[2026-02-05 22:45:34]  storage_token=
[2026-02-05 22:45:34]  surl=/single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382/log.48318034._006807.job.log.tgz.1
[2026-02-05 22:45:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/b5/log.48318034._006807.job.log.tgz.1
[2026-02-05 22:45:34]  workdir=None
[2026-02-05 22:45:34] ]
[2026-02-05 22:45:34] 2026-02-05 21:44:49,241 | INFO     | transferring file log.48318034._006807.job.log.tgz.1 from /single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382/log.48318034._006807.job.log.tgz.1 to /single_8TB
[2026-02-05 22:45:34] 2026-02-05 21:44:49,241 | INFO     | executing command: /usr/bin/env mv /single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382/log.48318034._006807.job.log.tgz.1 /single_8TB/boinc-client/slots/0/log.
[2026-02-05 22:45:34] 2026-02-05 21:44:49,249 | INFO     | adding to output.list: log.48318034._006807.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/b5/log.48318034._006807.job.log.tg
[2026-02-05 22:45:34] 2026-02-05 21:44:49,249 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-05 22:45:34] 2026-02-05 21:44:49,249 | INFO     | summary of transferred files:
[2026-02-05 22:45:34] 2026-02-05 21:44:49,249 | INFO     |  -- lfn=log.48318034._006807.job.log.tgz.1, status_code=0, status=transferred
[2026-02-05 22:45:34] 2026-02-05 21:44:49,249 | INFO     | stage-out finished correctly
[2026-02-05 22:45:34] 2026-02-05 21:44:49,832 | INFO     | time since job start (4588s) is within the limit (349056.0s)
[2026-02-05 22:45:34] 2026-02-05 21:44:51,123 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-05 22:45:34] 2026-02-05 21:44:51,837 | INFO     | time since job start (4590s) is within the limit (349056.0s)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,219 | WARNING  | process 611864 can no longer be monitored (due to stat problems) - aborting
[2026-02-05 22:45:34] 2026-02-05 21:44:53,219 | INFO     | using path: /single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,219 | INFO     | using path: /single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,220 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-05 22:45:34] 2026-02-05 21:44:53,220 | WARNING  | maxPSS not found in memory monitor output
[2026-02-05 22:45:34] 2026-02-05 21:44:53,220 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2958964 B
[2026-02-05 22:45:34] 2026-02-05 21:44:53,220 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15861 B
[2026-02-05 22:45:34] 2026-02-05 21:44:53,220 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/0
[2026-02-05 22:45:34] 2026-02-05 21:44:53,227 | INFO     | sufficient remaining disk space (3330958950400 B)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,228 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,228 | INFO     | size of work directory /single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382: 3257009 B (within 5033164800 B limit)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,228 | INFO     | pfn file=/single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382/HITS.48318034._006807.pool.root.1 does not exist (skip from workdir size calculation)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,228 | INFO     | total size of present files: 0 B (workdir size: 3257009 B)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,228 | INFO     | output file size check: skipping output file /single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382/HITS.48318034._006807.pool.root.1 since it does not exist
[2026-02-05 22:45:34] 2026-02-05 21:44:53,296 | INFO     | number of running child processes to parent process 611864: 1
[2026-02-05 22:45:34] 2026-02-05 21:44:53,296 | INFO     | maximum number of monitored processes: 6
[2026-02-05 22:45:34] 2026-02-05 21:44:53,321 | INFO     | job 6993746382 has state=finished
[2026-02-05 22:45:34] 2026-02-05 21:44:53,321 | INFO     | preparing for final server update for job 6993746382 in state='finished'
[2026-02-05 22:45:34] 2026-02-05 21:44:53,321 | INFO     | reading metadata from: /single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382/jobReport.json
[2026-02-05 22:45:34] 2026-02-05 21:44:53,322 | INFO     | added worker_node to metadata from /single_8TB/boinc-client/slots/0/workernode_map.json
[2026-02-05 22:45:34] 2026-02-05 21:44:53,322 | INFO     | this job has now completed (state=finished)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,322 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,322 | INFO     | log transfer has been attempted: DONE
[2026-02-05 22:45:34] 2026-02-05 21:44:53,322 | INFO     | job 6993746382 has finished - writing final server update
[2026-02-05 22:45:34] 2026-02-05 21:44:53,322 | INFO     | total number of processed events: 400 (read)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,324 | INFO     | using path: /single_8TB/boinc-client/slots/0/PanDA_Pilot-6993746382/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,324 | INFO     | extracted standard info from prmon json
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | INFO     | extracted standard memory fields from prmon json
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | INFO     | fitting pss+swap vs Time
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | INFO     | sum of square deviations: 97479037.0
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | INFO     | sum of deviations: -13833860447.5
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | INFO     | mean x: 1770325664.5
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | INFO     | mean y: 2618809.25
[2026-02-05 22:45:34] 2026-02-05 21:44:53,325 | INFO     | intersect: 251240617696.341
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | chi2: 0.1331660906977984
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | current memory leak: -141.92 B/s (using 68 data points, chi2=0.13)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | could have reported an average CPU frequency of 5049 MHz (6 samples)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | ..............................
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | . Timing measurements:
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | . get job = 0 s
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | . initial setup = 2 s
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | . payload setup = 1 s
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | . stage-in = 0 s
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | . payload execution = 4571 s
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | . stage-out = 0 s
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | . log creation = 0 s
[2026-02-05 22:45:34] 2026-02-05 21:44:53,326 | INFO     | ..............................
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | 
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | job summary report
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | --------------------------------------------------
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | PanDA job id: 6993746382
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | task id: 48318034
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | errors: (none)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | pilot state: finished 
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | transexitcode: 0
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | exeerrorcode: 0
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | exeerrordiag: 
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | exitcode: 0
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | exitmsg: OK
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | cpuconsumptiontime: 17667 s
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | nevents: 400
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | neventsw: 0
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | pid: 611864
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | pgrp: 611864
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | corecount: 4
[2026-02-05 22:45:34] 2026-02-05 21:44:53,350 | INFO     | event service: False
[2026-02-05 22:45:34] 2026-02-05 21:44:53,351 | INFO     | sizes: {0: 2283062, 10: 2283062, 4577: 2309295, 4578: 2318313, 4580: 2318369, 4582: 2318591}
[2026-02-05 22:45:34] 2026-02-05 21:44:53,351 | INFO     | --------------------------------------------------
[2026-02-05 22:45:34] 2026-02-05 21:44:53,351 | INFO     | 
[2026-02-05 22:45:34] 2026-02-05 21:44:53,351 | INFO     | executing command: ls -lF /single_8TB/boinc-client/slots/0
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,360 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-05 22:45:34] 2026-02-05 21:44:53,361 | INFO     | job 6993746382 has completed (purged errors)
[2026-02-05 22:45:34] 2026-02-05 21:44:53,361 | INFO     | overall cleanup function is called
[2026-02-05 22:45:34] 2026-02-05 21:44:54,367 | INFO     | --- collectZombieJob: --- 10, [611864]
[2026-02-05 22:45:34] 2026-02-05 21:44:54,367 | INFO     | zombie collector waiting for pid 611864
[2026-02-05 22:45:34] 2026-02-05 21:44:54,367 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-05 22:45:34] 2026-02-05 21:44:54,367 | INFO     | collected zombie processes
[2026-02-05 22:45:34] 2026-02-05 21:44:54,367 | INFO     | will attempt to kill all subprocesses of pid=611864
[2026-02-05 22:45:34] 2026-02-05 21:44:54,439 | INFO     | process IDs to be killed: [611864] (in reverse order)
[2026-02-05 22:45:34] 2026-02-05 21:44:54,473 | WARNING  | found no corresponding commands to process id(s)
[2026-02-05 22:45:34] 2026-02-05 21:44:54,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-05 22:45:34] 2026-02-05 21:44:54,477 | INFO     | did not find any defunct processes belonging to 611864
[2026-02-05 22:45:34] 2026-02-05 21:44:54,479 | INFO     | did not find any defunct processes belonging to 611864
[2026-02-05 22:45:34] 2026-02-05 21:44:54,480 | INFO     | ready for new job
[2026-02-05 22:45:34] 2026-02-05 21:44:54,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-05 22:45:34] 2026-02-05 21:44:54,480 | INFO     | **************************************
[2026-02-05 22:45:34] 2026-02-05 21:44:54,480 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-05 22:45:34] 2026-02-05 21:44:54,480 | INFO     | **************************************
[2026-02-05 22:45:34] 2026-02-05 21:44:54,480 | INFO     | 
[2026-02-05 22:45:34] 2026-02-05 21:44:54,481 | INFO     | architecture information:
[2026-02-05 22:45:34] 2026-02-05 21:44:54,481 | INFO     | executing command: cat /etc/os-release
[2026-02-05 22:45:34] 2026-02-05 21:44:54,488 | INFO     | cat /etc/os-release:
[2026-02-05 22:45:34] NAME="CentOS Linux"
[2026-02-05 22:45:34] VERSION="7 (Core)"
[2026-02-05 22:45:34] ID="centos"
[2026-02-05 22:45:34] ID_LIKE="rhel fedora"
[2026-02-05 22:45:34] VERSION_ID="7"
[2026-02-05 22:45:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-05 22:45:34] ANSI_COLOR="0;31"
[2026-02-05 22:45:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-05 22:45:34] HOME_URL="https://www.centos.org/"
[2026-02-05 22:45:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-05 22:45:34] 
[2026-02-05 22:45:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-05 22:45:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-05 22:45:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-05 22:45:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-05 22:45:34] 
[2026-02-05 22:45:34] 2026-02-05 21:44:54,488 | INFO     | **************************************
[2026-02-05 22:45:34] 2026-02-05 21:44:54,990 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/0
[2026-02-05 22:45:34] 2026-02-05 21:44:54,997 | INFO     | sufficient remaining disk space (3330958950400 B)
[2026-02-05 22:45:34] 2026-02-05 21:44:54,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-05 22:45:34] 2026-02-05 21:44:54,997 | INFO     | current server update state: UPDATING_FINAL
[2026-02-05 22:45:34] 2026-02-05 21:44:54,997 | INFO     | update_server=False
[2026-02-05 22:45:34] 2026-02-05 21:44:54,997 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-05 22:45:34] 2026-02-05 21:44:54,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-05 22:45:34] 2026-02-05 21:44:54,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-05 22:45:34] 2026-02-05 21:44:54,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-05 22:45:34] 2026-02-05 21:44:54,998 | INFO     | aborting loop
[2026-02-05 22:45:34] 2026-02-05 21:44:55,561 | INFO     | all job control threads have been joined
[2026-02-05 22:45:34] 2026-02-05 21:44:56,001 | INFO     | [job] retrieve thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:56,002 | INFO     | [job] queue monitor thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:56,002 | INFO     | [job] job monitor thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:56,090 | INFO     | all data control threads have been joined
[2026-02-05 22:45:34] 2026-02-05 21:44:56,143 | INFO     | all payload control threads have been joined
[2026-02-05 22:45:34] 2026-02-05 21:44:56,184 | INFO     | [payload] failed_post thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:56,566 | INFO     | [job] control thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:56,933 | INFO     | [payload] execute_payloads thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:57,003 | INFO     | [data] copytool_out thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:57,095 | INFO     | [data] control thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:57,148 | INFO     | [payload] control thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:57,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-05 22:45:34] 2026-02-05 21:44:57,293 | INFO     | [job] validate thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:57,298 | INFO     | [job] create_data_payload thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:57,305 | INFO     | [payload] validate_pre thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:57,366 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:57,456 | INFO     | [payload] validate_post thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:44:57,462 | INFO     | [data] copytool_in thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:45:01,154 | INFO     | [data] queue_monitor thread has finished
[2026-02-05 22:45:34] 2026-02-05 21:45:24,982 | INFO     | PID=607462 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-05 22:45:34] 2026-02-05 21:45:24,983 | INFO     | found 0 job(s) in 20 queues
[2026-02-05 22:45:34] 2026-02-05 21:45:24,983 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-05 22:45:34] 2026-02-05 21:45:24,983 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-05 22:45:34] 2026-02-05 21:45:28,229 | INFO     | [monitor] cgroup control has ended
[2026-02-05 22:45:34] 2026-02-05 21:45:29,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872324097856)>', '<ExcThread(monitor, started 139871507179264)>']
[2026-02-05 22:45:34] 2026-02-05 21:45:30,007 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-05 22:45:34] 2026-02-05 21:45:30,007 | INFO     | [monitor] control thread has ended
[2026-02-05 22:45:34] 2026-02-05 21:45:34,835 | INFO     | all workflow threads have been joined
[2026-02-05 22:45:34] 2026-02-05 21:45:34,835 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-05 22:45:34] 2026-02-05 21:45:34,835 | INFO     | traces error code: 0
[2026-02-05 22:45:34] 2026-02-05 21:45:34,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-05 22:45:34] 2026-02-05 21:45:34,887 [wrapper] ==== pilot stdout END ====
[2026-02-05 22:45:34] 2026-02-05 21:45:34,888 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-05 22:45:34] 2026-02-05 21:45:34,889 [wrapper] pilotpid: 607462
[2026-02-05 22:45:34] 2026-02-05 21:45:34,890 [wrapper] Pilot exit status: 0
[2026-02-05 22:45:34] 2026-02-05 21:45:34,894 [wrapper] pandaids: 6993746382
[2026-02-05 22:45:34] 2026-02-05 21:45:34,916 [wrapper] cleanup supervisor_pilot  629692 607463
[2026-02-05 22:45:34] 2026-02-05 21:45:34,917 [wrapper] Test setup, not cleaning
[2026-02-05 22:45:34] 2026-02-05 21:45:34,918 [wrapper] apfmon messages muted
[2026-02-05 22:45:34] 2026-02-05 21:45:34,919 [wrapper] ==== wrapper stdout END ====
[2026-02-05 22:45:34] 2026-02-05 21:45:34,920 [wrapper] ==== wrapper stderr END ====
[2026-02-05 22:45:34]  *** Error codes and diagnostics ***
[2026-02-05 22:45:34]     "exeErrorCode": 0,
[2026-02-05 22:45:34]     "exeErrorDiag": "",
[2026-02-05 22:45:34]     "pilotErrorCode": 0,
[2026-02-05 22:45:34]     "pilotErrorDiag": "",
[2026-02-05 22:45:34]  *** Listing of results directory ***
[2026-02-05 22:45:35] total 666544
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc    584422 Feb  3 04:09 pilot3.tar.gz
[2026-02-05 22:45:35] -rwx------ 1 boinc boinc     36322 Feb  3 04:09 runpilot2-wrapper.sh
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc      5111 Feb  3 04:10 queuedata.json
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc       100 Feb  5 21:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc       105 Feb  5 21:28 job.xml
[2026-02-05 22:45:35] -rwxr-xr-x 1 boinc boinc      7986 Feb  5 21:28 run_atlas
[2026-02-05 22:45:35] -rw-r--r-- 2 boinc boinc 496489775 Feb  5 21:28 EVNT.48318032._000145.pool.root.1
[2026-02-05 22:45:35] -rw-r--r-- 2 boinc boinc    597768 Feb  5 21:28 input.tar.gz
[2026-02-05 22:45:35] drwxrwx--x 2 boinc boinc         5 Feb  5 21:28 shared
[2026-02-05 22:45:35] -rw-r--r-- 2 boinc boinc     15845 Feb  5 21:28 start_atlas.sh
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc         0 Feb  5 21:28 boinc_setup_complete
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc     12893 Feb  5 21:28 init_data.xml
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc         0 Feb  5 21:28 boinc_lockfile
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc      2536 Feb  5 21:28 pandaJob.out
[2026-02-05 22:45:35] -rw------- 1 boinc boinc   1007437 Feb  5 21:28 agis_schedconf.cvmfs.json
[2026-02-05 22:45:35] -rw------- 1 boinc boinc   1513144 Feb  5 21:28 agis_ddmendpoints.agis.ALL.json
[2026-02-05 22:45:35] -rw------- 1 boinc boinc       421 Feb  5 21:28 workernode_map.json
[2026-02-05 22:45:35] drwx------ 5 boinc boinc        22 Feb  5 21:28 pilot3
[2026-02-05 22:45:35] -rw------- 1 boinc boinc 180517975 Feb  5 22:44 HITS.48318034._006807.pool.root.1
[2026-02-05 22:45:35] -rw------- 1 boinc boinc      1039 Feb  5 22:44 memory_monitor_summary.json
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc       530 Feb  5 22:44 boinc_task_state.xml
[2026-02-05 22:45:35] -rw------- 1 boinc boinc    281022 Feb  5 22:44 log.48318034._006807.job.log.tgz.1
[2026-02-05 22:45:35] -rw------- 1 boinc boinc      6294 Feb  5 22:44 heartbeat.json
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc      8192 Feb  5 22:45 boinc_mmap_file
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc        27 Feb  5 22:45 wrapper_checkpoint.txt
[2026-02-05 22:45:35] -rw------- 1 boinc boinc        95 Feb  5 22:45 pilot_heartbeat.json
[2026-02-05 22:45:35] -rw------- 1 boinc boinc      4755 Feb  5 22:45 pilotlog.txt
[2026-02-05 22:45:35] -rw------- 1 boinc boinc    674863 Feb  5 22:45 log.48318034._006807.job.log.1
[2026-02-05 22:45:35] -rw------- 1 boinc boinc       357 Feb  5 22:45 output.list
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc       620 Feb  5 22:45 runtime_log
[2026-02-05 22:45:35] -rw------- 1 boinc boinc    972800 Feb  5 22:45 result.tar.gz
[2026-02-05 22:45:35] -rw------- 1 boinc boinc       650 Feb  5 22:45 eriKDmeyL78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm95TKDmnVD2am.diag
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc      8938 Feb  5 22:45 runtime_log.err
[2026-02-05 22:45:35] -rw-r--r-- 1 boinc boinc     22612 Feb  5 22:45 stderr.txt
[2026-02-05 22:45:35] HITS file was successfully produced:
[2026-02-05 22:45:35] -rw------- 1 boinc boinc 180517975 Feb  5 22:44 shared/HITS.pool.root.1
[2026-02-05 22:45:35]  *** Contents of shared directory: ***
[2026-02-05 22:45:35] total 662288
[2026-02-05 22:45:35] -rw-r--r-- 2 boinc boinc 496489775 Feb  5 21:28 ATLAS.root_0
[2026-02-05 22:45:35] -rw-r--r-- 2 boinc boinc    597768 Feb  5 21:28 input.tar.gz
[2026-02-05 22:45:35] -rw-r--r-- 2 boinc boinc     15845 Feb  5 21:28 start_atlas.sh
[2026-02-05 22:45:35] -rw------- 1 boinc boinc 180517975 Feb  5 22:44 HITS.pool.root.1
[2026-02-05 22:45:35] -rw------- 1 boinc boinc    972800 Feb  5 22:45 result.tar.gz
22:45:36 (603324): run_atlas exited; CPU time 17720.673243
22:45:36 (603324): called boinc_finish(0)

</stderr_txt>
]]>

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