Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:29:41 (2845576): wrapper (7.7.26015): starting
21:29:41 (2845576): wrapper: running run_atlas (--nthreads 4)
[2026-02-03 21:29:41] Arguments: --nthreads 4
[2026-02-03 21:29:41] Threads: 4
[2026-02-03 21:29:41] Checking for CVMFS
[2026-02-03 21:29:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 21:30:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 21:30:06] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 21:30:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 21:30:06] 2.9.2.0 1058158 8955 97636 155843 3 50 35752619 36864001 0 130560 0 5085270 99.988 301169 15885 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-03 21:30:06] CVMFS is ok
[2026-02-03 21:30:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 21:30:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 21:30:06] Further information can be found at the LHC@home message board.
[2026-02-03 21:30:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 21:30:06] Checking for apptainer binary...
[2026-02-03 21:30:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 21:30:06] Running /usr/bin/apptainer --version
[2026-02-03 21:30:06] apptainer version 1.4.1-1.1
[2026-02-03 21:30:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 21:30:06] thA315b
[2026-02-03 21:30:06] apptainer works
[2026-02-03 21:30:06] Set ATHENA_PROC_NUMBER=4
[2026-02-03 21:30:06] Set ATHENA_CORE_NUMBER=4
[2026-02-03 21:30:06] Starting ATLAS job with PandaID=6993748111
[2026-02-03 21:30:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 22:34:28]  *** The last 200 lines of the pilot log: ***
[2026-02-03 22:34:28] 2026-02-03 21:33:52,951 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 22:34:28] 2026-02-03 21:33:52,951 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 22:34:28] 2026-02-03 21:33:52,951 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 22:34:28] 2026-02-03 21:33:52,951 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 22:34:28] 2026-02-03 21:33:52,951 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 22:34:28] 2026-02-03 21:33:52,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 22:34:28] 2026-02-03 21:33:52,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 22:34:28] 2026-02-03 21:33:52,952 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 22:34:28] 2026-02-03 21:33:52,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 22:34:28] 2026-02-03 21:33:52,952 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 22:34:28] 2026-02-03 21:33:52,952 | INFO     | job 6993748111 has completed (purged errors)
[2026-02-03 22:34:28] 2026-02-03 21:33:52,952 | INFO     | overall cleanup function is called
[2026-02-03 22:34:28] 2026-02-03 21:33:53,958 | INFO     | --- collectZombieJob: --- 10, [2854187]
[2026-02-03 22:34:28] 2026-02-03 21:33:53,959 | INFO     | zombie collector waiting for pid 2854187
[2026-02-03 22:34:28] 2026-02-03 21:33:53,959 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 22:34:28] 2026-02-03 21:33:53,959 | INFO     | collected zombie processes
[2026-02-03 22:34:28] 2026-02-03 21:33:53,959 | INFO     | will attempt to kill all subprocesses of pid=2854187
[2026-02-03 22:34:28] 2026-02-03 21:33:54,004 | INFO     | process IDs to be killed: [2854187] (in reverse order)
[2026-02-03 22:34:28] 2026-02-03 21:33:54,031 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 22:34:28] 2026-02-03 21:33:54,031 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 22:34:28] 2026-02-03 21:33:54,032 | INFO     | did not find any defunct processes belonging to 2854187
[2026-02-03 22:34:28] 2026-02-03 21:33:54,034 | INFO     | did not find any defunct processes belonging to 2854187
[2026-02-03 22:34:28] 2026-02-03 21:33:54,034 | INFO     | ready for new job
[2026-02-03 22:34:28] 2026-02-03 21:33:54,034 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 22:34:28] 2026-02-03 21:33:54,034 | INFO     | **************************************
[2026-02-03 22:34:28] 2026-02-03 21:33:54,034 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 22:34:28] 2026-02-03 21:33:54,034 | INFO     | **************************************
[2026-02-03 22:34:28] 2026-02-03 21:33:54,034 | INFO     | 
[2026-02-03 22:34:28] 2026-02-03 21:33:54,035 | INFO     | architecture information:
[2026-02-03 22:34:28] 2026-02-03 21:33:54,035 | INFO     | executing command: cat /etc/os-release
[2026-02-03 22:34:28] 2026-02-03 21:33:54,045 | INFO     | cat /etc/os-release:
[2026-02-03 22:34:28] NAME="CentOS Linux"
[2026-02-03 22:34:28] VERSION="7 (Core)"
[2026-02-03 22:34:28] ID="centos"
[2026-02-03 22:34:28] ID_LIKE="rhel fedora"
[2026-02-03 22:34:28] VERSION_ID="7"
[2026-02-03 22:34:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 22:34:28] ANSI_COLOR="0;31"
[2026-02-03 22:34:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 22:34:28] HOME_URL="https://www.centos.org/"
[2026-02-03 22:34:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 22:34:28] 
[2026-02-03 22:34:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 22:34:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 22:34:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 22:34:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 22:34:28] 
[2026-02-03 22:34:28] 2026-02-03 21:33:54,045 | INFO     | **************************************
[2026-02-03 22:34:28] 2026-02-03 21:33:54,548 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-03 22:34:28] 2026-02-03 21:33:54,562 | INFO     | sufficient remaining disk space (319678316544 B)
[2026-02-03 22:34:28] 2026-02-03 21:33:54,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 22:34:28] 2026-02-03 21:33:54,562 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 22:34:28] 2026-02-03 21:33:54,562 | INFO     | update_server=False
[2026-02-03 22:34:28] 2026-02-03 21:33:54,562 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 22:34:28] 2026-02-03 21:33:54,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 22:34:28] 2026-02-03 21:33:54,562 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 22:34:28] 2026-02-03 21:33:54,625 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-03 22:34:28] 2026-02-03 21:33:54,625 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-03 22:34:28] 2026-02-03 21:33:54,626 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 22:34:28] 2026-02-03 21:33:54,626 | INFO     | will abort loop
[2026-02-03 22:34:28] 2026-02-03 21:33:54,717 | INFO     | all data control threads have been joined
[2026-02-03 22:34:28] 2026-02-03 21:33:55,038 | INFO     | all job control threads have been joined
[2026-02-03 22:34:28] 2026-02-03 21:33:55,459 | INFO     | all payload control threads have been joined
[2026-02-03 22:34:28] 2026-02-03 21:33:55,568 | INFO     | [job] retrieve thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:55,568 | INFO     | [job] queue monitor thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:55,575 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:55,631 | INFO     | [job] job monitor thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:55,680 | INFO     | [payload] validate_post thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:55,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 22:34:28] 2026-02-03 21:33:55,723 | INFO     | [data] control thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:56,043 | INFO     | [job] control thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:56,085 | INFO     | [payload] failed_post thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:56,148 | INFO     | [job] validate thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:56,196 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:56,262 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:56,370 | INFO     | [data] copytool_in thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:56,464 | INFO     | [payload] control thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:56,853 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:57,686 | INFO     | [data] copytool_out thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:33:58,569 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 22:34:28] 2026-02-03 21:34:22,109 | INFO     | [monitor] cgroup control has ended
[2026-02-03 22:34:28] 2026-02-03 21:34:22,873 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139880061282112)>', '<ExcThread(monitor, started 139879291807488)>']
[2026-02-03 22:34:28] 2026-02-03 21:34:24,602 | INFO     | PID=2849686 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 22:34:28] 2026-02-03 21:34:24,602 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 22:34:28] 2026-02-03 21:34:24,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 22:34:28] 2026-02-03 21:34:24,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 22:34:28] 2026-02-03 21:34:24,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 22:34:28] 2026-02-03 21:34:24,603 | INFO     | [monitor] control thread has ended
[2026-02-03 22:34:28] 2026-02-03 21:34:27,899 | INFO     | all workflow threads have been joined
[2026-02-03 22:34:28] 2026-02-03 21:34:27,899 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 22:34:28] 2026-02-03 21:34:27,899 | INFO     | traces error code: 0
[2026-02-03 22:34:28] 2026-02-03 21:34:27,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 22:34:28] 2026-02-03 21:34:27,954 [wrapper] ==== pilot stdout END ====
[2026-02-03 22:34:28] 2026-02-03 21:34:27,957 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 22:34:28] 2026-02-03 21:34:27,959 [wrapper] pilotpid: 2849686
[2026-02-03 22:34:28] 2026-02-03 21:34:27,962 [wrapper] Pilot exit status: 0
[2026-02-03 22:34:28] 2026-02-03 21:34:27,969 [wrapper] pandaids: 6993748111
[2026-02-03 22:34:28] 2026-02-03 21:34:27,987 [wrapper] cleanup supervisor_pilot 2859048 2849687
[2026-02-03 22:34:28] 2026-02-03 21:34:27,990 [wrapper] Test setup, not cleaning
[2026-02-03 22:34:28] 2026-02-03 21:34:27,992 [wrapper] apfmon messages muted
[2026-02-03 22:34:28] 2026-02-03 21:34:27,995 [wrapper] ==== wrapper stdout END ====
[2026-02-03 22:34:28] 2026-02-03 21:34:27,997 [wrapper] ==== wrapper stderr END ====
[2026-02-03 22:34:28]  *** Error codes and diagnostics ***
[2026-02-03 22:34:28]     "exeErrorCode": 0,
[2026-02-03 22:34:28]     "exeErrorDiag": "",
[2026-02-03 22:34:28]     "pilotErrorCode": 0,
[2026-02-03 22:34:28]     "pilotErrorDiag": "",
[2026-02-03 22:34:28]  *** Listing of results directory ***
[2026-02-03 22:34:28] total 681180
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc    584422 Feb  3 05:58 pilot3.tar.gz
[2026-02-03 22:34:28] -rwx------ 1 boinc boinc     36322 Feb  3 05:58 runpilot2-wrapper.sh
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc      5111 Feb  3 05:59 queuedata.json
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc       100 Feb  3 21:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 22:34:28] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 21:29 run_atlas
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc       105 Feb  3 21:29 job.xml
[2026-02-03 22:34:28] -rw-r--r-- 2 boinc boinc 502889308 Feb  3 21:29 EVNT.48318032._000158.pool.root.1
[2026-02-03 22:34:28] -rw-r--r-- 2 boinc boinc    597759 Feb  3 21:29 input.tar.gz
[2026-02-03 22:34:28] -rw-r--r-- 2 boinc boinc     15845 Feb  3 21:29 start_atlas.sh
[2026-02-03 22:34:28] drwxrwx--x 2 boinc boinc      4096 Feb  3 21:29 shared
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc         0 Feb  3 21:29 boinc_setup_complete
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc      6443 Feb  3 21:29 init_data.xml
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc         0 Feb  3 21:29 boinc_lockfile
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc      2535 Feb  3 21:30 pandaJob.out
[2026-02-03 22:34:28] -rw------- 1 boinc boinc   1009252 Feb  3 21:30 agis_schedconf.cvmfs.json
[2026-02-03 22:34:28] -rw------- 1 boinc boinc   1511668 Feb  3 21:30 agis_ddmendpoints.agis.ALL.json
[2026-02-03 22:34:28] -rw------- 1 boinc boinc       424 Feb  3 21:30 workernode_map.json
[2026-02-03 22:34:28] drwx------ 5 boinc boinc      4096 Feb  3 21:30 pilot3
[2026-02-03 22:34:28] -rw------- 1 boinc boinc 189086067 Feb  3 22:33 HITS.48318034._007434.pool.root.1
[2026-02-03 22:34:28] -rw------- 1 boinc boinc        95 Feb  3 22:33 pilot_heartbeat.json
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc       530 Feb  3 22:33 boinc_task_state.xml
[2026-02-03 22:34:28] -rw------- 1 boinc boinc      1016 Feb  3 22:33 memory_monitor_summary.json
[2026-02-03 22:34:28] -rw------- 1 boinc boinc    239170 Feb  3 22:33 log.48318034._007434.job.log.tgz.1
[2026-02-03 22:34:28] -rw------- 1 boinc boinc      6295 Feb  3 22:33 heartbeat.json
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc        27 Feb  3 22:34 wrapper_checkpoint.txt
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc      8192 Feb  3 22:34 boinc_mmap_file
[2026-02-03 22:34:28] -rw------- 1 boinc boinc      4934 Feb  3 22:34 pilotlog.txt
[2026-02-03 22:34:28] -rw------- 1 boinc boinc    572421 Feb  3 22:34 log.48318034._007434.job.log.1
[2026-02-03 22:34:28] -rw------- 1 boinc boinc       357 Feb  3 22:34 output.list
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc       620 Feb  3 22:34 runtime_log
[2026-02-03 22:34:28] -rw------- 1 boinc boinc    829440 Feb  3 22:34 result.tar.gz
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc      8901 Feb  3 22:34 runtime_log.err
[2026-02-03 22:34:28] -rw------- 1 boinc boinc       658 Feb  3 22:34 gZjLDmXfN78n9Rq4apOajLDm4fhM0noT9bVooX4SDmrqTKDm6pKcom.diag
[2026-02-03 22:34:28] -rw-r--r-- 1 boinc boinc     12057 Feb  3 22:34 stderr.txt
[2026-02-03 22:34:28] HITS file was successfully produced:
[2026-02-03 22:34:28] -rw------- 1 boinc boinc 189086067 Feb  3 22:33 shared/HITS.pool.root.1
[2026-02-03 22:34:28]  *** Contents of shared directory: ***
[2026-02-03 22:34:28] total 677180
[2026-02-03 22:34:28] -rw-r--r-- 2 boinc boinc 502889308 Feb  3 21:29 ATLAS.root_0
[2026-02-03 22:34:28] -rw-r--r-- 2 boinc boinc    597759 Feb  3 21:29 input.tar.gz
[2026-02-03 22:34:28] -rw-r--r-- 2 boinc boinc     15845 Feb  3 21:29 start_atlas.sh
[2026-02-03 22:34:28] -rw------- 1 boinc boinc 189086067 Feb  3 22:33 HITS.pool.root.1
[2026-02-03 22:34:28] -rw------- 1 boinc boinc    829440 Feb  3 22:34 result.tar.gz
22:34:29 (2845576): run_atlas exited; CPU time 14330.003183
22:34:29 (2845576): called boinc_finish(0)

</stderr_txt>
]]>

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