Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:01:04 (18003): wrapper (7.7.26015): starting
02:01:04 (18003): wrapper: running run_atlas (--nthreads 12)
[2026-02-03 02:01:04] Arguments: --nthreads 12
[2026-02-03 02:01:04] Threads: 12
[2026-02-03 02:01:04] Checking for CVMFS
[2026-02-03 02:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 02:01:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 02:01:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 02:01:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 02:01:04] 2.11.2.0 10903 105179 100504 155820 2 50 18983500 20275200 1 130560 0 40137287 99.865 7738993 33963 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-03 02:01:04] CVMFS is ok
[2026-02-03 02:01:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 02:01:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 02:01:04] Further information can be found at the LHC@home message board.
[2026-02-03 02:01:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 02:01:04] Checking for apptainer binary...
[2026-02-03 02:01:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 02:01:04] Running /usr/bin/apptainer --version
[2026-02-03 02:01:04] apptainer version 1.3.2-1.el7
[2026-02-03 02:01:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 02:01:06] c-205-22.aglt2.org
[2026-02-03 02:01:06] apptainer works
[2026-02-03 02:01:06] Set ATHENA_PROC_NUMBER=12
[2026-02-03 02:01:06] Set ATHENA_CORE_NUMBER=12
[2026-02-03 02:01:06] Starting ATLAS job with PandaID=6993667732
[2026-02-03 02:01:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 03:19:41]  *** The last 200 lines of the pilot log: ***
[2026-02-03 03:19:41]  is_altstaged=None
[2026-02-03 03:19:41]  is_tar=False
[2026-02-03 03:19:41]  lfn=log.48318018._001044.job.log.tgz.1
[2026-02-03 03:19:41]  mtime=0
[2026-02-03 03:19:41]  protocol_id=None
[2026-02-03 03:19:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-03 03:19:41]  replicas=None
[2026-02-03 03:19:41]  scope=mc23_13p6TeV
[2026-02-03 03:19:41]  status=None
[2026-02-03 03:19:41]  status_code=0
[2026-02-03 03:19:41]  storage_token=
[2026-02-03 03:19:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6993667732/log.48318018._001044.job.log.tgz.1
[2026-02-03 03:19:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/19/log.48318018._001044.job.log.tgz.1
[2026-02-03 03:19:41]  workdir=None
[2026-02-03 03:19:41] ]
[2026-02-03 03:19:41] 2026-02-03 08:18:34,570 | INFO     | transferring file log.48318018._001044.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6993667732/log.48318018._001044.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-03 03:19:41] 2026-02-03 08:18:34,570 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6993667732/log.48318018._001044.job.log.tgz.1 /tmp/boinchome/slots/0/log.48318018._001044.job
[2026-02-03 03:19:41] 2026-02-03 08:18:34,594 | INFO     | adding to output.list: log.48318018._001044.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/19/log.48318018._001044.job.log.tg
[2026-02-03 03:19:41] 2026-02-03 08:18:34,595 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-03 03:19:41] 2026-02-03 08:18:34,596 | INFO     | summary of transferred files:
[2026-02-03 03:19:41] 2026-02-03 08:18:34,596 | INFO     |  -- lfn=log.48318018._001044.job.log.tgz.1, status_code=0, status=transferred
[2026-02-03 03:19:41] 2026-02-03 08:18:34,596 | INFO     | stage-out finished correctly
[2026-02-03 03:19:41] 2026-02-03 08:18:34,642 | INFO     | time since job start (4627s) is within the limit (349056.0s)
[2026-02-03 03:19:41] 2026-02-03 08:18:36,549 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-03 03:19:41] 2026-02-03 08:18:36,653 | INFO     | time since job start (4629s) is within the limit (349056.0s)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,468 | INFO     | job 6993667732 has state=finished
[2026-02-03 03:19:41] 2026-02-03 08:18:38,468 | INFO     | preparing for final server update for job 6993667732 in state='finished'
[2026-02-03 03:19:41] 2026-02-03 08:18:38,469 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6993667732/jobReport.json
[2026-02-03 03:19:41] 2026-02-03 08:18:38,472 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-03 03:19:41] 2026-02-03 08:18:38,472 | INFO     | this job has now completed (state=finished)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,472 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,472 | INFO     | log transfer has been attempted: DONE
[2026-02-03 03:19:41] 2026-02-03 08:18:38,473 | INFO     | job 6993667732 has finished - writing final server update
[2026-02-03 03:19:41] 2026-02-03 08:18:38,473 | INFO     | total number of processed events: 400 (read)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,476 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6993667732/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,476 | INFO     | extracted standard info from prmon json
[2026-02-03 03:19:41] 2026-02-03 08:18:38,477 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 03:19:41] 2026-02-03 08:18:38,477 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 03:19:41] 2026-02-03 08:18:38,477 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 03:19:41] 2026-02-03 08:18:38,477 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 03:19:41] 2026-02-03 08:18:38,478 | INFO     | fitting pss+swap vs Time
[2026-02-03 03:19:41] 2026-02-03 08:18:38,479 | INFO     | sum of square deviations: 101843770.0
[2026-02-03 03:19:41] 2026-02-03 08:18:38,479 | INFO     | sum of deviations: 536845140.00000006
[2026-02-03 03:19:41] 2026-02-03 08:18:38,479 | INFO     | mean x: 1770104490.0
[2026-02-03 03:19:41] 2026-02-03 08:18:38,479 | INFO     | mean y: 2681454.4782608696
[2026-02-03 03:19:41] 2026-02-03 08:18:38,479 | INFO     | intersect: -9328002128.314077
[2026-02-03 03:19:41] 2026-02-03 08:18:38,479 | INFO     | chi2: 0.007081544723782262
[2026-02-03 03:19:41] 2026-02-03 08:18:38,480 | INFO     | current memory leak: 5.27 B/s (using 69 data points, chi2=0.01)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,480 | INFO     | could have reported an average CPU frequency of 1673 MHz (6 samples)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,480 | INFO     | ..............................
[2026-02-03 03:19:41] 2026-02-03 08:18:38,480 | INFO     | . Timing measurements:
[2026-02-03 03:19:41] 2026-02-03 08:18:38,480 | INFO     | . get job = 0 s
[2026-02-03 03:19:41] 2026-02-03 08:18:38,480 | INFO     | . initial setup = 7 s
[2026-02-03 03:19:41] 2026-02-03 08:18:38,480 | INFO     | . payload setup = 7 s
[2026-02-03 03:19:41] 2026-02-03 08:18:38,481 | INFO     | . stage-in = 0 s
[2026-02-03 03:19:41] 2026-02-03 08:18:38,481 | INFO     | . payload execution = 4605 s
[2026-02-03 03:19:41] 2026-02-03 08:18:38,481 | INFO     | . stage-out = 0 s
[2026-02-03 03:19:41] 2026-02-03 08:18:38,481 | INFO     | . log creation = 0 s
[2026-02-03 03:19:41] 2026-02-03 08:18:38,481 | INFO     | ..............................
[2026-02-03 03:19:41] 2026-02-03 08:18:38,647 | WARNING  | process 26367 can no longer be monitored (due to stat problems) - aborting
[2026-02-03 03:19:41] 2026-02-03 08:18:38,647 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6993667732/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,658 | INFO     | time since job start (4631s) is within the limit (349056.0s)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,773 | INFO     | number of running child processes to parent process 26367: 1
[2026-02-03 03:19:41] 2026-02-03 08:18:38,773 | INFO     | maximum number of monitored processes: 6
[2026-02-03 03:19:41] 2026-02-03 08:18:38,773 | INFO     | aborting job monitoring since job object (job id=6993667732) has expired
[2026-02-03 03:19:41] 2026-02-03 08:18:38,902 | INFO     | 
[2026-02-03 03:19:41] 2026-02-03 08:18:38,903 | INFO     | job summary report
[2026-02-03 03:19:41] 2026-02-03 08:18:38,903 | INFO     | --------------------------------------------------
[2026-02-03 03:19:41] 2026-02-03 08:18:38,903 | INFO     | PanDA job id: 6993667732
[2026-02-03 03:19:41] 2026-02-03 08:18:38,903 | INFO     | task id: 48318018
[2026-02-03 03:19:41] 2026-02-03 08:18:38,903 | INFO     | errors: (none)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,903 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 03:19:41] 2026-02-03 08:18:38,904 | INFO     | pilot state: finished 
[2026-02-03 03:19:41] 2026-02-03 08:18:38,904 | INFO     | transexitcode: 0
[2026-02-03 03:19:41] 2026-02-03 08:18:38,904 | INFO     | exeerrorcode: 0
[2026-02-03 03:19:41] 2026-02-03 08:18:38,904 | INFO     | exeerrordiag: 
[2026-02-03 03:19:41] 2026-02-03 08:18:38,904 | INFO     | exitcode: 0
[2026-02-03 03:19:41] 2026-02-03 08:18:38,904 | INFO     | exitmsg: OK
[2026-02-03 03:19:41] 2026-02-03 08:18:38,904 | INFO     | cpuconsumptiontime: 50415 s
[2026-02-03 03:19:41] 2026-02-03 08:18:38,905 | INFO     | nevents: 400
[2026-02-03 03:19:41] 2026-02-03 08:18:38,905 | INFO     | neventsw: 0
[2026-02-03 03:19:41] 2026-02-03 08:18:38,905 | INFO     | pid: 26367
[2026-02-03 03:19:41] 2026-02-03 08:18:38,905 | INFO     | pgrp: 26367
[2026-02-03 03:19:41] 2026-02-03 08:18:38,905 | INFO     | corecount: 12
[2026-02-03 03:19:41] 2026-02-03 08:18:38,905 | INFO     | event service: False
[2026-02-03 03:19:41] 2026-02-03 08:18:38,906 | INFO     | sizes: {0: 2277834, 1: 2278295, 11: 2278295, 4616: 2304373, 4617: 2313371, 4619: 2313427, 4621: 2313749}
[2026-02-03 03:19:41] 2026-02-03 08:18:38,906 | INFO     | --------------------------------------------------
[2026-02-03 03:19:41] 2026-02-03 08:18:38,906 | INFO     | 
[2026-02-03 03:19:41] 2026-02-03 08:18:38,906 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-03 03:19:41] 2026-02-03 08:18:38,933 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,933 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,933 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,933 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,933 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,934 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,934 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,934 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,934 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,934 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,934 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,935 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,935 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,935 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,935 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,935 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,935 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,936 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,936 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,936 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 03:19:41] 2026-02-03 08:18:38,936 | INFO     | job 6993667732 has completed (purged errors)
[2026-02-03 03:19:41] 2026-02-03 08:18:38,937 | INFO     | overall cleanup function is called
[2026-02-03 03:19:41] 2026-02-03 08:18:39,944 | INFO     | --- collectZombieJob: --- 10, [26367]
[2026-02-03 03:19:41] 2026-02-03 08:18:39,945 | INFO     | zombie collector waiting for pid 26367
[2026-02-03 03:19:41] 2026-02-03 08:18:39,945 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 03:19:41] 2026-02-03 08:18:39,945 | INFO     | collected zombie processes
[2026-02-03 03:19:41] 2026-02-03 08:18:39,945 | INFO     | will attempt to kill all subprocesses of pid=26367
[2026-02-03 03:19:41] 2026-02-03 08:18:40,035 | INFO     | process IDs to be killed: [26367] (in reverse order)
[2026-02-03 03:19:41] 2026-02-03 08:18:40,089 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 03:19:41] 2026-02-03 08:18:40,090 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 03:19:41] 2026-02-03 08:18:40,093 | INFO     | did not find any defunct processes belonging to 26367
[2026-02-03 03:19:41] 2026-02-03 08:18:40,096 | INFO     | did not find any defunct processes belonging to 26367
[2026-02-03 03:19:41] 2026-02-03 08:18:40,097 | INFO     | ready for new job
[2026-02-03 03:19:41] 2026-02-03 08:18:40,097 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 03:19:41] 2026-02-03 08:18:40,098 | INFO     | **************************************
[2026-02-03 03:19:41] 2026-02-03 08:18:40,098 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 03:19:41] 2026-02-03 08:18:40,098 | INFO     | **************************************
[2026-02-03 03:19:41] 2026-02-03 08:18:40,098 | INFO     | 
[2026-02-03 03:19:41] 2026-02-03 08:18:40,099 | INFO     | architecture information:
[2026-02-03 03:19:41] 2026-02-03 08:18:40,099 | INFO     | executing command: cat /etc/os-release
[2026-02-03 03:19:41] 2026-02-03 08:18:40,115 | INFO     | cat /etc/os-release:
[2026-02-03 03:19:41] NAME="CentOS Linux"
[2026-02-03 03:19:41] VERSION="7 (Core)"
[2026-02-03 03:19:41] ID="centos"
[2026-02-03 03:19:41] ID_LIKE="rhel fedora"
[2026-02-03 03:19:41] VERSION_ID="7"
[2026-02-03 03:19:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 03:19:41] ANSI_COLOR="0;31"
[2026-02-03 03:19:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 03:19:41] HOME_URL="https://www.centos.org/"
[2026-02-03 03:19:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 03:19:41] 
[2026-02-03 03:19:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 03:19:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 03:19:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 03:19:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 03:19:41] 
[2026-02-03 03:19:41] 2026-02-03 08:18:40,115 | INFO     | **************************************
[2026-02-03 03:19:41] 2026-02-03 08:18:40,618 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-03 03:19:41] 2026-02-03 08:18:40,634 | INFO     | sufficient remaining disk space (28790751232 B)
[2026-02-03 03:19:41] 2026-02-03 08:18:40,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 03:19:41] 2026-02-03 08:18:40,635 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 03:19:41] 2026-02-03 08:18:40,635 | INFO     | update_server=False
[2026-02-03 03:19:41] 2026-02-03 08:18:40,635 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 03:19:41] 2026-02-03 08:18:40,636 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-03 03:19:41] 2026-02-03 08:18:40,636 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 03:19:41] 2026-02-03 08:18:40,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 03:19:41] 2026-02-03 08:18:40,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 03:19:41] 2026-02-03 08:18:40,636 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 03:19:41] 2026-02-03 08:18:40,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 03:19:41] 2026-02-03 08:18:40,637 | INFO     | aborting loop
[2026-02-03 03:19:41] 2026-02-03 08:18:40,690 | INFO     | all payload control threads have been joined
[2026-02-03 03:19:41] 2026-02-03 08:18:41,150 | INFO     | all job control threads have been joined
[2026-02-03 03:19:41] 2026-02-03 08:18:41,235 | INFO     | all data control threads have been joined
[2026-02-03 03:19:41] 2026-02-03 08:18:41,641 | INFO     | [job] retrieve thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:41,643 | INFO     | [job] job monitor thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:41,659 | INFO     | [payload] failed_post thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:41,695 | INFO     | [payload] control thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:41,771 | INFO     | [data] copytool_in thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:41,780 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:42,152 | INFO     | [job] control thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:42,241 | INFO     | [data] control thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:42,284 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:42,634 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 03:19:41] 2026-02-03 08:18:42,642 | INFO     | [data] copytool_out thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:42,814 | INFO     | [job] validate thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:42,871 | INFO     | [payload] validate_post thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:43,138 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:43,569 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 03:19:41] 2026-02-03 08:18:44,572 | INFO     | [job] queue monitor thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:46,640 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:18:50,986 | INFO     | job.realtimelogging is not enabled
[2026-02-03 03:19:41] 2026-02-03 08:18:51,991 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 03:19:41] 2026-02-03 08:19:33,839 | INFO     | [monitor] cgroup control has ended
[2026-02-03 03:19:41] 2026-02-03 08:19:35,827 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140264483919680)>', '<ExcThread(monitor, started 140263221618432)>']
[2026-02-03 03:19:41] 2026-02-03 08:19:35,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 03:19:41] 2026-02-03 08:19:35,890 | INFO     | [monitor] control thread has ended
[2026-02-03 03:19:41] 2026-02-03 08:19:40,844 | INFO     | all workflow threads have been joined
[2026-02-03 03:19:41] 2026-02-03 08:19:40,844 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 03:19:41] 2026-02-03 08:19:40,844 | INFO     | traces error code: 0
[2026-02-03 03:19:41] 2026-02-03 08:19:40,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 03:19:41] 2026-02-03 08:19:40,943 [wrapper] ==== pilot stdout END ====
[2026-02-03 03:19:41] 2026-02-03 08:19:40,947 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 03:19:41] 2026-02-03 08:19:40,951 [wrapper] pilotpid: 21977
[2026-02-03 03:19:41] 2026-02-03 08:19:40,955 [wrapper] Pilot exit status: 0
[2026-02-03 03:19:41] 2026-02-03 08:19:40,971 [wrapper] pandaids: 6993667732
[2026-02-03 03:19:41] 2026-02-03 08:19:41,018 [wrapper] cleanup supervisor_pilot 15952 21978
[2026-02-03 03:19:41] 2026-02-03 08:19:41,022 [wrapper] Test setup, not cleaning
[2026-02-03 03:19:41] 2026-02-03 08:19:41,026 [wrapper] apfmon messages muted
[2026-02-03 03:19:41] 2026-02-03 08:19:41,030 [wrapper] ==== wrapper stdout END ====
[2026-02-03 03:19:41] 2026-02-03 08:19:41,034 [wrapper] ==== wrapper stderr END ====
[2026-02-03 03:19:41]  *** Error codes and diagnostics ***
[2026-02-03 03:19:41]     "exeErrorCode": 0,
[2026-02-03 03:19:41]     "exeErrorDiag": "",
[2026-02-03 03:19:41]     "pilotErrorCode": 0,
[2026-02-03 03:19:41]     "pilotErrorDiag": "",
[2026-02-03 03:19:41]  *** Listing of results directory ***
[2026-02-03 03:19:41] total 674652
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas    584422 Feb  2 19:37 pilot3.tar.gz
[2026-02-03 03:19:41] -rwx------ 1 boincer umatlas     36322 Feb  2 19:40 runpilot2-wrapper.sh
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas      5111 Feb  2 19:41 queuedata.json
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas       100 Feb  3 02:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 03:19:41] -rwxr-xr-x 1 boincer umatlas      7986 Feb  3 02:00 run_atlas
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas       105 Feb  3 02:00 job.xml
[2026-02-03 03:19:41] -rw-r--r-- 2 boincer umatlas 499243217 Feb  3 02:01 EVNT.48318016._000021.pool.root.1
[2026-02-03 03:19:41] -rw-r--r-- 2 boincer umatlas     15845 Feb  3 02:01 start_atlas.sh
[2026-02-03 03:19:41] drwxrwx--x 2 boincer umatlas      4096 Feb  3 02:01 shared
[2026-02-03 03:19:41] -rw-r--r-- 2 boincer umatlas    597754 Feb  3 02:01 input.tar.gz
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas         0 Feb  3 02:01 boinc_lockfile
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas      2519 Feb  3 02:01 pandaJob.out
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas        57 Feb  3 02:01 setup.sh.local
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas   1009324 Feb  3 02:01 agis_schedconf.cvmfs.json
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas   1511668 Feb  3 02:01 agis_ddmendpoints.agis.ALL.json
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas       445 Feb  3 02:01 workernode_map.json
[2026-02-03 03:19:41] drwx------ 5 boincer umatlas      4096 Feb  3 02:01 pilot3
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas      5953 Feb  3 03:13 init_data.xml
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas 185531088 Feb  3 03:18 HITS.48318018._001044.pool.root.1
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas       530 Feb  3 03:18 boinc_task_state.xml
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas        95 Feb  3 03:18 pilot_heartbeat.json
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas      1044 Feb  3 03:18 memory_monitor_summary.json
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas    389477 Feb  3 03:18 log.48318018._001044.job.log.tgz.1
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas      6412 Feb  3 03:18 heartbeat.json
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas      8192 Feb  3 03:19 boinc_mmap_file
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas        27 Feb  3 03:19 wrapper_checkpoint.txt
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas      4620 Feb  3 03:19 pilotlog.txt
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas    672616 Feb  3 03:19 log.48318018._001044.job.log.1
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas       357 Feb  3 03:19 output.list
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas       620 Feb  3 03:19 runtime_log
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas   1075200 Feb  3 03:19 result.tar.gz
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas      9343 Feb  3 03:19 runtime_log.err
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas       659 Feb  3 03:19 pUGNDmXeJ78n9Rq4apOajLDm4fhM0noT9bVooX4SDmKTTKDmOTrjSn.diag
[2026-02-03 03:19:41] -rw-r--r-- 1 boincer umatlas     21416 Feb  3 03:19 stderr.txt
[2026-02-03 03:19:41] HITS file was successfully produced:
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas 185531088 Feb  3 03:18 shared/HITS.pool.root.1
[2026-02-03 03:19:41]  *** Contents of shared directory: ***
[2026-02-03 03:19:41] total 670388
[2026-02-03 03:19:41] -rw-r--r-- 2 boincer umatlas 499243217 Feb  3 02:01 ATLAS.root_0
[2026-02-03 03:19:41] -rw-r--r-- 2 boincer umatlas     15845 Feb  3 02:01 start_atlas.sh
[2026-02-03 03:19:41] -rw-r--r-- 2 boincer umatlas    597754 Feb  3 02:01 input.tar.gz
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas 185531088 Feb  3 03:18 HITS.pool.root.1
[2026-02-03 03:19:41] -rw------- 1 boincer umatlas   1075200 Feb  3 03:19 result.tar.gz
03:19:42 (18003): run_atlas exited; CPU time 50395.908739
03:19:42 (18003): called boinc_finish(0)

</stderr_txt>
]]>

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