Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:29:29 (26282): wrapper (7.7.26015): starting
01:29:29 (26282): wrapper: running run_atlas (--nthreads 8)
[2026-02-03 01:29:29] Arguments: --nthreads 8
[2026-02-03 01:29:29] Threads: 8
[2026-02-03 01:29:29] Checking for CVMFS
[2026-02-03 01:29:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 01:29:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 01:29:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 01:29:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 01:29:29] 2.11.2.0 2797 164715 98632 155820 1 50 11281558 20275200 1 130560 0 43308770 99.822 11260740 32494 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-03 01:29:29] CVMFS is ok
[2026-02-03 01:29:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 01:29:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 01:29:29] Further information can be found at the LHC@home message board.
[2026-02-03 01:29:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 01:29:29] Checking for apptainer binary...
[2026-02-03 01:29:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 01:29:29] Running /usr/bin/apptainer --version
[2026-02-03 01:29:29] apptainer version 1.3.2-1.el7
[2026-02-03 01:29:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 01:29:31] c-204-11.aglt2.org
[2026-02-03 01:29:31] apptainer works
[2026-02-03 01:29:31] Set ATHENA_PROC_NUMBER=8
[2026-02-03 01:29:31] Set ATHENA_CORE_NUMBER=8
[2026-02-03 01:29:31] Starting ATLAS job with PandaID=6983344772
[2026-02-03 01:29:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:49:35 (340): wrapper (7.7.26015): starting
02:49:35 (340): wrapper: running run_atlas (--nthreads 8)
[2026-02-03 02:49:35] Arguments: --nthreads 8
[2026-02-03 02:49:35] Threads: 8
[2026-02-03 02:49:35] This job has been restarted, cleaning up previous attempt
[2026-02-03 02:49:35] Checking for CVMFS
[2026-02-03 02:49:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 02:49:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 02:49:36] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 02:49:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 02:49:36] 2.11.2.0 2797 164795 99040 155822 1 32 11416919 20275200 1 130560 0 43360060 99.822 11266299 32496 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-03 02:49:36] CVMFS is ok
[2026-02-03 02:49:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 02:49:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 02:49:36] Further information can be found at the LHC@home message board.
[2026-02-03 02:49:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 02:49:36] Checking for apptainer binary...
[2026-02-03 02:49:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 02:49:36] Running /usr/bin/apptainer --version
[2026-02-03 02:49:36] apptainer version 1.3.2-1.el7
[2026-02-03 02:49:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 02:49:38] c-204-11.aglt2.org
[2026-02-03 02:49:38] apptainer works
[2026-02-03 02:49:38] Set ATHENA_PROC_NUMBER=8
[2026-02-03 02:49:38] Set ATHENA_CORE_NUMBER=8
[2026-02-03 02:49:38] Starting ATLAS job with PandaID=6983344772
[2026-02-03 02:49:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 05:02:14]  *** The last 200 lines of the pilot log: ***
[2026-02-03 05:02:14] 2026-02-03 10:01:15,642 | INFO     | time since job start (7879s) is within the limit (349056.0s)
[2026-02-03 05:02:14] 2026-02-03 10:01:16,759 | INFO     | PID=4521 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-03 05:02:14] 2026-02-03 10:01:17,132 | INFO     | job 6983344772 has state=finished
[2026-02-03 05:02:14] 2026-02-03 10:01:17,132 | INFO     | preparing for final server update for job 6983344772 in state='finished'
[2026-02-03 05:02:14] 2026-02-03 10:01:17,133 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6983344772/jobReport.json
[2026-02-03 05:02:14] 2026-02-03 10:01:17,137 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-03 05:02:14] 2026-02-03 10:01:17,138 | INFO     | this job has now completed (state=finished)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,138 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,138 | INFO     | log transfer has been attempted: DONE
[2026-02-03 05:02:14] 2026-02-03 10:01:17,138 | INFO     | job 6983344772 has finished - writing final server update
[2026-02-03 05:02:14] 2026-02-03 10:01:17,139 | INFO     | total number of processed events: 400 (read)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,141 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6983344772/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,142 | INFO     | extracted standard info from prmon json
[2026-02-03 05:02:14] 2026-02-03 10:01:17,142 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 05:02:14] 2026-02-03 10:01:17,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 05:02:14] 2026-02-03 10:01:17,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 05:02:14] 2026-02-03 10:01:17,143 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 05:02:14] 2026-02-03 10:01:17,145 | INFO     | fitting pss+swap vs Time
[2026-02-03 05:02:14] 2026-02-03 10:01:17,145 | INFO     | sum of square deviations: 665612480.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,146 | INFO     | sum of deviations: 7393816710.000006
[2026-02-03 05:02:14] 2026-02-03 10:01:17,146 | INFO     | mean x: 1770108926.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,146 | INFO     | mean y: 2500127.976744186
[2026-02-03 05:02:14] 2026-02-03 10:01:17,146 | INFO     | intersect: -19660383830.53762
[2026-02-03 05:02:14] 2026-02-03 10:01:17,146 | INFO     | chi2: 1.534478632910353
[2026-02-03 05:02:14] 2026-02-03 10:01:17,147 | INFO     | sum of square deviations: 591173875.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,147 | INFO     | sum of deviations: 7209201338.499999
[2026-02-03 05:02:14] 2026-02-03 10:01:17,147 | INFO     | mean x: 1770108773.5
[2026-02-03 05:02:14] 2026-02-03 10:01:17,148 | INFO     | mean y: 2499749.4274193547
[2026-02-03 05:02:14] 2026-02-03 10:01:17,148 | INFO     | intersect: -21583485489.190903
[2026-02-03 05:02:14] 2026-02-03 10:01:17,148 | INFO     | chi2: 1.5366082846832485
[2026-02-03 05:02:14] 2026-02-03 10:01:17,148 | INFO     | current chi2=1.5366082846832485 (change=-0.13878666846317034 %)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,148 | INFO     | right removable region: 123
[2026-02-03 05:02:14] 2026-02-03 10:01:17,148 | INFO     | sum of square deviations: 591173875.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,149 | INFO     | sum of deviations: -11204408630.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,149 | INFO     | mean x: 1770109078.5
[2026-02-03 05:02:14] 2026-02-03 10:01:17,149 | INFO     | mean y: 2537523.2580645164
[2026-02-03 05:02:14] 2026-02-03 10:01:17,149 | INFO     | intersect: 33551086053.39524
[2026-02-03 05:02:14] 2026-02-03 10:01:17,150 | INFO     | chi2: 0.12086483126935367
[2026-02-03 05:02:14] 2026-02-03 10:01:17,150 | INFO     | current chi2=0.12086483126935367 (change=92.12339431275647 %)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,150 | INFO     | sum of square deviations: 522502820.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,151 | INFO     | sum of deviations: -11289439580.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,151 | INFO     | mean x: 1770109231.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,151 | INFO     | mean y: 2537593.31092437
[2026-02-03 05:02:14] 2026-02-03 10:01:17,151 | INFO     | intersect: 38248343067.38427
[2026-02-03 05:02:14] 2026-02-03 10:01:17,151 | INFO     | chi2: 0.10114576205101378
[2026-02-03 05:02:14] 2026-02-03 10:01:17,151 | INFO     | current chi2=0.10114576205101378 (change=16.314976830931823 %)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,152 | INFO     | left removable region: 20
[2026-02-03 05:02:14] 2026-02-03 10:01:17,152 | INFO     | sum of square deviations: 338804492.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,152 | INFO     | sum of deviations: -3002788684.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,152 | INFO     | mean x: 1770109353.0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,152 | INFO     | mean y: 2517395.0291262134
[2026-02-03 05:02:14] 2026-02-03 10:01:17,153 | INFO     | intersect: 15690810968.86687
[2026-02-03 05:02:14] 2026-02-03 10:01:17,153 | INFO     | chi2: 0.052762528373655894
[2026-02-03 05:02:14] 2026-02-03 10:01:17,153 | INFO     | current memory leak: -8.86 B/s (using 103 data points, chi2=0.05)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,153 | INFO     | could have reported an average CPU frequency of 1645 MHz (8 samples)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,153 | INFO     | ..............................
[2026-02-03 05:02:14] 2026-02-03 10:01:17,154 | INFO     | . Timing measurements:
[2026-02-03 05:02:14] 2026-02-03 10:01:17,154 | INFO     | . get job = 0 s
[2026-02-03 05:02:14] 2026-02-03 10:01:17,154 | INFO     | . initial setup = 1 s
[2026-02-03 05:02:14] 2026-02-03 10:01:17,154 | INFO     | . payload setup = 8 s
[2026-02-03 05:02:14] 2026-02-03 10:01:17,154 | INFO     | . stage-in = 0 s
[2026-02-03 05:02:14] 2026-02-03 10:01:17,154 | INFO     | . payload execution = 7852 s
[2026-02-03 05:02:14] 2026-02-03 10:01:17,154 | INFO     | . stage-out = 2 s
[2026-02-03 05:02:14] 2026-02-03 10:01:17,154 | INFO     | . log creation = 0 s
[2026-02-03 05:02:14] 2026-02-03 10:01:17,155 | INFO     | ..............................
[2026-02-03 05:02:14] 2026-02-03 10:01:17,238 | INFO     | 
[2026-02-03 05:02:14] 2026-02-03 10:01:17,239 | INFO     | job summary report
[2026-02-03 05:02:14] 2026-02-03 10:01:17,239 | INFO     | --------------------------------------------------
[2026-02-03 05:02:14] 2026-02-03 10:01:17,239 | INFO     | PanDA job id: 6983344772
[2026-02-03 05:02:14] 2026-02-03 10:01:17,239 | INFO     | task id: 48317872
[2026-02-03 05:02:14] 2026-02-03 10:01:17,239 | INFO     | errors: (none)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,240 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 05:02:14] 2026-02-03 10:01:17,240 | INFO     | pilot state: finished 
[2026-02-03 05:02:14] 2026-02-03 10:01:17,240 | INFO     | transexitcode: 0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,240 | INFO     | exeerrorcode: 0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,240 | INFO     | exeerrordiag: 
[2026-02-03 05:02:14] 2026-02-03 10:01:17,240 | INFO     | exitcode: 0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,241 | INFO     | exitmsg: OK
[2026-02-03 05:02:14] 2026-02-03 10:01:17,241 | INFO     | cpuconsumptiontime: 58325 s
[2026-02-03 05:02:14] 2026-02-03 10:01:17,241 | INFO     | nevents: 400
[2026-02-03 05:02:14] 2026-02-03 10:01:17,241 | INFO     | neventsw: 0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,241 | INFO     | pid: 8191
[2026-02-03 05:02:14] 2026-02-03 10:01:17,241 | INFO     | pgrp: 8191
[2026-02-03 05:02:14] 2026-02-03 10:01:17,242 | INFO     | corecount: 8
[2026-02-03 05:02:14] 2026-02-03 10:01:17,242 | INFO     | event service: False
[2026-02-03 05:02:14] 2026-02-03 10:01:17,242 | INFO     | sizes: {0: 2278201, 1: 2278261, 11: 2278289, 7864: 2305938, 7865: 2305937, 7867: 2315175, 7869: 2315313}
[2026-02-03 05:02:14] 2026-02-03 10:01:17,242 | INFO     | --------------------------------------------------
[2026-02-03 05:02:14] 2026-02-03 10:01:17,242 | INFO     | 
[2026-02-03 05:02:14] 2026-02-03 10:01:17,242 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-03 05:02:14] 2026-02-03 10:01:17,270 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,270 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,270 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,270 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,271 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,271 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,271 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,271 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,271 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,273 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,273 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,273 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,273 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,273 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 05:02:14] 2026-02-03 10:01:17,274 | INFO     | job 6983344772 has completed (purged errors)
[2026-02-03 05:02:14] 2026-02-03 10:01:17,274 | INFO     | overall cleanup function is called
[2026-02-03 05:02:14] 2026-02-03 10:01:18,292 | INFO     | --- collectZombieJob: --- 10, [8191]
[2026-02-03 05:02:14] 2026-02-03 10:01:18,292 | INFO     | zombie collector waiting for pid 8191
[2026-02-03 05:02:14] 2026-02-03 10:01:18,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 05:02:14] 2026-02-03 10:01:18,293 | INFO     | collected zombie processes
[2026-02-03 05:02:14] 2026-02-03 10:01:18,293 | INFO     | will attempt to kill all subprocesses of pid=8191
[2026-02-03 05:02:14] 2026-02-03 10:01:18,384 | INFO     | process IDs to be killed: [8191] (in reverse order)
[2026-02-03 05:02:14] 2026-02-03 10:01:18,446 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 05:02:14] 2026-02-03 10:01:18,446 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 05:02:14] 2026-02-03 10:01:18,451 | INFO     | did not find any defunct processes belonging to 8191
[2026-02-03 05:02:14] 2026-02-03 10:01:18,454 | INFO     | did not find any defunct processes belonging to 8191
[2026-02-03 05:02:14] 2026-02-03 10:01:18,454 | INFO     | ready for new job
[2026-02-03 05:02:14] 2026-02-03 10:01:18,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 05:02:14] 2026-02-03 10:01:18,456 | INFO     | **************************************
[2026-02-03 05:02:14] 2026-02-03 10:01:18,456 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 05:02:14] 2026-02-03 10:01:18,456 | INFO     | **************************************
[2026-02-03 05:02:14] 2026-02-03 10:01:18,456 | INFO     | 
[2026-02-03 05:02:14] 2026-02-03 10:01:18,457 | INFO     | architecture information:
[2026-02-03 05:02:14] 2026-02-03 10:01:18,458 | INFO     | executing command: cat /etc/os-release
[2026-02-03 05:02:14] 2026-02-03 10:01:18,475 | INFO     | cat /etc/os-release:
[2026-02-03 05:02:14] NAME="CentOS Linux"
[2026-02-03 05:02:14] VERSION="7 (Core)"
[2026-02-03 05:02:14] ID="centos"
[2026-02-03 05:02:14] ID_LIKE="rhel fedora"
[2026-02-03 05:02:14] VERSION_ID="7"
[2026-02-03 05:02:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 05:02:14] ANSI_COLOR="0;31"
[2026-02-03 05:02:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 05:02:14] HOME_URL="https://www.centos.org/"
[2026-02-03 05:02:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 05:02:14] 
[2026-02-03 05:02:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 05:02:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 05:02:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 05:02:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 05:02:14] 
[2026-02-03 05:02:14] 2026-02-03 10:01:18,476 | INFO     | **************************************
[2026-02-03 05:02:14] 2026-02-03 10:01:18,979 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-03 05:02:14] 2026-02-03 10:01:18,999 | INFO     | sufficient remaining disk space (18015584256 B)
[2026-02-03 05:02:14] 2026-02-03 10:01:18,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 05:02:14] 2026-02-03 10:01:18,999 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 05:02:14] 2026-02-03 10:01:19,000 | INFO     | update_server=False
[2026-02-03 05:02:14] 2026-02-03 10:01:19,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 05:02:14] 2026-02-03 10:01:19,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 05:02:14] 2026-02-03 10:01:19,001 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 05:02:14] 2026-02-03 10:01:19,001 | INFO     | aborting loop
[2026-02-03 05:02:14] 2026-02-03 10:01:19,508 | INFO     | all data control threads have been joined
[2026-02-03 05:02:14] 2026-02-03 10:01:19,768 | INFO     | all payload control threads have been joined
[2026-02-03 05:02:14] 2026-02-03 10:01:20,006 | INFO     | [job] retrieve thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:20,006 | INFO     | [job] queue monitor thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:20,007 | INFO     | [job] job monitor thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:20,241 | INFO     | [data] copytool_in thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:20,289 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 05:02:14] 2026-02-03 10:01:20,345 | INFO     | all job control threads have been joined
[2026-02-03 05:02:14] 2026-02-03 10:01:20,380 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:20,412 | INFO     | [payload] failed_post thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:20,514 | INFO     | [data] control thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:20,774 | INFO     | [payload] control thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:20,799 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:20,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 05:02:14] 2026-02-03 10:01:21,166 | INFO     | [job] validate thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:21,174 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:21,351 | INFO     | [job] control thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:21,566 | INFO     | [payload] validate_post thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:22,292 | INFO     | [data] copytool_out thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:24,880 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:29,467 | INFO     | job.realtimelogging is not enabled
[2026-02-03 05:02:14] 2026-02-03 10:01:30,472 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 05:02:14] 2026-02-03 10:01:48,964 | INFO     | PID=4521 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-03 05:02:14] 2026-02-03 10:01:48,964 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 05:02:14] 2026-02-03 10:01:48,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 05:02:14] 2026-02-03 10:01:48,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 05:02:14] 2026-02-03 10:02:08,513 | INFO     | [monitor] cgroup control has ended
[2026-02-03 05:02:14] 2026-02-03 10:02:09,019 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140297899128640)>', '<ExcThread(monitor, started 140296574723840)>']
[2026-02-03 05:02:14] 2026-02-03 10:02:09,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 05:02:14] 2026-02-03 10:02:09,063 | INFO     | [monitor] control thread has ended
[2026-02-03 05:02:14] 2026-02-03 10:02:14,044 | INFO     | all workflow threads have been joined
[2026-02-03 05:02:14] 2026-02-03 10:02:14,051 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 05:02:14] 2026-02-03 10:02:14,052 | INFO     | traces error code: 0
[2026-02-03 05:02:14] 2026-02-03 10:02:14,052 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 05:02:14] 2026-02-03 10:02:14,175 [wrapper] ==== pilot stdout END ====
[2026-02-03 05:02:14] 2026-02-03 10:02:14,179 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 05:02:14] 2026-02-03 10:02:14,183 [wrapper] pilotpid: 4521
[2026-02-03 05:02:14] 2026-02-03 10:02:14,187 [wrapper] Pilot exit status: 0
[2026-02-03 05:02:14] 2026-02-03 10:02:14,204 [wrapper] pandaids: 6983344772 6983344772
[2026-02-03 05:02:14] 2026-02-03 10:02:14,258 [wrapper] cleanup supervisor_pilot 18843 4522
[2026-02-03 05:02:14] 2026-02-03 10:02:14,262 [wrapper] Test setup, not cleaning
[2026-02-03 05:02:14] 2026-02-03 10:02:14,267 [wrapper] apfmon messages muted
[2026-02-03 05:02:14] 2026-02-03 10:02:14,271 [wrapper] ==== wrapper stdout END ====
[2026-02-03 05:02:14] 2026-02-03 10:02:14,275 [wrapper] ==== wrapper stderr END ====
[2026-02-03 05:02:14]  *** Error codes and diagnostics ***
[2026-02-03 05:02:14]     "exeErrorCode": 0,
[2026-02-03 05:02:14]     "exeErrorDiag": "",
[2026-02-03 05:02:14]     "pilotErrorCode": 0,
[2026-02-03 05:02:14]     "pilotErrorDiag": "",
[2026-02-03 05:02:14]  *** Listing of results directory ***
[2026-02-03 05:02:14] total 1163468
[2026-02-03 05:02:14] drwx------ 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas    584422 Jan 25 15:48 pilot3.tar.gz
[2026-02-03 05:02:14] -rwx------ 1 boincer umatlas     36322 Jan 25 15:51 runpilot2-wrapper.sh
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas      5111 Jan 25 15:54 queuedata.json
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas       100 Feb  3 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 05:02:14] -rwxr-xr-x 1 boincer umatlas      7986 Feb  3 01:29 run_atlas
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas       105 Feb  3 01:29 job.xml
[2026-02-03 05:02:14] -rw-r--r-- 3 boincer umatlas 499132489 Feb  3 01:29 EVNT.48317869._000021.pool.root.1
[2026-02-03 05:02:14] -rw-r--r-- 3 boincer umatlas 499132489 Feb  3 01:29 ATLAS.root_0
[2026-02-03 05:02:14] drwxrwx--x 2 boincer umatlas      4096 Feb  3 01:29 shared
[2026-02-03 05:02:14] -rw-r--r-- 2 boincer umatlas    597752 Feb  3 01:29 input.tar.gz
[2026-02-03 05:02:14] -rw-r--r-- 2 boincer umatlas     15845 Feb  3 01:29 start_atlas.sh
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas         0 Feb  3 01:29 boinc_lockfile
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas      2513 Feb  3 02:49 pandaJob.out
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas        57 Feb  3 02:49 setup.sh.local
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas   1009324 Feb  3 02:49 agis_schedconf.cvmfs.json
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas       433 Feb  3 02:49 workernode_map.json
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas      5909 Feb  3 05:00 init_data.xml
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas 186219620 Feb  3 05:00 HITS.48317872._001020.pool.root.1
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas        96 Feb  3 05:00 pilot_heartbeat.json
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas       531 Feb  3 05:00 boinc_task_state.xml
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas      1049 Feb  3 05:01 memory_monitor_summary.json
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas   1511668 Feb  3 05:01 agis_ddmendpoints.agis.ALL.json
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas    371023 Feb  3 05:01 log.48317872._001020.job.log.tgz.1
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas      6397 Feb  3 05:01 heartbeat.json
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas      8192 Feb  3 05:02 boinc_mmap_file
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas        28 Feb  3 05:02 wrapper_checkpoint.txt
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas      4813 Feb  3 05:02 pilotlog.txt
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas   1108428 Feb  3 05:02 log.48317872._001020.job.log.1
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas       357 Feb  3 05:02 output.list
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas       620 Feb  3 05:02 runtime_log
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas   1495040 Feb  3 05:02 result.tar.gz
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas      9426 Feb  3 05:02 runtime_log.err
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas       783 Feb  3 05:02 RsgMDmbGM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRq1KDmcEoFJm.diag
[2026-02-03 05:02:14] -rw-r--r-- 1 boincer umatlas     23460 Feb  3 05:02 stderr.txt
[2026-02-03 05:02:14] HITS file was successfully produced:
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas 186219620 Feb  3 05:00 shared/HITS.pool.root.1
[2026-02-03 05:02:14]  *** Contents of shared directory: ***
[2026-02-03 05:02:14] total 671360
[2026-02-03 05:02:14] -rw-r--r-- 3 boincer umatlas 499132489 Feb  3 01:29 ATLAS.root_0
[2026-02-03 05:02:14] -rw-r--r-- 2 boincer umatlas    597752 Feb  3 01:29 input.tar.gz
[2026-02-03 05:02:14] -rw-r--r-- 2 boincer umatlas     15845 Feb  3 01:29 start_atlas.sh
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas 186219620 Feb  3 05:00 HITS.pool.root.1
[2026-02-03 05:02:14] -rw------- 1 boincer umatlas   1495040 Feb  3 05:02 result.tar.gz
05:02:16 (340): run_atlas exited; CPU time 58273.877244
05:02:16 (340): called boinc_finish(0)

</stderr_txt>
]]>

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