Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:26:56 (15816): wrapper (7.7.26015): starting
00:26:56 (15816): wrapper: running run_atlas (--nthreads 12)
[2026-02-03 00:26:56] Arguments: --nthreads 12
[2026-02-03 00:26:56] Threads: 12
[2026-02-03 00:26:56] Checking for CVMFS
[2026-02-03 00:26:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 00:26:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 00:26:56] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 00:26:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 00:26:56] 2.11.2.0 2991 386574 98004 155819 2 49 17871662 20275200 1 130560 1 167021427 99.946 24053797 17048 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-03 00:26:56] CVMFS is ok
[2026-02-03 00:26:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 00:26:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 00:26:56] Further information can be found at the LHC@home message board.
[2026-02-03 00:26:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 00:26:56] Checking for apptainer binary...
[2026-02-03 00:26:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 00:26:56] Running /usr/bin/apptainer --version
[2026-02-03 00:26:56] apptainer version 1.3.2-1.el7
[2026-02-03 00:26:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 00:26:57] c-205-32.aglt2.org
[2026-02-03 00:26:57] apptainer works
[2026-02-03 00:26:57] Set ATHENA_PROC_NUMBER=12
[2026-02-03 00:26:57] Set ATHENA_CORE_NUMBER=12
[2026-02-03 00:26:58] Starting ATLAS job with PandaID=6997548251
[2026-02-03 00:26:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 02:04:40]  *** The last 200 lines of the pilot log: ***
[2026-02-03 02:04:40]  filetype=log
[2026-02-03 02:04:40]  guid=e7e36f0d-6897-4d92-97f7-f657af02665e
[2026-02-03 02:04:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-03 02:04:40]  is_altstaged=None
[2026-02-03 02:04:40]  is_tar=False
[2026-02-03 02:04:40]  lfn=log.48431080._008716.job.log.tgz.1
[2026-02-03 02:04:40]  mtime=0
[2026-02-03 02:04:40]  protocol_id=None
[2026-02-03 02:04:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-03 02:04:40]  replicas=None
[2026-02-03 02:04:40]  scope=mc23_13p6TeV
[2026-02-03 02:04:40]  status=None
[2026-02-03 02:04:40]  status_code=0
[2026-02-03 02:04:40]  storage_token=
[2026-02-03 02:04:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6997548251/log.48431080._008716.job.log.tgz.1
[2026-02-03 02:04:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/a0/log.48431080._008716.job.log.tgz.1
[2026-02-03 02:04:40]  workdir=None
[2026-02-03 02:04:40] ]
[2026-02-03 02:04:40] 2026-02-03 07:04:04,881 | INFO     | transferring file log.48431080._008716.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6997548251/log.48431080._008716.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-03 02:04:40] 2026-02-03 07:04:04,881 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6997548251/log.48431080._008716.job.log.tgz.1 /tmp/boinchome/slots/0/log.48431080._008716.job
[2026-02-03 02:04:40] 2026-02-03 07:04:04,902 | INFO     | adding to output.list: log.48431080._008716.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/a0/log.48431080._008716.job.log.tg
[2026-02-03 02:04:40] 2026-02-03 07:04:04,903 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-03 02:04:40] 2026-02-03 07:04:04,903 | INFO     | summary of transferred files:
[2026-02-03 02:04:40] 2026-02-03 07:04:04,903 | INFO     |  -- lfn=log.48431080._008716.job.log.tgz.1, status_code=0, status=transferred
[2026-02-03 02:04:40] 2026-02-03 07:04:04,903 | INFO     | stage-out finished correctly
[2026-02-03 02:04:40] 2026-02-03 07:04:05,351 | INFO     | time since job start (5808s) is within the limit (349056.0s)
[2026-02-03 02:04:40] 2026-02-03 07:04:05,907 | WARNING  | process 23927 can no longer be monitored (due to stat problems) - aborting
[2026-02-03 02:04:40] 2026-02-03 07:04:05,907 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6997548251/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 02:04:40] 2026-02-03 07:04:05,991 | INFO     | number of running child processes to parent process 23927: 1
[2026-02-03 02:04:40] 2026-02-03 07:04:05,991 | INFO     | maximum number of monitored processes: 6
[2026-02-03 02:04:40] 2026-02-03 07:04:07,357 | INFO     | time since job start (5810s) is within the limit (349056.0s)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,273 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-03 02:04:40] 2026-02-03 07:04:08,353 | INFO     | job 6997548251 has state=finished
[2026-02-03 02:04:40] 2026-02-03 07:04:08,354 | INFO     | preparing for final server update for job 6997548251 in state='finished'
[2026-02-03 02:04:40] 2026-02-03 07:04:08,354 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6997548251/jobReport.json
[2026-02-03 02:04:40] 2026-02-03 07:04:08,357 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-03 02:04:40] 2026-02-03 07:04:08,358 | INFO     | this job has now completed (state=finished)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,358 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,358 | INFO     | log transfer has been attempted: DONE
[2026-02-03 02:04:40] 2026-02-03 07:04:08,358 | INFO     | job 6997548251 has finished - writing final server update
[2026-02-03 02:04:40] 2026-02-03 07:04:08,358 | INFO     | total number of processed events: 400 (read)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,360 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6997548251/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,361 | INFO     | extracted standard info from prmon json
[2026-02-03 02:04:40] 2026-02-03 07:04:08,361 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 02:04:40] 2026-02-03 07:04:08,361 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 02:04:40] 2026-02-03 07:04:08,361 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 02:04:40] 2026-02-03 07:04:08,361 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 02:04:40] 2026-02-03 07:04:08,363 | INFO     | fitting pss+swap vs Time
[2026-02-03 02:04:40] 2026-02-03 07:04:08,363 | INFO     | sum of square deviations: 211285822.0
[2026-02-03 02:04:40] 2026-02-03 07:04:08,364 | INFO     | sum of deviations: -13053166679.0
[2026-02-03 02:04:40] 2026-02-03 07:04:08,364 | INFO     | mean x: 1770099418.5
[2026-02-03 02:04:40] 2026-02-03 07:04:08,364 | INFO     | mean y: 2860054.840909091
[2026-02-03 02:04:40] 2026-02-03 07:04:08,364 | INFO     | intersect: 109359003923.6968
[2026-02-03 02:04:40] 2026-02-03 07:04:08,364 | INFO     | chi2: 0.11362198032334682
[2026-02-03 02:04:40] 2026-02-03 07:04:08,364 | INFO     | current memory leak: -61.78 B/s (using 88 data points, chi2=0.11)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,365 | INFO     | could have reported an average CPU frequency of 1729 MHz (7 samples)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,365 | INFO     | ..............................
[2026-02-03 02:04:40] 2026-02-03 07:04:08,365 | INFO     | . Timing measurements:
[2026-02-03 02:04:40] 2026-02-03 07:04:08,365 | INFO     | . get job = 0 s
[2026-02-03 02:04:40] 2026-02-03 07:04:08,365 | INFO     | . initial setup = 7 s
[2026-02-03 02:04:40] 2026-02-03 07:04:08,365 | INFO     | . payload setup = 6 s
[2026-02-03 02:04:40] 2026-02-03 07:04:08,365 | INFO     | . stage-in = 0 s
[2026-02-03 02:04:40] 2026-02-03 07:04:08,365 | INFO     | . payload execution = 5783 s
[2026-02-03 02:04:40] 2026-02-03 07:04:08,366 | INFO     | . stage-out = 0 s
[2026-02-03 02:04:40] 2026-02-03 07:04:08,366 | INFO     | . log creation = 0 s
[2026-02-03 02:04:40] 2026-02-03 07:04:08,366 | INFO     | ..............................
[2026-02-03 02:04:40] 2026-02-03 07:04:08,704 | INFO     | 
[2026-02-03 02:04:40] 2026-02-03 07:04:08,704 | INFO     | job summary report
[2026-02-03 02:04:40] 2026-02-03 07:04:08,705 | INFO     | --------------------------------------------------
[2026-02-03 02:04:40] 2026-02-03 07:04:08,705 | INFO     | PanDA job id: 6997548251
[2026-02-03 02:04:40] 2026-02-03 07:04:08,705 | INFO     | task id: 48431080
[2026-02-03 02:04:40] 2026-02-03 07:04:08,705 | INFO     | errors: (none)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,705 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 02:04:40] 2026-02-03 07:04:08,705 | INFO     | pilot state: finished 
[2026-02-03 02:04:40] 2026-02-03 07:04:08,706 | INFO     | transexitcode: 0
[2026-02-03 02:04:40] 2026-02-03 07:04:08,706 | INFO     | exeerrorcode: 0
[2026-02-03 02:04:40] 2026-02-03 07:04:08,706 | INFO     | exeerrordiag: 
[2026-02-03 02:04:40] 2026-02-03 07:04:08,706 | INFO     | exitcode: 0
[2026-02-03 02:04:40] 2026-02-03 07:04:08,706 | INFO     | exitmsg: OK
[2026-02-03 02:04:40] 2026-02-03 07:04:08,706 | INFO     | cpuconsumptiontime: 63492 s
[2026-02-03 02:04:40] 2026-02-03 07:04:08,707 | INFO     | nevents: 400
[2026-02-03 02:04:40] 2026-02-03 07:04:08,707 | INFO     | neventsw: 0
[2026-02-03 02:04:40] 2026-02-03 07:04:08,707 | INFO     | pid: 23927
[2026-02-03 02:04:40] 2026-02-03 07:04:08,707 | INFO     | pgrp: 23927
[2026-02-03 02:04:40] 2026-02-03 07:04:08,707 | INFO     | corecount: 12
[2026-02-03 02:04:40] 2026-02-03 07:04:08,707 | INFO     | event service: False
[2026-02-03 02:04:40] 2026-02-03 07:04:08,708 | INFO     | sizes: {0: 2277825, 1: 2278342, 12: 2278342, 5793: 2305012, 5794: 2305011, 5796: 2314065, 5799: 2314249, 5800: 2314443}
[2026-02-03 02:04:40] 2026-02-03 07:04:08,708 | INFO     | --------------------------------------------------
[2026-02-03 02:04:40] 2026-02-03 07:04:08,708 | INFO     | 
[2026-02-03 02:04:40] 2026-02-03 07:04:08,708 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-03 02:04:40] 2026-02-03 07:04:08,731 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,732 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,732 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,732 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,732 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,732 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,733 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,733 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,733 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,733 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,733 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,733 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,733 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,734 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,734 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,734 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,734 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,734 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,734 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,735 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 02:04:40] 2026-02-03 07:04:08,735 | INFO     | job 6997548251 has completed (purged errors)
[2026-02-03 02:04:40] 2026-02-03 07:04:08,735 | INFO     | overall cleanup function is called
[2026-02-03 02:04:40] 2026-02-03 07:04:09,743 | INFO     | --- collectZombieJob: --- 10, [23927]
[2026-02-03 02:04:40] 2026-02-03 07:04:09,743 | INFO     | zombie collector waiting for pid 23927
[2026-02-03 02:04:40] 2026-02-03 07:04:09,744 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 02:04:40] 2026-02-03 07:04:09,744 | INFO     | collected zombie processes
[2026-02-03 02:04:40] 2026-02-03 07:04:09,744 | INFO     | will attempt to kill all subprocesses of pid=23927
[2026-02-03 02:04:40] 2026-02-03 07:04:09,831 | INFO     | process IDs to be killed: [23927] (in reverse order)
[2026-02-03 02:04:40] 2026-02-03 07:04:09,881 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 02:04:40] 2026-02-03 07:04:09,882 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 02:04:40] 2026-02-03 07:04:09,885 | INFO     | did not find any defunct processes belonging to 23927
[2026-02-03 02:04:40] 2026-02-03 07:04:09,888 | INFO     | did not find any defunct processes belonging to 23927
[2026-02-03 02:04:40] 2026-02-03 07:04:09,888 | INFO     | ready for new job
[2026-02-03 02:04:40] 2026-02-03 07:04:09,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 02:04:40] 2026-02-03 07:04:09,890 | INFO     | **************************************
[2026-02-03 02:04:40] 2026-02-03 07:04:09,890 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 02:04:40] 2026-02-03 07:04:09,890 | INFO     | **************************************
[2026-02-03 02:04:40] 2026-02-03 07:04:09,891 | INFO     | 
[2026-02-03 02:04:40] 2026-02-03 07:04:09,891 | INFO     | architecture information:
[2026-02-03 02:04:40] 2026-02-03 07:04:09,892 | INFO     | executing command: cat /etc/os-release
[2026-02-03 02:04:40] 2026-02-03 07:04:09,906 | INFO     | cat /etc/os-release:
[2026-02-03 02:04:40] NAME="CentOS Linux"
[2026-02-03 02:04:40] VERSION="7 (Core)"
[2026-02-03 02:04:40] ID="centos"
[2026-02-03 02:04:40] ID_LIKE="rhel fedora"
[2026-02-03 02:04:40] VERSION_ID="7"
[2026-02-03 02:04:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 02:04:40] ANSI_COLOR="0;31"
[2026-02-03 02:04:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 02:04:40] HOME_URL="https://www.centos.org/"
[2026-02-03 02:04:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 02:04:40] 
[2026-02-03 02:04:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 02:04:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 02:04:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 02:04:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 02:04:40] 
[2026-02-03 02:04:40] 2026-02-03 07:04:09,906 | INFO     | **************************************
[2026-02-03 02:04:40] 2026-02-03 07:04:10,409 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-03 02:04:40] 2026-02-03 07:04:10,424 | INFO     | sufficient remaining disk space (28426895360 B)
[2026-02-03 02:04:40] 2026-02-03 07:04:10,424 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 02:04:40] 2026-02-03 07:04:10,425 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 02:04:40] 2026-02-03 07:04:10,425 | INFO     | update_server=False
[2026-02-03 02:04:40] 2026-02-03 07:04:10,425 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 02:04:40] 2026-02-03 07:04:10,425 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 02:04:40] 2026-02-03 07:04:10,426 | INFO     | aborting loop
[2026-02-03 02:04:40] 2026-02-03 07:04:10,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 02:04:40] 2026-02-03 07:04:10,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 02:04:40] 2026-02-03 07:04:10,464 | INFO     | all data control threads have been joined
[2026-02-03 02:04:40] 2026-02-03 07:04:10,509 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 02:04:40] 2026-02-03 07:04:10,658 | INFO     | all payload control threads have been joined
[2026-02-03 02:04:40] 2026-02-03 07:04:11,431 | INFO     | [job] retrieve thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:11,431 | INFO     | [job] job monitor thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:11,432 | INFO     | [job] queue monitor thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:11,467 | INFO     | [data] control thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:11,472 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:11,527 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:11,621 | INFO     | all job control threads have been joined
[2026-02-03 02:04:40] 2026-02-03 07:04:11,633 | INFO     | [payload] validate_post thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:11,663 | INFO     | [payload] control thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:11,727 | INFO     | [data] copytool_in thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:12,010 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:12,326 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:12,515 | INFO     | [data] copytool_out thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:12,624 | INFO     | [job] control thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:12,655 | INFO     | [payload] failed_post thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:12,756 | INFO     | [job] validate thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:14,430 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 02:04:40] 2026-02-03 07:04:25,802 | INFO     | [monitor] cgroup control has ended
[2026-02-03 02:04:40] 2026-02-03 07:04:25,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140116069087040)>', '<ExcThread(monitor, started 140115045246720)>']
[2026-02-03 02:04:40] 2026-02-03 07:04:30,850 | INFO     | all workflow threads have been joined
[2026-02-03 02:04:40] 2026-02-03 07:04:30,851 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 02:04:40] 2026-02-03 07:04:30,851 | INFO     | traces error code: 0
[2026-02-03 02:04:40] 2026-02-03 07:04:30,852 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 02:04:40] 2026-02-03 07:04:40,564 | INFO     | PID=19547 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-03 02:04:40] 2026-02-03 07:04:40,565 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 02:04:40] 2026-02-03 07:04:40,566 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 02:04:40] 2026-02-03 07:04:40,566 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 02:04:40] 2026-02-03 07:04:40,566 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 02:04:40] 2026-02-03 07:04:40,566 | INFO     | [monitor] control thread has ended
[2026-02-03 02:04:40] 2026-02-03 07:04:40,669 [wrapper] ==== pilot stdout END ====
[2026-02-03 02:04:40] 2026-02-03 07:04:40,672 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 02:04:40] 2026-02-03 07:04:40,675 [wrapper] pilotpid: 19547
[2026-02-03 02:04:40] 2026-02-03 07:04:40,679 [wrapper] Pilot exit status: 0
[2026-02-03 02:04:40] 2026-02-03 07:04:40,693 [wrapper] pandaids: 6997548251
[2026-02-03 02:04:40] 2026-02-03 07:04:40,732 [wrapper] cleanup supervisor_pilot 18955 19548
[2026-02-03 02:04:40] 2026-02-03 07:04:40,735 [wrapper] Test setup, not cleaning
[2026-02-03 02:04:40] 2026-02-03 07:04:40,739 [wrapper] apfmon messages muted
[2026-02-03 02:04:40] 2026-02-03 07:04:40,743 [wrapper] ==== wrapper stdout END ====
[2026-02-03 02:04:40] 2026-02-03 07:04:40,746 [wrapper] ==== wrapper stderr END ====
[2026-02-03 02:04:40]  *** Error codes and diagnostics ***
[2026-02-03 02:04:40]     "exeErrorCode": 0,
[2026-02-03 02:04:40]     "exeErrorDiag": "",
[2026-02-03 02:04:40]     "pilotErrorCode": 0,
[2026-02-03 02:04:40]     "pilotErrorDiag": "",
[2026-02-03 02:04:40]  *** Listing of results directory ***
[2026-02-03 02:04:40] total 888836
[2026-02-03 02:04:40] -rwx------ 1 boincer umatlas     36322 Feb  2 17:19 runpilot2-wrapper.sh
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas      5111 Feb  2 17:19 queuedata.json
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas    584422 Feb  2 17:19 pilot3.tar.gz
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas       100 Feb  3 00:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 02:04:40] -rwxr-xr-x 1 boincer umatlas      7986 Feb  3 00:26 run_atlas
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas       105 Feb  3 00:26 job.xml
[2026-02-03 02:04:40] -rw-r--r-- 2 boincer umatlas 645190485 Feb  3 00:26 EVNT.48431078._000168.pool.root.1
[2026-02-03 02:04:40] -rw-r--r-- 2 boincer umatlas     15845 Feb  3 00:26 start_atlas.sh
[2026-02-03 02:04:40] drwxrwx--x 2 boincer umatlas      4096 Feb  3 00:26 shared
[2026-02-03 02:04:40] -rw-r--r-- 2 boincer umatlas    597769 Feb  3 00:26 input.tar.gz
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas         0 Feb  3 00:26 boinc_lockfile
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas      2557 Feb  3 00:26 pandaJob.out
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas        57 Feb  3 00:26 setup.sh.local
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas   1009324 Feb  3 00:27 agis_schedconf.cvmfs.json
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas   1511668 Feb  3 00:27 agis_ddmendpoints.agis.ALL.json
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas       445 Feb  3 00:27 workernode_map.json
[2026-02-03 02:04:40] drwx------ 5 boincer umatlas      4096 Feb  3 00:27 pilot3
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas      5953 Feb  3 02:00 init_data.xml
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas 258533966 Feb  3 02:03 HITS.48431080._008716.pool.root.1
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas       530 Feb  3 02:03 boinc_task_state.xml
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas      1047 Feb  3 02:03 memory_monitor_summary.json
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas    415484 Feb  3 02:04 log.48431080._008716.job.log.tgz.1
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas      6421 Feb  3 02:04 heartbeat.json
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas      8192 Feb  3 02:04 boinc_mmap_file
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas        27 Feb  3 02:04 wrapper_checkpoint.txt
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas        95 Feb  3 02:04 pilot_heartbeat.json
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas       745 Feb  3 02:04 pilotlog.txt
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas    832037 Feb  3 02:04 log.48431080._008716.job.log.1
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas       357 Feb  3 02:04 output.list
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas       620 Feb  3 02:04 runtime_log
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas   1269760 Feb  3 02:04 result.tar.gz
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas      9343 Feb  3 02:04 runtime_log.err
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas       659 Feb  3 02:04 BCfKDmFRH78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmBfTKDmgWIYkm.diag
[2026-02-03 02:04:40] -rw-r--r-- 1 boincer umatlas     21335 Feb  3 02:04 stderr.txt
[2026-02-03 02:04:40] HITS file was successfully produced:
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas 258533966 Feb  3 02:03 shared/HITS.pool.root.1
[2026-02-03 02:04:40]  *** Contents of shared directory: ***
[2026-02-03 02:04:40] total 884396
[2026-02-03 02:04:40] -rw-r--r-- 2 boincer umatlas 645190485 Feb  3 00:26 ATLAS.root_0
[2026-02-03 02:04:40] -rw-r--r-- 2 boincer umatlas     15845 Feb  3 00:26 start_atlas.sh
[2026-02-03 02:04:40] -rw-r--r-- 2 boincer umatlas    597769 Feb  3 00:26 input.tar.gz
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas 258533966 Feb  3 02:03 HITS.pool.root.1
[2026-02-03 02:04:40] -rw------- 1 boincer umatlas   1269760 Feb  3 02:04 result.tar.gz
02:04:42 (15816): run_atlas exited; CPU time 63474.333103
02:04:42 (15816): called boinc_finish(0)

</stderr_txt>
]]>

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