Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:57:28 (1756914): wrapper (7.7.26015): starting
00:57:28 (1756914): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 00:57:28] Arguments: --nthreads 4
[2026-02-04 00:57:28] Threads: 4
[2026-02-04 00:57:28] Checking for CVMFS
[2026-02-04 00:57:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 00:57:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 00:57:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 00:57:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 00:57:29] 2.9.2.0 1309670 843 73596 155848 2 50 30764444 36864000 0 130560 0 394264 99.979 33212 19559 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-04 00:57:29] CVMFS is ok
[2026-02-04 00:57:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 00:57:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 00:57:29] Further information can be found at the LHC@home message board.
[2026-02-04 00:57:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 00:57:29] Checking for apptainer binary...
[2026-02-04 00:57:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 00:57:29] Running /usr/bin/apptainer --version
[2026-02-04 00:57:29] apptainer version 1.4.1-1.1
[2026-02-04 00:57:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 00:57:29] atlasA237
[2026-02-04 00:57:29] apptainer works
[2026-02-04 00:57:29] Set ATHENA_PROC_NUMBER=4
[2026-02-04 00:57:29] Set ATHENA_CORE_NUMBER=4
[2026-02-04 00:57:29] Starting ATLAS job with PandaID=6993747052
[2026-02-04 00:57:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 02:15:14]  *** The last 200 lines of the pilot log: ***
[2026-02-04 02:15:14] 2026-02-04 01:14:42,590 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 02:15:14] 2026-02-04 01:14:42,590 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 02:15:14] 2026-02-04 01:14:42,590 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 02:15:14] 2026-02-04 01:14:42,590 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 02:15:14] 2026-02-04 01:14:42,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 02:15:14] 2026-02-04 01:14:42,590 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 02:15:14] 2026-02-04 01:14:42,590 | INFO     | job 6993747052 has completed (purged errors)
[2026-02-04 02:15:14] 2026-02-04 01:14:42,590 | INFO     | overall cleanup function is called
[2026-02-04 02:15:14] 2026-02-04 01:14:43,597 | INFO     | --- collectZombieJob: --- 10, [1765727]
[2026-02-04 02:15:14] 2026-02-04 01:14:43,597 | INFO     | zombie collector waiting for pid 1765727
[2026-02-04 02:15:14] 2026-02-04 01:14:43,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 02:15:14] 2026-02-04 01:14:43,597 | INFO     | collected zombie processes
[2026-02-04 02:15:14] 2026-02-04 01:14:43,597 | INFO     | will attempt to kill all subprocesses of pid=1765727
[2026-02-04 02:15:14] 2026-02-04 01:14:43,663 | INFO     | process IDs to be killed: [1765727] (in reverse order)
[2026-02-04 02:15:14] 2026-02-04 01:14:43,704 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 02:15:14] 2026-02-04 01:14:43,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 02:15:14] 2026-02-04 01:14:43,707 | INFO     | did not find any defunct processes belonging to 1765727
[2026-02-04 02:15:14] 2026-02-04 01:14:43,709 | INFO     | did not find any defunct processes belonging to 1765727
[2026-02-04 02:15:14] 2026-02-04 01:14:43,709 | INFO     | ready for new job
[2026-02-04 02:15:14] 2026-02-04 01:14:43,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 02:15:14] 2026-02-04 01:14:43,710 | INFO     | **************************************
[2026-02-04 02:15:14] 2026-02-04 01:14:43,710 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 02:15:14] 2026-02-04 01:14:43,710 | INFO     | **************************************
[2026-02-04 02:15:14] 2026-02-04 01:14:43,710 | INFO     | 
[2026-02-04 02:15:14] 2026-02-04 01:14:43,710 | INFO     | architecture information:
[2026-02-04 02:15:14] 2026-02-04 01:14:43,711 | INFO     | executing command: cat /etc/os-release
[2026-02-04 02:15:14] 2026-02-04 01:14:43,725 | INFO     | cat /etc/os-release:
[2026-02-04 02:15:14] NAME="CentOS Linux"
[2026-02-04 02:15:14] VERSION="7 (Core)"
[2026-02-04 02:15:14] ID="centos"
[2026-02-04 02:15:14] ID_LIKE="rhel fedora"
[2026-02-04 02:15:14] VERSION_ID="7"
[2026-02-04 02:15:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 02:15:14] ANSI_COLOR="0;31"
[2026-02-04 02:15:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 02:15:14] HOME_URL="https://www.centos.org/"
[2026-02-04 02:15:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 02:15:14] 
[2026-02-04 02:15:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 02:15:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 02:15:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 02:15:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 02:15:14] 
[2026-02-04 02:15:14] 2026-02-04 01:14:43,725 | INFO     | **************************************
[2026-02-04 02:15:14] 2026-02-04 01:14:44,228 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-04 02:15:14] 2026-02-04 01:14:44,242 | INFO     | sufficient remaining disk space (324190339072 B)
[2026-02-04 02:15:14] 2026-02-04 01:14:44,242 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 02:15:14] 2026-02-04 01:14:44,242 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 02:15:14] 2026-02-04 01:14:44,243 | INFO     | update_server=False
[2026-02-04 02:15:14] 2026-02-04 01:14:44,243 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 02:15:14] 2026-02-04 01:14:44,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 02:15:14] 2026-02-04 01:14:44,243 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 02:15:14] 2026-02-04 01:14:44,519 | INFO     | all payload control threads have been joined
[2026-02-04 02:15:14] 2026-02-04 01:14:44,836 | INFO     | all data control threads have been joined
[2026-02-04 02:15:14] 2026-02-04 01:14:44,876 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 02:15:14] 2026-02-04 01:14:44,876 | INFO     | aborting loop
[2026-02-04 02:15:14] 2026-02-04 01:14:45,248 | INFO     | [job] retrieve thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:45,248 | INFO     | [job] queue monitor thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:45,330 | INFO     | [data] copytool_in thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:45,496 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 02:15:14] 2026-02-04 01:14:45,525 | INFO     | [payload] control thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:45,643 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:45,764 | INFO     | [payload] failed_post thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:45,842 | INFO     | [data] control thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:45,853 | INFO     | all job control threads have been joined
[2026-02-04 02:15:14] 2026-02-04 01:14:45,881 | INFO     | [job] job monitor thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:46,248 | INFO     | [data] copytool_out thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:46,396 | INFO     | [payload] validate_post thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:46,477 | INFO     | [job] validate thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:46,650 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:46,693 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:46,858 | INFO     | [job] control thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:46,918 | INFO     | [monitor] cgroup control has ended
[2026-02-04 02:15:14] 2026-02-04 01:14:49,503 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:54,587 | INFO     | job.realtimelogging is not enabled
[2026-02-04 02:15:14] 2026-02-04 01:14:55,593 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 02:15:14] 2026-02-04 01:14:57,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140554256701248)>', '<ExcThread(monitor, started 140553391953664)>']
[2026-02-04 02:15:14] 2026-02-04 01:15:02,613 | INFO     | all workflow threads have been joined
[2026-02-04 02:15:14] 2026-02-04 01:15:02,614 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 02:15:14] 2026-02-04 01:15:02,614 | INFO     | traces error code: 0
[2026-02-04 02:15:14] 2026-02-04 01:15:02,614 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 02:15:14] 2026-02-04 01:15:14,319 | INFO     | PID=1761106 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 02:15:14] 2026-02-04 01:15:14,320 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 02:15:14] 2026-02-04 01:15:14,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 02:15:14] 2026-02-04 01:15:14,320 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 02:15:14] 2026-02-04 01:15:14,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 02:15:14] 2026-02-04 01:15:14,320 | INFO     | [monitor] control thread has ended
[2026-02-04 02:15:14] 2026-02-04 01:15:14,389 [wrapper] ==== pilot stdout END ====
[2026-02-04 02:15:14] 2026-02-04 01:15:14,392 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 02:15:14] 2026-02-04 01:15:14,396 [wrapper] pilotpid: 1761106
[2026-02-04 02:15:14] 2026-02-04 01:15:14,400 [wrapper] Pilot exit status: 0
[2026-02-04 02:15:14] 2026-02-04 01:15:14,411 [wrapper] pandaids: 6993747052
[2026-02-04 02:15:14] 2026-02-04 01:15:14,437 [wrapper] cleanup supervisor_pilot 1794538 1761107
[2026-02-04 02:15:14] 2026-02-04 01:15:14,441 [wrapper] Test setup, not cleaning
[2026-02-04 02:15:14] 2026-02-04 01:15:14,445 [wrapper] apfmon messages muted
[2026-02-04 02:15:14] 2026-02-04 01:15:14,448 [wrapper] ==== wrapper stdout END ====
[2026-02-04 02:15:14] 2026-02-04 01:15:14,452 [wrapper] ==== wrapper stderr END ====
[2026-02-04 02:15:14]  *** Error codes and diagnostics ***
[2026-02-04 02:15:14]     "exeErrorCode": 0,
[2026-02-04 02:15:14]     "exeErrorDiag": "",
[2026-02-04 02:15:14]     "pilotErrorCode": 0,
[2026-02-04 02:15:14]     "pilotErrorDiag": "",
[2026-02-04 02:15:14]  *** Listing of results directory ***
[2026-02-04 02:15:14] total 668948
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc    584422 Feb  3 05:59 pilot3.tar.gz
[2026-02-04 02:15:14] -rwx------ 1 boinc boinc     36322 Feb  3 06:01 runpilot2-wrapper.sh
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc      5111 Feb  3 06:02 queuedata.json
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc       100 Feb  4 00:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 02:15:14] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 00:57 run_atlas
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc       105 Feb  4 00:57 job.xml
[2026-02-04 02:15:14] -rw-r--r-- 2 boinc boinc 493186351 Feb  4 00:57 EVNT.48318032._000150.pool.root.1
[2026-02-04 02:15:14] -rw-r--r-- 2 boinc boinc    597764 Feb  4 00:57 input.tar.gz
[2026-02-04 02:15:14] -rw-r--r-- 2 boinc boinc     15845 Feb  4 00:57 start_atlas.sh
[2026-02-04 02:15:14] drwxrwx--x 2 boinc boinc      4096 Feb  4 00:57 shared
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc         0 Feb  4 00:57 boinc_setup_complete
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc      6371 Feb  4 00:57 init_data.xml
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc         0 Feb  4 00:57 boinc_lockfile
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc      2536 Feb  4 00:57 pandaJob.out
[2026-02-04 02:15:14] -rw------- 1 boinc boinc   1009236 Feb  4 00:57 agis_schedconf.cvmfs.json
[2026-02-04 02:15:14] -rw------- 1 boinc boinc   1511668 Feb  4 00:57 agis_ddmendpoints.agis.ALL.json
[2026-02-04 02:15:14] -rw------- 1 boinc boinc       423 Feb  4 00:57 workernode_map.json
[2026-02-04 02:15:14] drwx------ 5 boinc boinc      4096 Feb  4 00:57 pilot3
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc       530 Feb  4 02:14 boinc_task_state.xml
[2026-02-04 02:15:14] -rw------- 1 boinc boinc 185936342 Feb  4 02:14 HITS.48318034._007075.pool.root.1
[2026-02-04 02:15:14] -rw------- 1 boinc boinc      1025 Feb  4 02:14 memory_monitor_summary.json
[2026-02-04 02:15:14] -rw------- 1 boinc boinc    301100 Feb  4 02:14 log.48318034._007075.job.log.tgz.1
[2026-02-04 02:15:14] -rw------- 1 boinc boinc      6321 Feb  4 02:14 heartbeat.json
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc      8192 Feb  4 02:15 boinc_mmap_file
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc        27 Feb  4 02:15 wrapper_checkpoint.txt
[2026-02-04 02:15:14] -rw------- 1 boinc boinc       747 Feb  4 02:15 pilotlog.txt
[2026-02-04 02:15:14] -rw------- 1 boinc boinc        95 Feb  4 02:15 pilot_heartbeat.json
[2026-02-04 02:15:14] -rw------- 1 boinc boinc    679243 Feb  4 02:15 log.48318034._007075.job.log.1
[2026-02-04 02:15:14] -rw------- 1 boinc boinc       357 Feb  4 02:15 output.list
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc       620 Feb  4 02:15 runtime_log
[2026-02-04 02:15:14] -rw------- 1 boinc boinc    993280 Feb  4 02:15 result.tar.gz
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc      8911 Feb  4 02:15 runtime_log.err
[2026-02-04 02:15:14] -rw------- 1 boinc boinc       660 Feb  4 02:15 d24LDmIiN78n9Rq4apOajLDm4fhM0noT9bVooX4SDm4uTKDmqq3Ojn.diag
[2026-02-04 02:15:14] -rw-r--r-- 1 boinc boinc     11509 Feb  4 02:15 stderr.txt
[2026-02-04 02:15:14] HITS file was successfully produced:
[2026-02-04 02:15:14] -rw------- 1 boinc boinc 185936342 Feb  4 02:14 shared/HITS.pool.root.1
[2026-02-04 02:15:14]  *** Contents of shared directory: ***
[2026-02-04 02:15:14] total 664788
[2026-02-04 02:15:14] -rw-r--r-- 2 boinc boinc 493186351 Feb  4 00:57 ATLAS.root_0
[2026-02-04 02:15:14] -rw-r--r-- 2 boinc boinc    597764 Feb  4 00:57 input.tar.gz
[2026-02-04 02:15:14] -rw-r--r-- 2 boinc boinc     15845 Feb  4 00:57 start_atlas.sh
[2026-02-04 02:15:14] -rw------- 1 boinc boinc 185936342 Feb  4 02:14 HITS.pool.root.1
[2026-02-04 02:15:14] -rw------- 1 boinc boinc    993280 Feb  4 02:15 result.tar.gz
02:15:16 (1756914): run_atlas exited; CPU time 17312.011752
02:15:16 (1756914): called boinc_finish(0)

</stderr_txt>
]]>

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