Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:43:36 (19989): wrapper (7.7.26015): starting
20:43:36 (19989): wrapper: running run_atlas (--nthreads 8)
[2026-02-03 20:43:36] Arguments: --nthreads 8
[2026-02-03 20:43:36] Threads: 8
[2026-02-03 20:43:36] Checking for CVMFS
[2026-02-03 20:43:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 20:43:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 20:43:37] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 20:43:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 20:43:37] 2.11.2.0 32469 71850 106476 155842 0 190 17895002 25165825 3809 130560 0 25225070 99.735 27876731 2555 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-03 20:43:37] CVMFS is ok
[2026-02-03 20:43:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 20:43:37] Checking for apptainer binary...
[2026-02-03 20:43:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 20:43:37] Running /usr/bin/apptainer --version
[2026-02-03 20:43:37] apptainer version 1.3.2-1.el7
[2026-02-03 20:43:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 20:43:38] cg-vwn363.simple-grid.lan
[2026-02-03 20:43:38] apptainer works
[2026-02-03 20:43:39] Set ATHENA_PROC_NUMBER=8
[2026-02-03 20:43:39] Set ATHENA_CORE_NUMBER=8
[2026-02-03 20:43:39] Starting ATLAS job with PandaID=6993748209
[2026-02-03 20:43:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 05:25:26]  *** The last 200 lines of the pilot log: ***
[2026-02-04 05:25:26] 2026-02-04 04:24:22,532 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,532 | INFO     | log transfer has been attempted: DONE
[2026-02-04 05:25:26] 2026-02-04 04:24:22,532 | INFO     | job 6993748209 has finished - writing final server update
[2026-02-04 05:25:26] 2026-02-04 04:24:22,533 | INFO     | total number of processed events: 400 (read)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,535 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6993748209/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,536 | INFO     | extracted standard info from prmon json
[2026-02-04 05:25:26] 2026-02-04 04:24:22,536 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 05:25:26] 2026-02-04 04:24:22,536 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 05:25:26] 2026-02-04 04:24:22,536 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 05:25:26] 2026-02-04 04:24:22,536 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 05:25:26] 2026-02-04 04:24:22,548 | INFO     | fitting pss+swap vs Time
[2026-02-04 05:25:26] 2026-02-04 04:24:22,549 | INFO     | sum of square deviations: 41375138560.0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,558 | INFO     | sum of deviations: 71048267395.0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,558 | INFO     | mean x: 1770163457.0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,558 | INFO     | mean y: 2506688.657534247
[2026-02-04 05:25:26] 2026-02-04 04:24:22,559 | INFO     | intersect: -3037170059.334813
[2026-02-04 05:25:26] 2026-02-04 04:24:22,559 | INFO     | chi2: 1.704858345642538
[2026-02-04 05:25:26] 2026-02-04 04:24:22,560 | INFO     | sum of square deviations: 40172446242.5
[2026-02-04 05:25:26] 2026-02-04 04:24:22,568 | INFO     | sum of deviations: 69796042528.5
[2026-02-04 05:25:26] 2026-02-04 04:24:22,568 | INFO     | mean x: 1770163304.5
[2026-02-04 05:25:26] 2026-02-04 04:24:22,568 | INFO     | mean y: 2506529.8754940713
[2026-02-04 05:25:26] 2026-02-04 04:24:22,568 | INFO     | intersect: -3072994337.9945664
[2026-02-04 05:25:26] 2026-02-04 04:24:22,569 | INFO     | chi2: 1.7050484584433068
[2026-02-04 05:25:26] 2026-02-04 04:24:22,569 | INFO     | current chi2=1.7050484584433068 (change=-0.011151237359676897 %)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,569 | INFO     | right removable region: 505
[2026-02-04 05:25:26] 2026-02-04 04:24:22,570 | INFO     | sum of square deviations: 40172446242.5
[2026-02-04 05:25:26] 2026-02-04 04:24:22,578 | INFO     | sum of deviations: -11469009061.999985
[2026-02-04 05:25:26] 2026-02-04 04:24:22,578 | INFO     | mean x: 1770163609.5
[2026-02-04 05:25:26] 2026-02-04 04:24:22,578 | INFO     | mean y: 2517107.9486166006
[2026-02-04 05:25:26] 2026-02-04 04:24:22,578 | INFO     | intersect: 507888933.10522854
[2026-02-04 05:25:26] 2026-02-04 04:24:22,579 | INFO     | chi2: 0.1977043539558187
[2026-02-04 05:25:26] 2026-02-04 04:24:22,579 | INFO     | current chi2=0.1977043539558187 (change=88.403473258577 %)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,580 | INFO     | sum of square deviations: 38993289250.0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,588 | INFO     | sum of deviations: -19059639404.99998
[2026-02-04 05:25:26] 2026-02-04 04:24:22,588 | INFO     | mean x: 1770163762.0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,588 | INFO     | mean y: 2518089.5728542916
[2026-02-04 05:25:26] 2026-02-04 04:24:22,588 | INFO     | intersect: 867761408.1143442
[2026-02-04 05:25:26] 2026-02-04 04:24:22,589 | INFO     | chi2: 0.18851094419019557
[2026-02-04 05:25:26] 2026-02-04 04:24:22,589 | INFO     | current chi2=0.18851094419019557 (change=4.6500795666227965 %)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,589 | INFO     | left removable region: 20
[2026-02-04 05:25:26] 2026-02-04 04:24:22,590 | INFO     | sum of square deviations: 35375435370.0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,597 | INFO     | sum of deviations: 10810268476.000004
[2026-02-04 05:25:26] 2026-02-04 04:24:22,598 | INFO     | mean x: 1770163884.0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,598 | INFO     | mean y: 2513893.9175257734
[2026-02-04 05:25:26] 2026-02-04 04:24:22,598 | INFO     | intersect: -538424942.0971143
[2026-02-04 05:25:26] 2026-02-04 04:24:22,599 | INFO     | chi2: 0.12606013562042084
[2026-02-04 05:25:26] 2026-02-04 04:24:22,599 | INFO     | current memory leak: 0.31 B/s (using 485 data points, chi2=0.13)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,600 | INFO     | could have reported an average CPU frequency of 1999 MHz (21 samples)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,600 | INFO     | ..............................
[2026-02-04 05:25:26] 2026-02-04 04:24:22,600 | INFO     | . Timing measurements:
[2026-02-04 05:25:26] 2026-02-04 04:24:22,600 | INFO     | . get job = 0 s
[2026-02-04 05:25:26] 2026-02-04 04:24:22,600 | INFO     | . initial setup = 11 s
[2026-02-04 05:25:26] 2026-02-04 04:24:22,600 | INFO     | . payload setup = 14 s
[2026-02-04 05:25:26] 2026-02-04 04:24:22,600 | INFO     | . stage-in = 0 s
[2026-02-04 05:25:26] 2026-02-04 04:24:22,600 | INFO     | . payload execution = 31171 s
[2026-02-04 05:25:26] 2026-02-04 04:24:22,601 | INFO     | . stage-out = 1 s
[2026-02-04 05:25:26] 2026-02-04 04:24:22,601 | INFO     | . log creation = 0 s
[2026-02-04 05:25:26] 2026-02-04 04:24:22,601 | INFO     | ..............................
[2026-02-04 05:25:26] 2026-02-04 04:24:22,714 | INFO     | 
[2026-02-04 05:25:26] 2026-02-04 04:24:22,714 | INFO     | job summary report
[2026-02-04 05:25:26] 2026-02-04 04:24:22,714 | INFO     | --------------------------------------------------
[2026-02-04 05:25:26] 2026-02-04 04:24:22,714 | INFO     | PanDA job id: 6993748209
[2026-02-04 05:25:26] 2026-02-04 04:24:22,715 | INFO     | task id: 48329817
[2026-02-04 05:25:26] 2026-02-04 04:24:22,715 | INFO     | errors: (none)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,715 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 05:25:26] 2026-02-04 04:24:22,715 | INFO     | pilot state: finished 
[2026-02-04 05:25:26] 2026-02-04 04:24:22,715 | INFO     | transexitcode: 0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,715 | INFO     | exeerrorcode: 0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,715 | INFO     | exeerrordiag: 
[2026-02-04 05:25:26] 2026-02-04 04:24:22,715 | INFO     | exitcode: 0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,716 | INFO     | exitmsg: OK
[2026-02-04 05:25:26] 2026-02-04 04:24:22,716 | INFO     | cpuconsumptiontime: 134803 s
[2026-02-04 05:25:26] 2026-02-04 04:24:22,716 | INFO     | nevents: 400
[2026-02-04 05:25:26] 2026-02-04 04:24:22,716 | INFO     | neventsw: 0
[2026-02-04 05:25:26] 2026-02-04 04:24:22,716 | INFO     | pid: 28610
[2026-02-04 05:25:26] 2026-02-04 04:24:22,716 | INFO     | pgrp: 28610
[2026-02-04 05:25:26] 2026-02-04 04:24:22,716 | INFO     | corecount: 8
[2026-02-04 05:25:26] 2026-02-04 04:24:22,716 | INFO     | event service: False
[2026-02-04 05:25:26] 2026-02-04 04:24:22,716 | INFO     | sizes: {0: 2277909, 1: 2278426, 2: 2278454, 31189: 2316795, 31192: 2325849, 31193: 2325987}
[2026-02-04 05:25:26] 2026-02-04 04:24:22,717 | INFO     | --------------------------------------------------
[2026-02-04 05:25:26] 2026-02-04 04:24:22,717 | INFO     | 
[2026-02-04 05:25:26] 2026-02-04 04:24:22,717 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-02-04 05:25:26] 2026-02-04 04:24:22,757 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,758 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,758 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,758 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,758 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,760 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,760 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 05:25:26] 2026-02-04 04:24:22,760 | INFO     | job 6993748209 has completed (purged errors)
[2026-02-04 05:25:26] 2026-02-04 04:24:22,760 | INFO     | overall cleanup function is called
[2026-02-04 05:25:26] 2026-02-04 04:24:23,770 | INFO     | --- collectZombieJob: --- 10, [28610]
[2026-02-04 05:25:26] 2026-02-04 04:24:23,770 | INFO     | zombie collector waiting for pid 28610
[2026-02-04 05:25:26] 2026-02-04 04:24:23,770 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 05:25:26] 2026-02-04 04:24:23,770 | INFO     | collected zombie processes
[2026-02-04 05:25:26] 2026-02-04 04:24:23,771 | INFO     | will attempt to kill all subprocesses of pid=28610
[2026-02-04 05:25:26] 2026-02-04 04:24:23,983 | INFO     | process IDs to be killed: [28610] (in reverse order)
[2026-02-04 05:25:26] 2026-02-04 04:24:24,016 | WARNING  | process 28610 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 05:25:26] 2026-02-04 04:24:24,083 | INFO     | using path: /var/lib/boinc/slots/9/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 05:25:26] 2026-02-04 04:24:24,099 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 05:25:26] 2026-02-04 04:24:24,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 05:25:26] 2026-02-04 04:24:24,107 | INFO     | did not find any defunct processes belonging to 28610
[2026-02-04 05:25:26] 2026-02-04 04:24:24,115 | INFO     | did not find any defunct processes belonging to 28610
[2026-02-04 05:25:26] 2026-02-04 04:24:24,115 | INFO     | ready for new job
[2026-02-04 05:25:26] 2026-02-04 04:24:24,115 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 05:25:26] 2026-02-04 04:24:24,119 | INFO     | **************************************
[2026-02-04 05:25:26] 2026-02-04 04:24:24,119 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 05:25:26] 2026-02-04 04:24:24,119 | INFO     | **************************************
[2026-02-04 05:25:26] 2026-02-04 04:24:24,119 | INFO     | 
[2026-02-04 05:25:26] 2026-02-04 04:24:24,120 | INFO     | pilot is running in a VM
[2026-02-04 05:25:26] 2026-02-04 04:24:24,120 | INFO     | architecture information:
[2026-02-04 05:25:26] 2026-02-04 04:24:24,121 | INFO     | executing command: cat /etc/os-release
[2026-02-04 05:25:26] 2026-02-04 04:24:24,159 | INFO     | cat /etc/os-release:
[2026-02-04 05:25:26] NAME="CentOS Linux"
[2026-02-04 05:25:26] VERSION="7 (Core)"
[2026-02-04 05:25:26] ID="centos"
[2026-02-04 05:25:26] ID_LIKE="rhel fedora"
[2026-02-04 05:25:26] VERSION_ID="7"
[2026-02-04 05:25:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 05:25:26] ANSI_COLOR="0;31"
[2026-02-04 05:25:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 05:25:26] HOME_URL="https://www.centos.org/"
[2026-02-04 05:25:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 05:25:26] 
[2026-02-04 05:25:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 05:25:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 05:25:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 05:25:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 05:25:26] 
[2026-02-04 05:25:26] 2026-02-04 04:24:24,159 | INFO     | **************************************
[2026-02-04 05:25:26] 2026-02-04 04:24:24,189 | INFO     | number of running child processes to parent process 28610: 1
[2026-02-04 05:25:26] 2026-02-04 04:24:24,189 | INFO     | maximum number of monitored processes: 6
[2026-02-04 05:25:26] 2026-02-04 04:24:24,189 | INFO     | aborting job monitoring since job object (job id=6993748209) has expired
[2026-02-04 05:25:26] 2026-02-04 04:24:24,662 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-02-04 05:25:26] 2026-02-04 04:24:24,681 | INFO     | sufficient remaining disk space (496921214976 B)
[2026-02-04 05:25:26] 2026-02-04 04:24:24,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 05:25:26] 2026-02-04 04:24:24,682 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 05:25:26] 2026-02-04 04:24:24,682 | INFO     | update_server=False
[2026-02-04 05:25:26] 2026-02-04 04:24:24,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 05:25:26] 2026-02-04 04:24:24,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 05:25:26] 2026-02-04 04:24:24,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 05:25:26] 2026-02-04 04:24:24,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 05:25:26] 2026-02-04 04:24:24,684 | INFO     | will abort loop
[2026-02-04 05:25:26] 2026-02-04 04:24:25,013 | INFO     | all data control threads have been joined
[2026-02-04 05:25:26] 2026-02-04 04:24:25,623 | INFO     | all job control threads have been joined
[2026-02-04 05:25:26] 2026-02-04 04:24:25,683 | INFO     | [job] retrieve thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:25,689 | INFO     | [job] queue monitor thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:25,693 | INFO     | [job] job monitor thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:25,737 | INFO     | all payload control threads have been joined
[2026-02-04 05:25:26] 2026-02-04 04:24:26,018 | INFO     | [data] control thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:26,040 | INFO     | [job] validate thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:26,055 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:26,205 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:26,560 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:26,629 | INFO     | [job] control thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:26,690 | INFO     | [data] copytool_out thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:26,743 | INFO     | [payload] control thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:26,970 | INFO     | [payload] failed_post thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:26,999 | INFO     | [data] copytool_in thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:27,211 | INFO     | [payload] validate_post thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:27,790 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 05:25:26] 2026-02-04 04:24:31,797 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:35,326 | INFO     | job.realtimelogging is not enabled
[2026-02-04 05:25:26] 2026-02-04 04:24:36,331 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 05:25:26] 2026-02-04 04:24:54,320 | INFO     | PID=24114 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-04 05:25:26] 2026-02-04 04:24:54,321 | INFO     | .. there are 7 such processes running
[2026-02-04 05:25:26] 2026-02-04 04:24:54,322 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 05:25:26] 2026-02-04 04:24:54,322 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 05:25:26] 2026-02-04 04:24:54,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 05:25:26] 2026-02-04 04:25:20,762 | INFO     | [monitor] cgroup control has ended
[2026-02-04 05:25:26] 2026-02-04 04:25:21,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622451922752)>', '<ExcThread(monitor, started 139622155785984)>']
[2026-02-04 05:25:26] 2026-02-04 04:25:21,472 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 05:25:26] 2026-02-04 04:25:21,473 | INFO     | [monitor] control thread has ended
[2026-02-04 05:25:26] 2026-02-04 04:25:26,093 | INFO     | all workflow threads have been joined
[2026-02-04 05:25:26] 2026-02-04 04:25:26,093 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 05:25:26] 2026-02-04 04:25:26,093 | INFO     | traces error code: 0
[2026-02-04 05:25:26] 2026-02-04 04:25:26,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 05:25:26] 2026-02-04 04:25:26,230 [wrapper] ==== pilot stdout END ====
[2026-02-04 05:25:26] 2026-02-04 04:25:26,246 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 05:25:26] 2026-02-04 04:25:26,252 [wrapper] pilotpid: 24114
[2026-02-04 05:25:26] 2026-02-04 04:25:26,259 [wrapper] Pilot exit status: 0
[2026-02-04 05:25:26] 2026-02-04 04:25:26,291 [wrapper] pandaids: 6993748209
[2026-02-04 05:25:26] 2026-02-04 04:25:26,460 [wrapper] cleanup supervisor_pilot 14572 24115
[2026-02-04 05:25:26] 2026-02-04 04:25:26,465 [wrapper] Test setup, not cleaning
[2026-02-04 05:25:26] 2026-02-04 04:25:26,468 [wrapper] apfmon messages muted
[2026-02-04 05:25:26] 2026-02-04 04:25:26,474 [wrapper] ==== wrapper stdout END ====
[2026-02-04 05:25:26] 2026-02-04 04:25:26,480 [wrapper] ==== wrapper stderr END ====
[2026-02-04 05:25:26]  *** Error codes and diagnostics ***
[2026-02-04 05:25:26]     "exeErrorCode": 0,
[2026-02-04 05:25:26]     "exeErrorDiag": "",
[2026-02-04 05:25:26]     "pilotErrorCode": 0,
[2026-02-04 05:25:26]     "pilotErrorDiag": "",
[2026-02-04 05:25:26]  *** Listing of results directory ***
[2026-02-04 05:25:26] total 470792
[2026-02-04 05:25:26] -rwx------. 1 boinc boinc     36322 Feb  3 05:58 runpilot2-wrapper.sh
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc      5111 Feb  3 05:59 queuedata.json
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc    584422 Feb  3 05:59 pilot3.tar.gz
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc       100 Feb  3 20:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 05:25:26] -rwxr-xr-x. 1 boinc boinc      7986 Feb  3 20:43 run_atlas
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc       105 Feb  3 20:43 job.xml
[2026-02-04 05:25:26] -rw-r--r--. 2 boinc boinc 270500103 Feb  3 20:43 EVNT.48329815._000004.pool.root.1
[2026-02-04 05:25:26] -rw-r--r--. 2 boinc boinc     15845 Feb  3 20:43 start_atlas.sh
[2026-02-04 05:25:26] drwxrwx--x. 2 boinc boinc        68 Feb  3 20:43 shared
[2026-02-04 05:25:26] -rw-r--r--. 2 boinc boinc    597778 Feb  3 20:43 input.tar.gz
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc      6391 Feb  3 20:43 init_data.xml
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc         0 Feb  3 20:43 boinc_lockfile
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc      2617 Feb  3 20:43 pandaJob.out
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc   1009252 Feb  3 20:44 agis_schedconf.cvmfs.json
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc       415 Feb  3 20:44 workernode_map.json
[2026-02-04 05:25:26] drwx------. 5 boinc boinc      4096 Feb  3 20:44 pilot3
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc 197647237 Feb  4 05:23 HITS.48329817._000094.pool.root.1
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc       531 Feb  4 05:23 boinc_task_state.xml
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc      1023 Feb  4 05:24 memory_monitor_summary.json
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc   1511668 Feb  4 05:24 agis_ddmendpoints.agis.ALL.json
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc    699403 Feb  4 05:24 log.48329817._000094.job.log.tgz.1
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc      6316 Feb  4 05:24 heartbeat.json
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc        95 Feb  4 05:24 pilot_heartbeat.json
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc      8192 Feb  4 05:25 boinc_mmap_file
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc        29 Feb  4 05:25 wrapper_checkpoint.txt
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc      5240 Feb  4 05:25 pilotlog.txt
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc   4308846 Feb  4 05:25 log.48329817._000094.job.log.1
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc       357 Feb  4 05:25 output.list
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc       620 Feb  4 05:25 runtime_log
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc   5027840 Feb  4 05:25 result.tar.gz
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc      8816 Feb  4 05:25 runtime_log.err
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc       658 Feb  4 05:25 2OmNDmvfN78n9Rq4apOajLDm4fhM0noT9bVooX4SDmOuTKDmJCCSSm.diag
[2026-02-04 05:25:26] -rw-r--r--. 1 boinc boinc     20895 Feb  4 05:25 stderr.txt
[2026-02-04 05:25:26] HITS file was successfully produced:
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc 197647237 Feb  4 05:23 shared/HITS.pool.root.1
[2026-02-04 05:25:26]  *** Contents of shared directory: ***
[2026-02-04 05:25:26] total 462692
[2026-02-04 05:25:26] -rw-r--r--. 2 boinc boinc 270500103 Feb  3 20:43 ATLAS.root_0
[2026-02-04 05:25:26] -rw-r--r--. 2 boinc boinc     15845 Feb  3 20:43 start_atlas.sh
[2026-02-04 05:25:26] -rw-r--r--. 2 boinc boinc    597778 Feb  3 20:43 input.tar.gz
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc 197647237 Feb  4 05:23 HITS.pool.root.1
[2026-02-04 05:25:26] -rw-------. 1 boinc boinc   5027840 Feb  4 05:25 result.tar.gz
05:25:28 (19989): run_atlas exited; CPU time 135238.583186
05:25:28 (19989): called boinc_finish(0)

</stderr_txt>
]]>

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