Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:49:14 (2747019): wrapper (7.7.26015): starting
16:49:14 (2747019): wrapper: running run_atlas (--nthreads 3)
[2026-02-03 16:49:14] Arguments: --nthreads 3
[2026-02-03 16:49:14] Threads: 3
[2026-02-03 16:49:14] Checking for CVMFS
[2026-02-03 16:49:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 16:49:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 16:49:15] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 16:49:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 16:49:15] 2.9.2.0 1381994 8647 88136 155835 3 49 26385709 36864000 0 130560 0 3921669 99.986 296096 18507 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-03 16:49:15] CVMFS is ok
[2026-02-03 16:49:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 16:49:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 16:49:15] Further information can be found at the LHC@home message board.
[2026-02-03 16:49:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 16:49:15] Checking for apptainer binary...
[2026-02-03 16:49:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 16:49:15] Running /usr/bin/apptainer --version
[2026-02-03 16:49:15] apptainer version 1.4.1-1.1
[2026-02-03 16:49:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 16:49:15] magicA161a
[2026-02-03 16:49:15] apptainer works
[2026-02-03 16:49:15] Set ATHENA_PROC_NUMBER=3
[2026-02-03 16:49:15] Set ATHENA_CORE_NUMBER=3
[2026-02-03 16:49:15] Starting ATLAS job with PandaID=6993667947
[2026-02-03 16:49:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 18:15:37]  *** The last 200 lines of the pilot log: ***
[2026-02-03 18:15:37] 2026-02-03 17:15:14,508 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,508 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,508 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | job 6993667947 has completed (purged errors)
[2026-02-03 18:15:37] 2026-02-03 17:15:14,509 | INFO     | overall cleanup function is called
[2026-02-03 18:15:37] 2026-02-03 17:15:15,322 | INFO     | PID=2751053 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 18:15:37] 2026-02-03 17:15:15,516 | INFO     | --- collectZombieJob: --- 10, [2755473]
[2026-02-03 18:15:37] 2026-02-03 17:15:15,516 | INFO     | zombie collector waiting for pid 2755473
[2026-02-03 18:15:37] 2026-02-03 17:15:15,516 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 18:15:37] 2026-02-03 17:15:15,516 | INFO     | collected zombie processes
[2026-02-03 18:15:37] 2026-02-03 17:15:15,517 | INFO     | will attempt to kill all subprocesses of pid=2755473
[2026-02-03 18:15:37] 2026-02-03 17:15:15,558 | INFO     | process IDs to be killed: [2755473] (in reverse order)
[2026-02-03 18:15:37] 2026-02-03 17:15:15,581 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 18:15:37] 2026-02-03 17:15:15,582 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 18:15:37] 2026-02-03 17:15:15,583 | INFO     | did not find any defunct processes belonging to 2755473
[2026-02-03 18:15:37] 2026-02-03 17:15:15,584 | INFO     | did not find any defunct processes belonging to 2755473
[2026-02-03 18:15:37] 2026-02-03 17:15:15,584 | INFO     | ready for new job
[2026-02-03 18:15:37] 2026-02-03 17:15:15,584 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 18:15:37] 2026-02-03 17:15:15,585 | INFO     | **************************************
[2026-02-03 18:15:37] 2026-02-03 17:15:15,585 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 18:15:37] 2026-02-03 17:15:15,585 | INFO     | **************************************
[2026-02-03 18:15:37] 2026-02-03 17:15:15,585 | INFO     | 
[2026-02-03 18:15:37] 2026-02-03 17:15:15,585 | INFO     | architecture information:
[2026-02-03 18:15:37] 2026-02-03 17:15:15,585 | INFO     | executing command: cat /etc/os-release
[2026-02-03 18:15:37] 2026-02-03 17:15:15,593 | INFO     | cat /etc/os-release:
[2026-02-03 18:15:37] NAME="CentOS Linux"
[2026-02-03 18:15:37] VERSION="7 (Core)"
[2026-02-03 18:15:37] ID="centos"
[2026-02-03 18:15:37] ID_LIKE="rhel fedora"
[2026-02-03 18:15:37] VERSION_ID="7"
[2026-02-03 18:15:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 18:15:37] ANSI_COLOR="0;31"
[2026-02-03 18:15:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 18:15:37] HOME_URL="https://www.centos.org/"
[2026-02-03 18:15:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 18:15:37] 
[2026-02-03 18:15:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 18:15:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 18:15:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 18:15:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 18:15:37] 
[2026-02-03 18:15:37] 2026-02-03 17:15:15,594 | INFO     | **************************************
[2026-02-03 18:15:37] 2026-02-03 17:15:16,097 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-03 18:15:37] 2026-02-03 17:15:16,110 | INFO     | sufficient remaining disk space (375738335232 B)
[2026-02-03 18:15:37] 2026-02-03 17:15:16,110 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 18:15:37] 2026-02-03 17:15:16,110 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 18:15:37] 2026-02-03 17:15:16,110 | INFO     | update_server=False
[2026-02-03 18:15:37] 2026-02-03 17:15:16,110 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 18:15:37] 2026-02-03 17:15:16,110 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-03 18:15:37] 2026-02-03 17:15:16,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 18:15:37] 2026-02-03 17:15:16,110 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 18:15:37] 2026-02-03 17:15:16,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 18:15:37] 2026-02-03 17:15:16,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 18:15:37] 2026-02-03 17:15:16,247 | INFO     | all data control threads have been joined
[2026-02-03 18:15:37] 2026-02-03 17:15:16,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 18:15:37] 2026-02-03 17:15:16,554 | INFO     | aborting loop
[2026-02-03 18:15:37] 2026-02-03 17:15:16,661 | INFO     | all payload control threads have been joined
[2026-02-03 18:15:37] 2026-02-03 17:15:16,952 | INFO     | all job control threads have been joined
[2026-02-03 18:15:37] 2026-02-03 17:15:17,116 | INFO     | [job] retrieve thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:17,196 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:17,232 | INFO     | [data] copytool_in thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:17,253 | INFO     | [data] control thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:17,388 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 18:15:37] 2026-02-03 17:15:17,559 | INFO     | [job] job monitor thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:17,633 | INFO     | [payload] validate_post thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:17,667 | INFO     | [payload] control thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:17,851 | INFO     | [payload] failed_post thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:17,958 | INFO     | [job] control thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:18,177 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:18,506 | INFO     | [job] validate thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:18,562 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:18,612 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:19,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 18:15:37] 2026-02-03 17:15:19,394 | INFO     | [data] copytool_out thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:20,032 | INFO     | [job] queue monitor thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:20,115 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 18:15:37] 2026-02-03 17:15:31,636 | INFO     | [monitor] cgroup control has ended
[2026-02-03 18:15:37] 2026-02-03 17:15:32,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139749377902400)>', '<ExcThread(monitor, started 139748857321216)>']
[2026-02-03 18:15:37] 2026-02-03 17:15:33,199 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 18:15:37] 2026-02-03 17:15:33,199 | INFO     | [monitor] control thread has ended
[2026-02-03 18:15:37] 2026-02-03 17:15:37,596 | INFO     | all workflow threads have been joined
[2026-02-03 18:15:37] 2026-02-03 17:15:37,596 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 18:15:37] 2026-02-03 17:15:37,596 | INFO     | traces error code: 0
[2026-02-03 18:15:37] 2026-02-03 17:15:37,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 18:15:37] 2026-02-03 17:15:37,645 [wrapper] ==== pilot stdout END ====
[2026-02-03 18:15:37] 2026-02-03 17:15:37,647 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 18:15:37] 2026-02-03 17:15:37,650 [wrapper] pilotpid: 2751053
[2026-02-03 18:15:37] 2026-02-03 17:15:37,652 [wrapper] Pilot exit status: 0
[2026-02-03 18:15:37] 2026-02-03 17:15:37,659 [wrapper] pandaids: 6993667947
[2026-02-03 18:15:37] 2026-02-03 17:15:37,674 [wrapper] cleanup supervisor_pilot 2760534 2751054
[2026-02-03 18:15:37] 2026-02-03 17:15:37,677 [wrapper] Test setup, not cleaning
[2026-02-03 18:15:37] 2026-02-03 17:15:37,679 [wrapper] apfmon messages muted
[2026-02-03 18:15:37] 2026-02-03 17:15:37,681 [wrapper] ==== wrapper stdout END ====
[2026-02-03 18:15:37] 2026-02-03 17:15:37,683 [wrapper] ==== wrapper stderr END ====
[2026-02-03 18:15:37]  *** Error codes and diagnostics ***
[2026-02-03 18:15:37]     "exeErrorCode": 0,
[2026-02-03 18:15:37]     "exeErrorDiag": "",
[2026-02-03 18:15:37]     "pilotErrorCode": 0,
[2026-02-03 18:15:37]     "pilotErrorDiag": "",
[2026-02-03 18:15:37]  *** Listing of results directory ***
[2026-02-03 18:15:37] total 669556
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc    584422 Feb  3 01:37 pilot3.tar.gz
[2026-02-03 18:15:37] -rwx------ 1 boinc boinc     36322 Feb  3 01:38 runpilot2-wrapper.sh
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc      5111 Feb  3 01:39 queuedata.json
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc       100 Feb  3 16:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 18:15:37] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 16:49 run_atlas
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc       105 Feb  3 16:49 job.xml
[2026-02-03 18:15:37] -rw-r--r-- 2 boinc boinc 492362902 Feb  3 16:49 EVNT.48318016._000024.pool.root.1
[2026-02-03 18:15:37] -rw-r--r-- 2 boinc boinc    597759 Feb  3 16:49 input.tar.gz
[2026-02-03 18:15:37] -rw-r--r-- 2 boinc boinc     15845 Feb  3 16:49 start_atlas.sh
[2026-02-03 18:15:37] drwxrwx--x 2 boinc boinc      4096 Feb  3 16:49 shared
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc         0 Feb  3 16:49 boinc_setup_complete
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc      6448 Feb  3 16:49 init_data.xml
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc         0 Feb  3 16:49 boinc_lockfile
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc      2520 Feb  3 16:49 pandaJob.out
[2026-02-03 18:15:37] -rw------- 1 boinc boinc   1009258 Feb  3 16:49 agis_schedconf.cvmfs.json
[2026-02-03 18:15:37] -rw------- 1 boinc boinc   1511668 Feb  3 16:49 agis_ddmendpoints.agis.ALL.json
[2026-02-03 18:15:37] -rw------- 1 boinc boinc       419 Feb  3 16:49 workernode_map.json
[2026-02-03 18:15:37] drwx------ 5 boinc boinc      4096 Feb  3 16:49 pilot3
[2026-02-03 18:15:37] -rw------- 1 boinc boinc        95 Feb  3 18:14 pilot_heartbeat.json
[2026-02-03 18:15:37] -rw------- 1 boinc boinc 187238021 Feb  3 18:14 HITS.48318018._001224.pool.root.1
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc       530 Feb  3 18:15 boinc_task_state.xml
[2026-02-03 18:15:37] -rw------- 1 boinc boinc      1016 Feb  3 18:15 memory_monitor_summary.json
[2026-02-03 18:15:37] -rw------- 1 boinc boinc    293749 Feb  3 18:15 log.48318018._001224.job.log.tgz.1
[2026-02-03 18:15:37] -rw------- 1 boinc boinc      6301 Feb  3 18:15 heartbeat.json
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc      8192 Feb  3 18:15 boinc_mmap_file
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc        27 Feb  3 18:15 wrapper_checkpoint.txt
[2026-02-03 18:15:37] -rw------- 1 boinc boinc      4552 Feb  3 18:15 pilotlog.txt
[2026-02-03 18:15:37] -rw------- 1 boinc boinc    752206 Feb  3 18:15 log.48318018._001224.job.log.1
[2026-02-03 18:15:37] -rw------- 1 boinc boinc       357 Feb  3 18:15 output.list
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc       620 Feb  3 18:15 runtime_log
[2026-02-03 18:15:37] -rw------- 1 boinc boinc   1064960 Feb  3 18:15 result.tar.gz
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc      8916 Feb  3 18:15 runtime_log.err
[2026-02-03 18:15:37] -rw------- 1 boinc boinc       661 Feb  3 18:15 1lIMDmQcJ78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmtlTKDmty1WTm.diag
[2026-02-03 18:15:37] -rw-r--r-- 1 boinc boinc     12598 Feb  3 18:15 stderr.txt
[2026-02-03 18:15:37] HITS file was successfully produced:
[2026-02-03 18:15:37] -rw------- 1 boinc boinc 187238021 Feb  3 18:14 shared/HITS.pool.root.1
[2026-02-03 18:15:37]  *** Contents of shared directory: ***
[2026-02-03 18:15:37] total 665324
[2026-02-03 18:15:37] -rw-r--r-- 2 boinc boinc 492362902 Feb  3 16:49 ATLAS.root_0
[2026-02-03 18:15:37] -rw-r--r-- 2 boinc boinc    597759 Feb  3 16:49 input.tar.gz
[2026-02-03 18:15:37] -rw-r--r-- 2 boinc boinc     15845 Feb  3 16:49 start_atlas.sh
[2026-02-03 18:15:37] -rw------- 1 boinc boinc 187238021 Feb  3 18:14 HITS.pool.root.1
[2026-02-03 18:15:37] -rw------- 1 boinc boinc   1064960 Feb  3 18:15 result.tar.gz
18:15:39 (2747019): run_atlas exited; CPU time 14735.513121
18:15:39 (2747019): called boinc_finish(0)

</stderr_txt>
]]>

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