Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:59:45 (1486741): wrapper (7.7.26015): starting
15:59:45 (1486741): wrapper: running run_atlas (--nthreads 4)
[2026-02-03 15:59:45] Arguments: --nthreads 4
[2026-02-03 15:59:45] Threads: 4
[2026-02-03 15:59:45] Checking for CVMFS
[2026-02-03 15:59:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 15:59:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 15:59:46] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 15:59:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 15:59:46] 2.9.2.0 1309670 306 62532 155832 2 50 30677445 36864001 0 130560 0 154060 99.986 9651 15795 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-03 15:59:46] CVMFS is ok
[2026-02-03 15:59:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 15:59:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 15:59:46] Further information can be found at the LHC@home message board.
[2026-02-03 15:59:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 15:59:46] Checking for apptainer binary...
[2026-02-03 15:59:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 15:59:46] Running /usr/bin/apptainer --version
[2026-02-03 15:59:46] apptainer version 1.4.1-1.1
[2026-02-03 15:59:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 15:59:46] atlasA237
[2026-02-03 15:59:46] apptainer works
[2026-02-03 15:59:46] Set ATHENA_PROC_NUMBER=4
[2026-02-03 15:59:46] Set ATHENA_CORE_NUMBER=4
[2026-02-03 15:59:46] Starting ATLAS job with PandaID=6997546666
[2026-02-03 15:59:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 17:39:13]  *** The last 200 lines of the pilot log: ***
[2026-02-03 17:39:13] 2026-02-03 16:38:05,916 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 17:39:13] 2026-02-03 16:38:05,916 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 17:39:13] 2026-02-03 16:38:05,916 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 17:39:13] 2026-02-03 16:38:05,916 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 17:39:13] 2026-02-03 16:38:05,916 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 17:39:13] 2026-02-03 16:38:05,916 | INFO     | job 6997546666 has completed (purged errors)
[2026-02-03 17:39:13] 2026-02-03 16:38:05,916 | INFO     | overall cleanup function is called
[2026-02-03 17:39:13] 2026-02-03 16:38:06,923 | INFO     | --- collectZombieJob: --- 10, [1495792]
[2026-02-03 17:39:13] 2026-02-03 16:38:06,923 | INFO     | zombie collector waiting for pid 1495792
[2026-02-03 17:39:13] 2026-02-03 16:38:06,923 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 17:39:13] 2026-02-03 16:38:06,923 | INFO     | collected zombie processes
[2026-02-03 17:39:13] 2026-02-03 16:38:06,923 | INFO     | will attempt to kill all subprocesses of pid=1495792
[2026-02-03 17:39:13] 2026-02-03 16:38:06,988 | INFO     | process IDs to be killed: [1495792] (in reverse order)
[2026-02-03 17:39:13] 2026-02-03 16:38:07,027 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 17:39:13] 2026-02-03 16:38:07,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 17:39:13] 2026-02-03 16:38:07,030 | INFO     | did not find any defunct processes belonging to 1495792
[2026-02-03 17:39:13] 2026-02-03 16:38:07,032 | INFO     | did not find any defunct processes belonging to 1495792
[2026-02-03 17:39:13] 2026-02-03 16:38:07,032 | INFO     | ready for new job
[2026-02-03 17:39:13] 2026-02-03 16:38:07,032 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 17:39:13] 2026-02-03 16:38:07,033 | INFO     | **************************************
[2026-02-03 17:39:13] 2026-02-03 16:38:07,033 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 17:39:13] 2026-02-03 16:38:07,033 | INFO     | **************************************
[2026-02-03 17:39:13] 2026-02-03 16:38:07,033 | INFO     | 
[2026-02-03 17:39:13] 2026-02-03 16:38:07,033 | INFO     | architecture information:
[2026-02-03 17:39:13] 2026-02-03 16:38:07,034 | INFO     | executing command: cat /etc/os-release
[2026-02-03 17:39:13] 2026-02-03 16:38:07,047 | INFO     | cat /etc/os-release:
[2026-02-03 17:39:13] NAME="CentOS Linux"
[2026-02-03 17:39:13] VERSION="7 (Core)"
[2026-02-03 17:39:13] ID="centos"
[2026-02-03 17:39:13] ID_LIKE="rhel fedora"
[2026-02-03 17:39:13] VERSION_ID="7"
[2026-02-03 17:39:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 17:39:13] ANSI_COLOR="0;31"
[2026-02-03 17:39:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 17:39:13] HOME_URL="https://www.centos.org/"
[2026-02-03 17:39:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 17:39:13] 
[2026-02-03 17:39:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 17:39:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 17:39:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 17:39:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 17:39:13] 
[2026-02-03 17:39:13] 2026-02-03 16:38:07,047 | INFO     | **************************************
[2026-02-03 17:39:13] 2026-02-03 16:38:07,550 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-03 17:39:13] 2026-02-03 16:38:07,567 | INFO     | sufficient remaining disk space (323560144896 B)
[2026-02-03 17:39:13] 2026-02-03 16:38:07,567 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 17:39:13] 2026-02-03 16:38:07,567 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 17:39:13] 2026-02-03 16:38:07,567 | INFO     | update_server=False
[2026-02-03 17:39:13] 2026-02-03 16:38:07,567 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 17:39:13] 2026-02-03 16:38:07,567 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 17:39:13] 2026-02-03 16:38:07,567 | INFO     | aborting loop
[2026-02-03 17:39:13] 2026-02-03 16:38:07,568 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 17:39:13] 2026-02-03 16:38:08,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 17:39:13] 2026-02-03 16:38:08,409 | INFO     | all job control threads have been joined
[2026-02-03 17:39:13] 2026-02-03 16:38:08,424 | INFO     | all data control threads have been joined
[2026-02-03 17:39:13] 2026-02-03 16:38:08,573 | INFO     | [job] job monitor thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:08,573 | INFO     | [job] retrieve thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:08,574 | INFO     | [job] queue monitor thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:08,677 | INFO     | all payload control threads have been joined
[2026-02-03 17:39:13] 2026-02-03 16:38:08,769 | INFO     | [payload] failed_post thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:08,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 17:39:13] 2026-02-03 16:38:09,410 | INFO     | [job] control thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:09,430 | INFO     | [data] control thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:09,487 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:09,582 | INFO     | [job] validate thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:09,631 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:09,682 | INFO     | [payload] control thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:09,913 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:09,936 | INFO     | [data] copytool_in thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:09,936 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:10,024 | INFO     | [payload] validate_post thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:10,081 | INFO     | [data] copytool_out thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:12,959 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 17:39:13] 2026-02-03 16:38:37,548 | INFO     | PID=1491016 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 17:39:13] 2026-02-03 16:38:37,548 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 17:39:13] 2026-02-03 16:38:37,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 17:39:13] 2026-02-03 16:38:37,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 17:39:13] 2026-02-03 16:39:06,913 | INFO     | [monitor] cgroup control has ended
[2026-02-03 17:39:13] 2026-02-03 16:39:07,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140483606357824)>', '<ExcThread(monitor, started 140482734712576)>']
[2026-02-03 17:39:13] 2026-02-03 16:39:08,713 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 17:39:13] 2026-02-03 16:39:08,713 | INFO     | [monitor] control thread has ended
[2026-02-03 17:39:13] 2026-02-03 16:39:12,944 | INFO     | all workflow threads have been joined
[2026-02-03 17:39:13] 2026-02-03 16:39:12,945 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 17:39:13] 2026-02-03 16:39:12,945 | INFO     | traces error code: 0
[2026-02-03 17:39:13] 2026-02-03 16:39:12,945 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 17:39:13] 2026-02-03 16:39:13,016 [wrapper] ==== pilot stdout END ====
[2026-02-03 17:39:13] 2026-02-03 16:39:13,020 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 17:39:13] 2026-02-03 16:39:13,024 [wrapper] pilotpid: 1491016
[2026-02-03 17:39:13] 2026-02-03 16:39:13,028 [wrapper] Pilot exit status: 0
[2026-02-03 17:39:13] 2026-02-03 16:39:13,040 [wrapper] pandaids: 6997546666
[2026-02-03 17:39:13] 2026-02-03 16:39:13,066 [wrapper] cleanup supervisor_pilot 1534853 1491017
[2026-02-03 17:39:13] 2026-02-03 16:39:13,070 [wrapper] Test setup, not cleaning
[2026-02-03 17:39:13] 2026-02-03 16:39:13,074 [wrapper] apfmon messages muted
[2026-02-03 17:39:13] 2026-02-03 16:39:13,079 [wrapper] ==== wrapper stdout END ====
[2026-02-03 17:39:13] 2026-02-03 16:39:13,082 [wrapper] ==== wrapper stderr END ====
[2026-02-03 17:39:13]  *** Error codes and diagnostics ***
[2026-02-03 17:39:13]     "exeErrorCode": 0,
[2026-02-03 17:39:13]     "exeErrorDiag": "",
[2026-02-03 17:39:13]     "pilotErrorCode": 0,
[2026-02-03 17:39:13]     "pilotErrorDiag": "",
[2026-02-03 17:39:13]  *** Listing of results directory ***
[2026-02-03 17:39:13] total 890328
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc    584422 Feb  2 21:18 pilot3.tar.gz
[2026-02-03 17:39:13] -rwx------ 1 boinc boinc     36322 Feb  2 21:19 runpilot2-wrapper.sh
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc      5111 Feb  2 21:20 queuedata.json
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc       100 Feb  3 15:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 17:39:13] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 15:59 run_atlas
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc       105 Feb  3 15:59 job.xml
[2026-02-03 17:39:13] -rw-r--r-- 2 boinc boinc 650004864 Feb  3 15:59 EVNT.48431078._000152.pool.root.1
[2026-02-03 17:39:13] -rw-r--r-- 2 boinc boinc    597764 Feb  3 15:59 input.tar.gz
[2026-02-03 17:39:13] -rw-r--r-- 2 boinc boinc     15845 Feb  3 15:59 start_atlas.sh
[2026-02-03 17:39:13] drwxrwx--x 2 boinc boinc      4096 Feb  3 15:59 shared
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc         0 Feb  3 15:59 boinc_setup_complete
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc      6371 Feb  3 15:59 init_data.xml
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc         0 Feb  3 15:59 boinc_lockfile
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc      2557 Feb  3 15:59 pandaJob.out
[2026-02-03 17:39:13] -rw------- 1 boinc boinc   1009258 Feb  3 15:59 agis_schedconf.cvmfs.json
[2026-02-03 17:39:13] -rw------- 1 boinc boinc   1511668 Feb  3 15:59 agis_ddmendpoints.agis.ALL.json
[2026-02-03 17:39:13] -rw------- 1 boinc boinc       429 Feb  3 15:59 workernode_map.json
[2026-02-03 17:39:13] drwx------ 5 boinc boinc      4096 Feb  3 16:00 pilot3
[2026-02-03 17:39:13] -rw------- 1 boinc boinc 255507776 Feb  3 17:37 HITS.48431080._007951.pool.root.1
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc       530 Feb  3 17:37 boinc_task_state.xml
[2026-02-03 17:39:13] -rw------- 1 boinc boinc      1027 Feb  3 17:37 memory_monitor_summary.json
[2026-02-03 17:39:13] -rw------- 1 boinc boinc    277658 Feb  3 17:38 log.48431080._007951.job.log.tgz.1
[2026-02-03 17:39:13] -rw------- 1 boinc boinc      6323 Feb  3 17:38 heartbeat.json
[2026-02-03 17:39:13] -rw------- 1 boinc boinc        95 Feb  3 17:38 pilot_heartbeat.json
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc        27 Feb  3 17:38 wrapper_checkpoint.txt
[2026-02-03 17:39:13] -rw------- 1 boinc boinc      4748 Feb  3 17:39 pilotlog.txt
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc      8192 Feb  3 17:39 boinc_mmap_file
[2026-02-03 17:39:13] -rw------- 1 boinc boinc    851458 Feb  3 17:39 log.48431080._007951.job.log.1
[2026-02-03 17:39:13] -rw------- 1 boinc boinc       357 Feb  3 17:39 output.list
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc       620 Feb  3 17:39 runtime_log
[2026-02-03 17:39:13] -rw------- 1 boinc boinc   1146880 Feb  3 17:39 result.tar.gz
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc      8911 Feb  3 17:39 runtime_log.err
[2026-02-03 17:39:13] -rw------- 1 boinc boinc       660 Feb  3 17:39 ppwNDmSZF78n9Rq4apOajLDm4fhM0noT9bVooX4SDmK6SKDmUDtcPo.diag
[2026-02-03 17:39:13] -rw-r--r-- 1 boinc boinc     11312 Feb  3 17:39 stderr.txt
[2026-02-03 17:39:13] HITS file was successfully produced:
[2026-02-03 17:39:13] -rw------- 1 boinc boinc 255507776 Feb  3 17:37 shared/HITS.pool.root.1
[2026-02-03 17:39:13]  *** Contents of shared directory: ***
[2026-02-03 17:39:13] total 886020
[2026-02-03 17:39:13] -rw-r--r-- 2 boinc boinc 650004864 Feb  3 15:59 ATLAS.root_0
[2026-02-03 17:39:13] -rw-r--r-- 2 boinc boinc    597764 Feb  3 15:59 input.tar.gz
[2026-02-03 17:39:13] -rw-r--r-- 2 boinc boinc     15845 Feb  3 15:59 start_atlas.sh
[2026-02-03 17:39:13] -rw------- 1 boinc boinc 255507776 Feb  3 17:37 HITS.pool.root.1
[2026-02-03 17:39:13] -rw------- 1 boinc boinc   1146880 Feb  3 17:39 result.tar.gz
17:39:35 (1486741): run_atlas exited; CPU time 22414.671032
17:39:35 (1486741): called boinc_finish(0)

</stderr_txt>
]]>

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