Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:03:43 (30644): wrapper (7.7.26015): starting
14:03:43 (30644): wrapper: running run_atlas (--nthreads 8)
[2026-02-03 14:03:43] Arguments: --nthreads 8
[2026-02-03 14:03:43] Threads: 8
[2026-02-03 14:03:43] Checking for CVMFS
[2026-02-03 14:03:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 14:03:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 14:03:55] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 14:03:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 14:03:56] 2.13.3.0 30854 0 25580 155813 3 1 2445695 4096000 0 130560 0 0 0.000 1336 310 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://131.225.189.146:3126 1
[2026-02-03 14:03:56] CVMFS is ok
[2026-02-03 14:03:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 14:03:56] Checking for apptainer binary...
[2026-02-03 14:03:56] apptainer is not installed, using version from CVMFS
[2026-02-03 14:03:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 14:03:57] gp
[2026-02-03 14:03:57] apptainer works
[2026-02-03 14:03:57] Set ATHENA_PROC_NUMBER=8
[2026-02-03 14:03:57] Set ATHENA_CORE_NUMBER=8
[2026-02-03 14:03:57] Starting ATLAS job with PandaID=6993667498
[2026-02-03 14:03:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 16:48:06]  *** The last 200 lines of the pilot log: ***
[2026-02-03 16:48:06] 2026-02-03 05:47:30,960 | INFO     | mean x: 1770092763.5
[2026-02-03 16:48:06] 2026-02-03 05:47:30,960 | INFO     | mean y: 2513037.18125
[2026-02-03 16:48:06] 2026-02-03 05:47:30,960 | INFO     | intersect: -39334939986.186905
[2026-02-03 16:48:06] 2026-02-03 05:47:30,960 | INFO     | chi2: 2.5928994994731513
[2026-02-03 16:48:06] 2026-02-03 05:47:30,961 | INFO     | sum of square deviations: 1154663510.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,962 | INFO     | sum of deviations: 27392236965.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,962 | INFO     | mean x: 1770092611.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,962 | INFO     | mean y: 2511936.335483871
[2026-02-03 16:48:06] 2026-02-03 05:47:30,963 | INFO     | intersect: -41989631948.51592
[2026-02-03 16:48:06] 2026-02-03 05:47:30,963 | INFO     | chi2: 2.5971243780986186
[2026-02-03 16:48:06] 2026-02-03 05:47:30,963 | INFO     | current chi2=2.5971243780986186 (change=-0.162940315516499 %)
[2026-02-03 16:48:06] 2026-02-03 05:47:30,963 | INFO     | right removable region: 154
[2026-02-03 16:48:06] 2026-02-03 05:47:30,964 | INFO     | sum of square deviations: 1154663510.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,965 | INFO     | sum of deviations: -8646698515.999996
[2026-02-03 16:48:06] 2026-02-03 05:47:30,965 | INFO     | mean x: 1770092916.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,965 | INFO     | mean y: 2561561.6387096774
[2026-02-03 16:48:06] 2026-02-03 05:47:30,966 | INFO     | intersect: 13257903622.252808
[2026-02-03 16:48:06] 2026-02-03 05:47:30,966 | INFO     | chi2: 0.4025561608113995
[2026-02-03 16:48:06] 2026-02-03 05:47:30,966 | INFO     | current chi2=0.4025561608113995 (change=84.47467166030945 %)
[2026-02-03 16:48:06] 2026-02-03 05:47:30,967 | INFO     | sum of square deviations: 1046484737.5
[2026-02-03 16:48:06] 2026-02-03 05:47:30,968 | INFO     | sum of deviations: -12351731552.5
[2026-02-03 16:48:06] 2026-02-03 05:47:30,968 | INFO     | mean x: 1770093068.5
[2026-02-03 16:48:06] 2026-02-03 05:47:30,968 | INFO     | mean y: 2566489.8866666667
[2026-02-03 16:48:06] 2026-02-03 05:47:30,968 | INFO     | intersect: 20895097094.092438
[2026-02-03 16:48:06] 2026-02-03 05:47:30,969 | INFO     | chi2: 0.16381561987637902
[2026-02-03 16:48:06] 2026-02-03 05:47:30,969 | INFO     | current chi2=0.16381561987637902 (change=59.306145123654474 %)
[2026-02-03 16:48:06] 2026-02-03 05:47:30,969 | INFO     | sum of square deviations: 945282840.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,970 | INFO     | sum of deviations: -4359339929.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,970 | INFO     | mean x: 1770093221.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,971 | INFO     | mean y: 2554436.9655172415
[2026-02-03 16:48:06] 2026-02-03 05:47:30,971 | INFO     | intersect: 8165654125.052017
[2026-02-03 16:48:06] 2026-02-03 05:47:30,971 | INFO     | chi2: 0.09226735562170886
[2026-02-03 16:48:06] 2026-02-03 05:47:30,971 | INFO     | current chi2=0.09226735562170886 (change=43.67609407983377 %)
[2026-02-03 16:48:06] 2026-02-03 05:47:30,972 | INFO     | sum of square deviations: 850825255.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,973 | INFO     | sum of deviations: 2288352383.5
[2026-02-03 16:48:06] 2026-02-03 05:47:30,973 | INFO     | mean x: 1770093373.5
[2026-02-03 16:48:06] 2026-02-03 05:47:30,973 | INFO     | mean y: 2543783.85
[2026-02-03 16:48:06] 2026-02-03 05:47:30,973 | INFO     | intersect: -4758242718.974579
[2026-02-03 16:48:06] 2026-02-03 05:47:30,974 | INFO     | chi2: 0.0025386574123856124
[2026-02-03 16:48:06] 2026-02-03 05:47:30,974 | INFO     | current chi2=0.0025386574123856124 (change=97.24858548803115 %)
[2026-02-03 16:48:06] 2026-02-03 05:47:30,974 | INFO     | sum of square deviations: 762879420.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,975 | INFO     | sum of deviations: 1617628500.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,976 | INFO     | mean x: 1770093526.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,976 | INFO     | mean y: 2544946.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,976 | INFO     | intersect: -3750805400.4061084
[2026-02-03 16:48:06] 2026-02-03 05:47:30,976 | INFO     | chi2: 0.002166268013125008
[2026-02-03 16:48:06] 2026-02-03 05:47:30,977 | INFO     | current chi2=0.002166268013125008 (change=14.668753548383076 %)
[2026-02-03 16:48:06] 2026-02-03 05:47:30,977 | INFO     | left removable region: 50
[2026-02-03 16:48:06] 2026-02-03 05:47:30,977 | INFO     | sum of square deviations: 348769330.0
[2026-02-03 16:48:06] 2026-02-03 05:47:30,978 | INFO     | sum of deviations: -83206195.99999999
[2026-02-03 16:48:06] 2026-02-03 05:47:30,978 | INFO     | mean x: 1770094105.5
[2026-02-03 16:48:06] 2026-02-03 05:47:30,979 | INFO     | mean y: 2548707.076923077
[2026-02-03 16:48:06] 2026-02-03 05:47:30,979 | INFO     | intersect: 424841564.8826184
[2026-02-03 16:48:06] 2026-02-03 05:47:30,979 | INFO     | chi2: 0.001305615848711347
[2026-02-03 16:48:06] 2026-02-03 05:47:30,979 | INFO     | current memory leak: -0.24 B/s (using 104 data points, chi2=0.00)
[2026-02-03 16:48:06] 2026-02-03 05:47:30,980 | INFO     | could have reported an average CPU frequency of 1540 MHz (9 samples)
[2026-02-03 16:48:06] 2026-02-03 05:47:30,980 | INFO     | ..............................
[2026-02-03 16:48:06] 2026-02-03 05:47:30,981 | INFO     | . Timing measurements:
[2026-02-03 16:48:06] 2026-02-03 05:47:30,981 | INFO     | . get job = 0 s
[2026-02-03 16:48:06] 2026-02-03 05:47:30,981 | INFO     | . initial setup = 14 s
[2026-02-03 16:48:06] 2026-02-03 05:47:30,981 | INFO     | . payload setup = 11 s
[2026-02-03 16:48:06] 2026-02-03 05:47:30,981 | INFO     | . stage-in = 0 s
[2026-02-03 16:48:06] 2026-02-03 05:47:30,981 | INFO     | . payload execution = 9736 s
[2026-02-03 16:48:06] 2026-02-03 05:47:30,981 | INFO     | . stage-out = 0 s
[2026-02-03 16:48:06] 2026-02-03 05:47:30,982 | INFO     | . log creation = 0 s
[2026-02-03 16:48:06] 2026-02-03 05:47:30,982 | INFO     | ..............................
[2026-02-03 16:48:06] 2026-02-03 05:47:31,051 | INFO     | 
[2026-02-03 16:48:06] 2026-02-03 05:47:31,051 | INFO     | job summary report
[2026-02-03 16:48:06] 2026-02-03 05:47:31,051 | INFO     | --------------------------------------------------
[2026-02-03 16:48:06] 2026-02-03 05:47:31,052 | INFO     | PanDA job id: 6993667498
[2026-02-03 16:48:06] 2026-02-03 05:47:31,052 | INFO     | task id: 48318034
[2026-02-03 16:48:06] 2026-02-03 05:47:31,052 | INFO     | errors: (none)
[2026-02-03 16:48:06] 2026-02-03 05:47:31,052 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 16:48:06] 2026-02-03 05:47:31,052 | INFO     | pilot state: finished 
[2026-02-03 16:48:06] 2026-02-03 05:47:31,052 | INFO     | transexitcode: 0
[2026-02-03 16:48:06] 2026-02-03 05:47:31,052 | INFO     | exeerrorcode: 0
[2026-02-03 16:48:06] 2026-02-03 05:47:31,053 | INFO     | exeerrordiag: 
[2026-02-03 16:48:06] 2026-02-03 05:47:31,053 | INFO     | exitcode: 0
[2026-02-03 16:48:06] 2026-02-03 05:47:31,053 | INFO     | exitmsg: OK
[2026-02-03 16:48:06] 2026-02-03 05:47:31,053 | INFO     | cpuconsumptiontime: 70277 s
[2026-02-03 16:48:06] 2026-02-03 05:47:31,053 | INFO     | nevents: 400
[2026-02-03 16:48:06] 2026-02-03 05:47:31,053 | INFO     | neventsw: 0
[2026-02-03 16:48:06] 2026-02-03 05:47:31,053 | INFO     | pid: 39342
[2026-02-03 16:48:06] 2026-02-03 05:47:31,053 | INFO     | pgrp: 39342
[2026-02-03 16:48:06] 2026-02-03 05:47:31,054 | INFO     | corecount: 8
[2026-02-03 16:48:06] 2026-02-03 05:47:31,054 | INFO     | event service: False
[2026-02-03 16:48:06] 2026-02-03 05:47:31,054 | INFO     | sizes: {0: 2278035, 1: 2278241, 11: 2278269, 9752: 2315706, 9755: 2315964}
[2026-02-03 16:48:06] 2026-02-03 05:47:31,054 | INFO     | --------------------------------------------------
[2026-02-03 16:48:06] 2026-02-03 05:47:31,054 | INFO     | 
[2026-02-03 16:48:06] 2026-02-03 05:47:31,054 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-02-03 16:48:06] 2026-02-03 05:47:31,093 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,093 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,093 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,094 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,095 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 16:48:06] 2026-02-03 05:47:31,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,095 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 16:48:06] 2026-02-03 05:47:31,095 | INFO     | job 6993667498 has completed (purged errors)
[2026-02-03 16:48:06] 2026-02-03 05:47:31,095 | INFO     | overall cleanup function is called
[2026-02-03 16:48:06] 2026-02-03 05:47:32,103 | INFO     | --- collectZombieJob: --- 10, [39342]
[2026-02-03 16:48:06] 2026-02-03 05:47:32,103 | INFO     | zombie collector waiting for pid 39342
[2026-02-03 16:48:06] 2026-02-03 05:47:32,103 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 16:48:06] 2026-02-03 05:47:32,103 | INFO     | collected zombie processes
[2026-02-03 16:48:06] 2026-02-03 05:47:32,104 | INFO     | will attempt to kill all subprocesses of pid=39342
[2026-02-03 16:48:06] 2026-02-03 05:47:32,204 | INFO     | process IDs to be killed: [39342] (in reverse order)
[2026-02-03 16:48:06] 2026-02-03 05:47:32,273 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 16:48:06] 2026-02-03 05:47:32,274 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 16:48:06] 2026-02-03 05:47:32,278 | INFO     | did not find any defunct processes belonging to 39342
[2026-02-03 16:48:06] 2026-02-03 05:47:32,282 | INFO     | did not find any defunct processes belonging to 39342
[2026-02-03 16:48:06] 2026-02-03 05:47:32,283 | INFO     | ready for new job
[2026-02-03 16:48:06] 2026-02-03 05:47:32,283 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 16:48:06] 2026-02-03 05:47:32,286 | INFO     | **************************************
[2026-02-03 16:48:06] 2026-02-03 05:47:32,286 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 16:48:06] 2026-02-03 05:47:32,286 | INFO     | **************************************
[2026-02-03 16:48:06] 2026-02-03 05:47:32,286 | INFO     | 
[2026-02-03 16:48:06] 2026-02-03 05:47:32,287 | INFO     | architecture information:
[2026-02-03 16:48:06] 2026-02-03 05:47:32,288 | INFO     | executing command: cat /etc/os-release
[2026-02-03 16:48:06] 2026-02-03 05:47:32,312 | INFO     | cat /etc/os-release:
[2026-02-03 16:48:06] NAME="CentOS Linux"
[2026-02-03 16:48:06] VERSION="7 (Core)"
[2026-02-03 16:48:06] ID="centos"
[2026-02-03 16:48:06] ID_LIKE="rhel fedora"
[2026-02-03 16:48:06] VERSION_ID="7"
[2026-02-03 16:48:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 16:48:06] ANSI_COLOR="0;31"
[2026-02-03 16:48:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 16:48:06] HOME_URL="https://www.centos.org/"
[2026-02-03 16:48:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 16:48:06] 
[2026-02-03 16:48:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 16:48:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 16:48:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 16:48:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 16:48:06] 
[2026-02-03 16:48:06] 2026-02-03 05:47:32,313 | INFO     | **************************************
[2026-02-03 16:48:06] 2026-02-03 05:47:32,816 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-02-03 16:48:06] 2026-02-03 05:47:32,839 | INFO     | sufficient remaining disk space (26402095104 B)
[2026-02-03 16:48:06] 2026-02-03 05:47:32,840 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 16:48:06] 2026-02-03 05:47:32,840 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 16:48:06] 2026-02-03 05:47:32,840 | INFO     | update_server=False
[2026-02-03 16:48:06] 2026-02-03 05:47:32,840 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 16:48:06] 2026-02-03 05:47:32,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 16:48:06] 2026-02-03 05:47:32,841 | INFO     | aborting loop
[2026-02-03 16:48:06] 2026-02-03 05:47:32,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 16:48:06] 2026-02-03 05:47:32,841 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 16:48:06] 2026-02-03 05:47:32,988 | INFO     | all data control threads have been joined
[2026-02-03 16:48:06] 2026-02-03 05:47:33,645 | INFO     | all job control threads have been joined
[2026-02-03 16:48:06] 2026-02-03 05:47:33,842 | INFO     | [job] retrieve thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:33,846 | INFO     | [job] job monitor thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:33,847 | INFO     | [job] queue monitor thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:33,932 | INFO     | [payload] validate_post thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:33,994 | INFO     | [data] control thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:34,006 | INFO     | all payload control threads have been joined
[2026-02-03 16:48:06] 2026-02-03 05:47:34,120 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:34,126 | INFO     | [data] copytool_in thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:34,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 16:48:06] 2026-02-03 05:47:34,459 | INFO     | [job] validate thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:34,536 | INFO     | [payload] failed_post thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:34,646 | INFO     | [job] control thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:34,745 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:35,011 | INFO     | [payload] control thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:35,012 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:35,126 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:36,316 | INFO     | [data] copytool_out thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:47:36,847 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 16:48:06] 2026-02-03 05:48:00,175 | INFO     | [monitor] cgroup control has ended
[2026-02-03 16:48:06] 2026-02-03 05:48:01,433 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131865229223744)>', '<ExcThread(monitor, started 131864901682944)>']
[2026-02-03 16:48:06] 2026-02-03 05:48:03,890 | INFO     | PID=34930 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-03 16:48:06] 2026-02-03 05:48:03,891 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 16:48:06] 2026-02-03 05:48:03,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 16:48:06] 2026-02-03 05:48:03,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 16:48:06] 2026-02-03 05:48:03,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 16:48:06] 2026-02-03 05:48:03,891 | INFO     | [monitor] control thread has ended
[2026-02-03 16:48:06] 2026-02-03 05:48:06,439 | INFO     | all workflow threads have been joined
[2026-02-03 16:48:06] 2026-02-03 05:48:06,439 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 16:48:06] 2026-02-03 05:48:06,440 | INFO     | traces error code: 0
[2026-02-03 16:48:06] 2026-02-03 05:48:06,440 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 16:48:06] 2026-02-03 05:48:06,555 [wrapper] ==== pilot stdout END ====
[2026-02-03 16:48:06] 2026-02-03 05:48:06,559 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 16:48:06] 2026-02-03 05:48:06,563 [wrapper] pilotpid: 34930
[2026-02-03 16:48:06] 2026-02-03 05:48:06,568 [wrapper] Pilot exit status: 0
[2026-02-03 16:48:06] 2026-02-03 05:48:06,582 [wrapper] pandaids: 6993667498
[2026-02-03 16:48:06] 2026-02-03 05:48:06,631 [wrapper] cleanup supervisor_pilot   44394 34931
[2026-02-03 16:48:06] 2026-02-03 05:48:06,635 [wrapper] Test setup, not cleaning
[2026-02-03 16:48:06] 2026-02-03 05:48:06,640 [wrapper] apfmon messages muted
[2026-02-03 16:48:06] 2026-02-03 05:48:06,645 [wrapper] ==== wrapper stdout END ====
[2026-02-03 16:48:06] 2026-02-03 05:48:06,649 [wrapper] ==== wrapper stderr END ====
[2026-02-03 16:48:06]  *** Error codes and diagnostics ***
[2026-02-03 16:48:06]     "exeErrorCode": 0,
[2026-02-03 16:48:06]     "exeErrorDiag": "",
[2026-02-03 16:48:06]     "pilotErrorCode": 0,
[2026-02-03 16:48:06]     "pilotErrorDiag": "",
[2026-02-03 16:48:06]  *** Listing of results directory ***
[2026-02-03 16:48:06] total 676420
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc    584422 Feb  3 11:37 pilot3.tar.gz
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc      5111 Feb  3 11:37 queuedata.json
[2026-02-03 16:48:06] -rwx------ 1 boinc boinc     36322 Feb  3 11:37 runpilot2-wrapper.sh
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc       100 Feb  3 14:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 16:48:06] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 14:03 run_atlas
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc       105 Feb  3 14:03 job.xml
[2026-02-03 16:48:06] -rw-r--r-- 2 boinc boinc 501973477 Feb  3 14:03 EVNT.48318032._000117.pool.root.1
[2026-02-03 16:48:06] -rw-r--r-- 2 boinc boinc    597762 Feb  3 14:03 input.tar.gz
[2026-02-03 16:48:06] -rw-r--r-- 2 boinc boinc     15845 Feb  3 14:03 start_atlas.sh
[2026-02-03 16:48:06] drwxrwx--x 2 boinc boinc      4096 Feb  3 14:03 shared
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc         0 Feb  3 14:03 boinc_setup_complete
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc      9217 Feb  3 14:03 init_data.xml
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc         0 Feb  3 14:03 boinc_lockfile
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc      2535 Feb  3 14:03 pandaJob.out
[2026-02-03 16:48:06] -rw------- 1 boinc boinc   1009292 Feb  3 14:04 agis_schedconf.cvmfs.json
[2026-02-03 16:48:06] -rw------- 1 boinc boinc   1511668 Feb  3 14:04 agis_ddmendpoints.agis.ALL.json
[2026-02-03 16:48:06] -rw------- 1 boinc boinc       424 Feb  3 14:04 workernode_map.json
[2026-02-03 16:48:06] drwx------ 5 boinc boinc      4096 Feb  3 14:04 pilot3
[2026-02-03 16:48:06] -rw------- 1 boinc boinc 183240577 Feb  3 16:46 HITS.48318034._005934.pool.root.1
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc       530 Feb  3 16:47 boinc_task_state.xml
[2026-02-03 16:48:06] -rw------- 1 boinc boinc        95 Feb  3 16:47 pilot_heartbeat.json
[2026-02-03 16:48:06] -rw------- 1 boinc boinc      1032 Feb  3 16:47 memory_monitor_summary.json
[2026-02-03 16:48:06] -rw------- 1 boinc boinc    390435 Feb  3 16:47 log.48318034._005934.job.log.tgz.1
[2026-02-03 16:48:06] -rw------- 1 boinc boinc      6316 Feb  3 16:47 heartbeat.json
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc      8192 Feb  3 16:48 boinc_mmap_file
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc        27 Feb  3 16:48 wrapper_checkpoint.txt
[2026-02-03 16:48:06] -rw------- 1 boinc boinc      4749 Feb  3 16:48 pilotlog.txt
[2026-02-03 16:48:06] -rw------- 1 boinc boinc   1357266 Feb  3 16:48 log.48318034._005934.job.log.1
[2026-02-03 16:48:06] -rw------- 1 boinc boinc       357 Feb  3 16:48 output.list
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc       620 Feb  3 16:48 runtime_log
[2026-02-03 16:48:06] -rw------- 1 boinc boinc   1761280 Feb  3 16:48 result.tar.gz
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc      8863 Feb  3 16:48 runtime_log.err
[2026-02-03 16:48:06] -rw------- 1 boinc boinc       642 Feb  3 16:48 AhANDmSbJ78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmajTKDmEwVu5m.diag
[2026-02-03 16:48:06] -rw-r--r-- 1 boinc boinc     20501 Feb  3 16:48 stderr.txt
[2026-02-03 16:48:06] HITS file was successfully produced:
[2026-02-03 16:48:06] -rw------- 1 boinc boinc 183240577 Feb  3 16:46 shared/HITS.pool.root.1
[2026-02-03 16:48:06]  *** Contents of shared directory: ***
[2026-02-03 16:48:06] total 671488
[2026-02-03 16:48:06] -rw-r--r-- 2 boinc boinc 501973477 Feb  3 14:03 ATLAS.root_0
[2026-02-03 16:48:06] -rw-r--r-- 2 boinc boinc    597762 Feb  3 14:03 input.tar.gz
[2026-02-03 16:48:06] -rw-r--r-- 2 boinc boinc     15845 Feb  3 14:03 start_atlas.sh
[2026-02-03 16:48:06] -rw------- 1 boinc boinc 183240577 Feb  3 16:46 HITS.pool.root.1
[2026-02-03 16:48:06] -rw------- 1 boinc boinc   1761280 Feb  3 16:48 result.tar.gz
16:48:08 (30644): run_atlas exited; CPU time 70285.878481
16:48:08 (30644): called boinc_finish(0)

</stderr_txt>
]]>

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