Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:26:12 (539208): wrapper (7.7.26015): starting
20:26:12 (539208): wrapper: running run_atlas (--nthreads 4)
[2026-02-03 20:26:12] Arguments: --nthreads 4
[2026-02-03 20:26:12] Threads: 4
[2026-02-03 20:26:12] Checking for CVMFS
[2026-02-03 20:26:12] No cvmfs_config command found, will try listing directly
[2026-02-03 20:26:12] CVMFS is ok
[2026-02-03 20:26:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 20:26:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 20:26:12] Further information can be found at the LHC@home message board.
[2026-02-03 20:26:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 20:26:12] Checking for apptainer binary...
[2026-02-03 20:26:12] which: no apptainer in ((null))
[2026-02-03 20:26:12] apptainer is not installed, using version from CVMFS
[2026-02-03 20:26:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 20:26:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-02-03 20:26:13] apptainer works
[2026-02-03 20:26:13] Set ATHENA_PROC_NUMBER=4
[2026-02-03 20:26:13] Set ATHENA_CORE_NUMBER=4
[2026-02-03 20:26:13] Starting ATLAS job with PandaID=6997218847
[2026-02-03 20:26:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 23:56:30]  *** The last 200 lines of the pilot log: ***
[2026-02-03 23:56:30] 2026-02-03 22:33:53,297 | INFO     | preparing for final server update for job 6997218847 in state='finished'
[2026-02-03 23:56:30] 2026-02-03 22:33:53,297 | INFO     | reading metadata from: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6997218847/jobReport.json
[2026-02-03 23:56:30] 2026-02-03 22:33:53,300 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot32/slots/0/workernode_map.json
[2026-02-03 23:56:30] 2026-02-03 22:33:53,300 | INFO     | this job has now completed (state=finished)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,301 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,301 | INFO     | log transfer has been attempted: DONE
[2026-02-03 23:56:30] 2026-02-03 22:33:53,301 | INFO     | job 6997218847 has finished - writing final server update
[2026-02-03 23:56:30] 2026-02-03 22:33:53,301 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_331631/.job.ad'
[2026-02-03 23:56:30] 2026-02-03 22:33:53,301 | INFO     | total number of processed events: 400 (read)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,310 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6997218847/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,311 | INFO     | extracted standard info from prmon json
[2026-02-03 23:56:30] 2026-02-03 22:33:53,311 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 23:56:30] 2026-02-03 22:33:53,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 23:56:30] 2026-02-03 22:33:53,312 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 23:56:30] 2026-02-03 22:33:53,312 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 23:56:30] 2026-02-03 22:33:53,316 | INFO     | fitting pss+swap vs Time
[2026-02-03 23:56:30] 2026-02-03 22:33:53,316 | INFO     | sum of square deviations: 1931608310.0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,318 | INFO     | sum of deviations: -49831124907.0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,318 | INFO     | mean x: 1770152390.5
[2026-02-03 23:56:30] 2026-02-03 22:33:53,318 | INFO     | mean y: 2429444.304347826
[2026-02-03 23:56:30] 2026-02-03 22:33:53,318 | INFO     | intersect: 45668356857.62663
[2026-02-03 23:56:30] 2026-02-03 22:33:53,319 | INFO     | chi2: 1.661580267465951
[2026-02-03 23:56:30] 2026-02-03 22:33:53,319 | INFO     | sum of square deviations: 1778377530.0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,320 | INFO     | sum of deviations: -47731072539.0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,321 | INFO     | mean x: 1770152238.0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,321 | INFO     | mean y: 2431534.849162011
[2026-02-03 23:56:30] 2026-02-03 22:33:53,321 | INFO     | intersect: 47512739920.859406
[2026-02-03 23:56:30] 2026-02-03 22:33:53,321 | INFO     | chi2: 1.6532959775576788
[2026-02-03 23:56:30] 2026-02-03 22:33:53,321 | INFO     | current chi2=1.6532959775576788 (change=0.4985789775239971 %)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,322 | INFO     | right removable region: 178
[2026-02-03 23:56:30] 2026-02-03 22:33:53,322 | INFO     | sum of square deviations: 1778377530.0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,323 | INFO     | sum of deviations: -70257941513.0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,323 | INFO     | mean x: 1770152543.0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,324 | INFO     | mean y: 2449415.5754189943
[2026-02-03 23:56:30] 2026-02-03 22:33:53,324 | INFO     | intersect: 69935448307.65108
[2026-02-03 23:56:30] 2026-02-03 22:33:53,324 | INFO     | chi2: 0.3936789233281704
[2026-02-03 23:56:30] 2026-02-03 22:33:53,324 | INFO     | current chi2=0.3936789233281704 (change=76.30695723604352 %)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,325 | INFO     | sum of square deviations: 1633472487.5
[2026-02-03 23:56:30] 2026-02-03 22:33:53,326 | INFO     | sum of deviations: -63810510004.499985
[2026-02-03 23:56:30] 2026-02-03 22:33:53,326 | INFO     | mean x: 1770152695.5
[2026-02-03 23:56:30] 2026-02-03 22:33:53,326 | INFO     | mean y: 2442607.706896552
[2026-02-03 23:56:30] 2026-02-03 22:33:53,326 | INFO     | intersect: 69152273504.81
[2026-02-03 23:56:30] 2026-02-03 22:33:53,327 | INFO     | chi2: 0.3904229277259427
[2026-02-03 23:56:30] 2026-02-03 22:33:53,327 | INFO     | current chi2=0.3904229277259427 (change=0.8270688140227088 %)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,327 | INFO     | left removable region: 20
[2026-02-03 23:56:30] 2026-02-03 22:33:53,327 | INFO     | sum of square deviations: 1223016419.5
[2026-02-03 23:56:30] 2026-02-03 22:33:53,328 | INFO     | sum of deviations: -45937051589.5
[2026-02-03 23:56:30] 2026-02-03 22:33:53,328 | INFO     | mean x: 1770152817.5
[2026-02-03 23:56:30] 2026-02-03 22:33:53,329 | INFO     | mean y: 2427165.5
[2026-02-03 23:56:30] 2026-02-03 22:33:53,329 | INFO     | intersect: 66490170095.42742
[2026-02-03 23:56:30] 2026-02-03 22:33:53,329 | INFO     | chi2: 0.3595843611545477
[2026-02-03 23:56:30] 2026-02-03 22:33:53,329 | INFO     | current memory leak: -37.56 B/s (using 158 data points, chi2=0.36)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,330 | INFO     | could have reported an average CPU frequency of 2614 MHz (10 samples)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,330 | INFO     | ..............................
[2026-02-03 23:56:30] 2026-02-03 22:33:53,330 | INFO     | . Timing measurements:
[2026-02-03 23:56:30] 2026-02-03 22:33:53,330 | INFO     | . get job = 0 s
[2026-02-03 23:56:30] 2026-02-03 22:33:53,331 | INFO     | . initial setup = 5 s
[2026-02-03 23:56:30] 2026-02-03 22:33:53,331 | INFO     | . payload setup = 5 s
[2026-02-03 23:56:30] 2026-02-03 22:33:53,331 | INFO     | . stage-in = 0 s
[2026-02-03 23:56:30] 2026-02-03 22:33:53,331 | INFO     | . payload execution = 11219 s
[2026-02-03 23:56:30] 2026-02-03 22:33:53,331 | INFO     | . stage-out = 1 s
[2026-02-03 23:56:30] 2026-02-03 22:33:53,331 | INFO     | . log creation = 0 s
[2026-02-03 23:56:30] 2026-02-03 22:33:53,331 | INFO     | ..............................
[2026-02-03 23:56:30] 2026-02-03 22:33:53,440 | INFO     | 
[2026-02-03 23:56:30] 2026-02-03 22:33:53,440 | INFO     | job summary report
[2026-02-03 23:56:30] 2026-02-03 22:33:53,440 | INFO     | --------------------------------------------------
[2026-02-03 23:56:30] 2026-02-03 22:33:53,440 | INFO     | PanDA job id: 6997218847
[2026-02-03 23:56:30] 2026-02-03 22:33:53,440 | INFO     | task id: 48317931
[2026-02-03 23:56:30] 2026-02-03 22:33:53,440 | INFO     | errors: (none)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,441 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 23:56:30] 2026-02-03 22:33:53,441 | INFO     | pilot state: finished 
[2026-02-03 23:56:30] 2026-02-03 22:33:53,441 | INFO     | transexitcode: 0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,441 | INFO     | exeerrorcode: 0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,441 | INFO     | exeerrordiag: 
[2026-02-03 23:56:30] 2026-02-03 22:33:53,441 | INFO     | exitcode: 0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,441 | INFO     | exitmsg: OK
[2026-02-03 23:56:30] 2026-02-03 22:33:53,441 | INFO     | cpuconsumptiontime: 42720 s
[2026-02-03 23:56:30] 2026-02-03 22:33:53,442 | INFO     | nevents: 400
[2026-02-03 23:56:30] 2026-02-03 22:33:53,442 | INFO     | neventsw: 0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,442 | INFO     | pid: 547891
[2026-02-03 23:56:30] 2026-02-03 22:33:53,442 | INFO     | pgrp: 547891
[2026-02-03 23:56:30] 2026-02-03 22:33:53,442 | INFO     | corecount: 4
[2026-02-03 23:56:30] 2026-02-03 22:33:53,442 | INFO     | event service: False
[2026-02-03 23:56:30] 2026-02-03 22:33:53,442 | INFO     | sizes: {0: 2278020, 1: 2278226, 11: 2278254, 11228: 2307557, 11229: 2307556, 11230: 2316816, 11233: 2316982}
[2026-02-03 23:56:30] 2026-02-03 22:33:53,442 | INFO     | --------------------------------------------------
[2026-02-03 23:56:30] 2026-02-03 22:33:53,443 | INFO     | 
[2026-02-03 23:56:30] 2026-02-03 22:33:53,443 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2026-02-03 23:56:30] 2026-02-03 22:33:53,464 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,464 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,464 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,465 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,465 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,465 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,465 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,465 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,465 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,466 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,466 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,466 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,466 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,466 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,466 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,466 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,467 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,467 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,467 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,467 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 23:56:30] 2026-02-03 22:33:53,467 | INFO     | job 6997218847 has completed (purged errors)
[2026-02-03 23:56:30] 2026-02-03 22:33:53,467 | INFO     | overall cleanup function is called
[2026-02-03 23:56:30] 2026-02-03 22:33:54,472 | INFO     | --- collectZombieJob: --- 10, [547891]
[2026-02-03 23:56:30] 2026-02-03 22:33:54,473 | INFO     | zombie collector waiting for pid 547891
[2026-02-03 23:56:30] 2026-02-03 22:33:54,473 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 23:56:30] 2026-02-03 22:33:54,473 | INFO     | collected zombie processes
[2026-02-03 23:56:30] 2026-02-03 22:33:54,473 | INFO     | will attempt to kill all subprocesses of pid=547891
[2026-02-03 23:56:30] 2026-02-03 22:33:54,779 | INFO     | process IDs to be killed: [547891] (in reverse order)
[2026-02-03 23:56:30] 2026-02-03 22:33:54,864 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 23:56:30] 2026-02-03 22:33:54,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 23:56:30] 2026-02-03 22:33:54,873 | INFO     | did not find any defunct processes belonging to 547891
[2026-02-03 23:56:30] 2026-02-03 22:33:54,881 | INFO     | did not find any defunct processes belonging to 547891
[2026-02-03 23:56:30] 2026-02-03 22:33:54,882 | INFO     | ready for new job
[2026-02-03 23:56:30] 2026-02-03 22:33:54,882 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 23:56:30] 2026-02-03 22:33:54,884 | INFO     | **************************************
[2026-02-03 23:56:30] 2026-02-03 22:33:54,884 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 23:56:30] 2026-02-03 22:33:54,884 | INFO     | **************************************
[2026-02-03 23:56:30] 2026-02-03 22:33:54,884 | INFO     | 
[2026-02-03 23:56:30] 2026-02-03 22:33:54,887 | INFO     | architecture information:
[2026-02-03 23:56:30] 2026-02-03 22:33:54,887 | INFO     | executing command: cat /etc/os-release
[2026-02-03 23:56:30] 2026-02-03 22:33:54,903 | INFO     | cat /etc/os-release:
[2026-02-03 23:56:30] NAME="CentOS Linux"
[2026-02-03 23:56:30] VERSION="7 (Core)"
[2026-02-03 23:56:30] ID="centos"
[2026-02-03 23:56:30] ID_LIKE="rhel fedora"
[2026-02-03 23:56:30] VERSION_ID="7"
[2026-02-03 23:56:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 23:56:30] ANSI_COLOR="0;31"
[2026-02-03 23:56:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 23:56:30] HOME_URL="https://www.centos.org/"
[2026-02-03 23:56:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 23:56:30] 
[2026-02-03 23:56:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 23:56:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 23:56:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 23:56:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 23:56:30] 
[2026-02-03 23:56:30] 2026-02-03 22:33:54,904 | INFO     | **************************************
[2026-02-03 23:56:30] 2026-02-03 22:33:55,407 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2026-02-03 23:56:30] 2026-02-03 22:33:55,422 | INFO     | sufficient remaining disk space (1663196725248 B)
[2026-02-03 23:56:30] 2026-02-03 22:33:55,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 23:56:30] 2026-02-03 22:33:55,423 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 23:56:30] 2026-02-03 22:33:55,423 | INFO     | update_server=False
[2026-02-03 23:56:30] 2026-02-03 22:33:55,423 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 23:56:30] 2026-02-03 22:33:55,423 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 23:56:30] 2026-02-03 22:33:55,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 23:56:30] 2026-02-03 22:33:55,776 | INFO     | all payload control threads have been joined
[2026-02-03 23:56:30] 2026-02-03 22:33:55,868 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-03 23:56:30] 2026-02-03 22:33:55,868 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-03 23:56:30] 2026-02-03 22:33:55,868 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 23:56:30] 2026-02-03 22:33:55,868 | INFO     | will abort loop
[2026-02-03 23:56:30] 2026-02-03 22:33:56,077 | INFO     | all data control threads have been joined
[2026-02-03 23:56:30] 2026-02-03 22:33:56,317 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 23:56:30] 2026-02-03 22:33:56,378 | INFO     | all job control threads have been joined
[2026-02-03 23:56:30] 2026-02-03 22:33:56,424 | INFO     | [job] retrieve thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:56,429 | INFO     | [job] queue monitor thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:56,474 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:56,742 | INFO     | [data] copytool_in thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:56,777 | INFO     | [payload] control thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:56,874 | INFO     | [job] job monitor thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:57,064 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:57,082 | INFO     | [data] control thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:57,315 | INFO     | [job] validate thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:57,383 | INFO     | [job] control thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:57,476 | INFO     | [payload] failed_post thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:57,561 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:57,716 | INFO     | [data] copytool_out thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:57,891 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:33:57,976 | INFO     | [payload] validate_post thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:34:00,323 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 23:56:30] 2026-02-03 22:34:25,726 | INFO     | PID=543234 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-03 23:56:30] 2026-02-03 22:34:25,726 | INFO     | .. there are 5 such processes running
[2026-02-03 23:56:30] 2026-02-03 22:34:25,727 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 23:56:30] 2026-02-03 22:34:25,727 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 23:56:30] 2026-02-03 22:34:25,727 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 23:56:30] 2026-02-03 22:34:45,419 | INFO     | [monitor] cgroup control has ended
[2026-02-03 23:56:30] 2026-02-03 22:34:47,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23225791297344)>', '<ExcThread(monitor, started 23225542371072)>']
[2026-02-03 23:56:30] 2026-02-03 22:34:47,825 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 23:56:30] 2026-02-03 22:34:47,825 | INFO     | [monitor] control thread has ended
[2026-02-03 23:56:30] 2026-02-03 22:34:52,118 | INFO     | all workflow threads have been joined
[2026-02-03 23:56:30] 2026-02-03 22:34:52,118 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 23:56:30] 2026-02-03 22:34:52,118 | INFO     | traces error code: 0
[2026-02-03 23:56:30] 2026-02-03 22:34:52,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 23:56:30] 2026-02-03 22:34:52,253 [wrapper] ==== pilot stdout END ====
[2026-02-03 23:56:30] 2026-02-03 22:34:52,256 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 23:56:30] 2026-02-03 22:34:52,258 [wrapper] pilotpid: 543234
[2026-02-03 23:56:30] 2026-02-03 22:34:52,261 [wrapper] Pilot exit status: 0
[2026-02-03 23:56:30] 2026-02-03 22:34:52,272 [wrapper] pandaids: 6997218847
[2026-02-03 23:56:30] 2026-02-03 22:34:52,325 [wrapper] cleanup supervisor_pilot  675759 543235
[2026-02-03 23:56:30] 2026-02-03 22:34:52,328 [wrapper] Test setup, not cleaning
[2026-02-03 23:56:30] 2026-02-03 22:34:52,331 [wrapper] apfmon messages muted
[2026-02-03 23:56:30] 2026-02-03 22:34:52,333 [wrapper] ==== wrapper stdout END ====
[2026-02-03 23:56:30] 2026-02-03 22:34:52,336 [wrapper] ==== wrapper stderr END ====
[2026-02-03 23:56:30]  *** Error codes and diagnostics ***
[2026-02-03 23:56:30]     "exeErrorCode": 0,
[2026-02-03 23:56:30]     "exeErrorDiag": "",
[2026-02-03 23:56:30]     "pilotErrorCode": 0,
[2026-02-03 23:56:30]     "pilotErrorDiag": "",
[2026-02-03 23:56:30]  *** Listing of results directory ***
[2026-02-03 23:56:30] total 667444
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc    584422 Feb  2 18:56 pilot3.tar.gz
[2026-02-03 23:56:30] -rwx------ 1 boinc boinc     36322 Feb  2 18:59 runpilot2-wrapper.sh
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc      5111 Feb  2 19:01 queuedata.json
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc       100 Feb  3 20:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 23:56:30] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 20:26 run_atlas
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc       105 Feb  3 20:26 job.xml
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc      6424 Feb  3 20:26 init_data.xml
[2026-02-03 23:56:30] -rw-r--r-- 2 boinc boinc 494064391 Feb  3 20:26 EVNT.48317929._000282.pool.root.1
[2026-02-03 23:56:30] -rw-r--r-- 2 boinc boinc     15845 Feb  3 20:26 start_atlas.sh
[2026-02-03 23:56:30] drwxrwx--x 2 boinc boinc      4096 Feb  3 20:26 shared
[2026-02-03 23:56:30] -rw-r--r-- 2 boinc boinc    597755 Feb  3 20:26 input.tar.gz
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc         0 Feb  3 20:26 boinc_lockfile
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc      2513 Feb  3 20:26 pandaJob.out
[2026-02-03 23:56:30] -rw------- 1 boinc boinc   1009252 Feb  3 20:26 agis_schedconf.cvmfs.json
[2026-02-03 23:56:30] -rw------- 1 boinc boinc       454 Feb  3 20:26 workernode_map.json
[2026-02-03 23:56:30] drwx------ 5 boinc boinc      4096 Feb  3 20:26 pilot3
[2026-02-03 23:56:30] -rw------- 1 boinc boinc 181488248 Feb  3 23:33 HITS.48317931._015416.pool.root.1
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc       529 Feb  3 23:33 boinc_task_state.xml
[2026-02-03 23:56:30] -rw------- 1 boinc boinc      1039 Feb  3 23:33 memory_monitor_summary.json
[2026-02-03 23:56:30] -rw------- 1 boinc boinc   1511668 Feb  3 23:33 agis_ddmendpoints.agis.ALL.json
[2026-02-03 23:56:30] -rw------- 1 boinc boinc    381168 Feb  3 23:33 log.48317931._015416.job.log.tgz.1
[2026-02-03 23:56:30] -rw------- 1 boinc boinc      6417 Feb  3 23:33 heartbeat.json
[2026-02-03 23:56:30] -rw------- 1 boinc boinc        95 Feb  3 23:34 pilot_heartbeat.json
[2026-02-03 23:56:30] -rw------- 1 boinc boinc      5015 Feb  3 23:34 pilotlog.txt
[2026-02-03 23:56:30] -rw------- 1 boinc boinc   1602016 Feb  3 23:34 log.48317931._015416.job.log.1
[2026-02-03 23:56:30] -rw------- 1 boinc boinc       357 Feb  3 23:34 output.list
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc       620 Feb  3 23:34 runtime_log
[2026-02-03 23:56:30] -rw------- 1 boinc boinc   1996800 Feb  3 23:34 result.tar.gz
[2026-02-03 23:56:30] -rw------- 1 boinc boinc       665 Feb  3 23:34 uWwNDmfND78n9Rq4apOajLDm4fhM0noT9bVooX4SDmDzSKDmkcPbum.diag
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc      9205 Feb  3 23:34 runtime_log.err
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc        26 Feb  3 23:56 wrapper_checkpoint.txt
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc      8192 Feb  3 23:56 boinc_mmap_file
[2026-02-03 23:56:30] -rw-r--r-- 1 boinc boinc     21114 Feb  3 23:56 stderr.txt
[2026-02-03 23:56:30] HITS file was successfully produced:
[2026-02-03 23:56:30] -rw------- 1 boinc boinc 181488248 Feb  3 23:33 shared/HITS.pool.root.1
[2026-02-03 23:56:30]  *** Contents of shared directory: ***
[2026-02-03 23:56:30] total 662284
[2026-02-03 23:56:30] -rw-r--r-- 2 boinc boinc 494064391 Feb  3 20:26 ATLAS.root_0
[2026-02-03 23:56:30] -rw-r--r-- 2 boinc boinc     15845 Feb  3 20:26 start_atlas.sh
[2026-02-03 23:56:30] -rw-r--r-- 2 boinc boinc    597755 Feb  3 20:26 input.tar.gz
[2026-02-03 23:56:30] -rw------- 1 boinc boinc 181488248 Feb  3 23:33 HITS.pool.root.1
[2026-02-03 23:56:30] -rw------- 1 boinc boinc   1996800 Feb  3 23:34 result.tar.gz
23:56:32 (539208): run_atlas exited; CPU time 43134.154428
23:56:32 (539208): called boinc_finish(0)

</stderr_txt>
]]>

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