Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:17:48 (1306464): wrapper (7.7.26015): starting
12:17:48 (1306464): wrapper: running run_atlas (--nthreads 3)
[2026-02-03 12:17:48] Arguments: --nthreads 3
[2026-02-03 12:17:48] Threads: 3
[2026-02-03 12:17:48] Checking for CVMFS
[2026-02-03 12:17:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 12:17:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 12:17:49] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 12:17:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 12:17:49] 2.9.2.0 1077466 1369 73752 155828 2 49 25475306 36864001 0 130560 0 595639 99.982 57401 16696 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-03 12:17:49] CVMFS is ok
[2026-02-03 12:17:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 12:17:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 12:17:49] Further information can be found at the LHC@home message board.
[2026-02-03 12:17:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 12:17:49] Checking for apptainer binary...
[2026-02-03 12:17:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 12:17:49] Running /usr/bin/apptainer --version
[2026-02-03 12:17:49] apptainer version 1.4.1-1.1
[2026-02-03 12:17:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 12:17:49] magicA246a
[2026-02-03 12:17:49] apptainer works
[2026-02-03 12:17:49] Set ATHENA_PROC_NUMBER=3
[2026-02-03 12:17:49] Set ATHENA_CORE_NUMBER=3
[2026-02-03 12:17:49] Starting ATLAS job with PandaID=6997426969
[2026-02-03 12:17:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 14:10:12]  *** The last 200 lines of the pilot log: ***
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,862 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 14:10:12] 2026-02-03 13:09:25,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,862 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 14:10:12] 2026-02-03 13:09:25,862 | INFO     | job 6997426969 has completed (purged errors)
[2026-02-03 14:10:12] 2026-02-03 13:09:25,862 | INFO     | overall cleanup function is called
[2026-02-03 14:10:12] 2026-02-03 13:09:26,868 | INFO     | --- collectZombieJob: --- 10, [1314934]
[2026-02-03 14:10:12] 2026-02-03 13:09:26,868 | INFO     | zombie collector waiting for pid 1314934
[2026-02-03 14:10:12] 2026-02-03 13:09:26,868 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 14:10:12] 2026-02-03 13:09:26,868 | INFO     | collected zombie processes
[2026-02-03 14:10:12] 2026-02-03 13:09:26,869 | INFO     | will attempt to kill all subprocesses of pid=1314934
[2026-02-03 14:10:12] 2026-02-03 13:09:26,925 | INFO     | process IDs to be killed: [1314934] (in reverse order)
[2026-02-03 14:10:12] 2026-02-03 13:09:26,954 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 14:10:12] 2026-02-03 13:09:26,954 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 14:10:12] 2026-02-03 13:09:26,956 | INFO     | did not find any defunct processes belonging to 1314934
[2026-02-03 14:10:12] 2026-02-03 13:09:26,958 | INFO     | did not find any defunct processes belonging to 1314934
[2026-02-03 14:10:12] 2026-02-03 13:09:26,958 | INFO     | ready for new job
[2026-02-03 14:10:12] 2026-02-03 13:09:26,958 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 14:10:12] 2026-02-03 13:09:26,959 | INFO     | **************************************
[2026-02-03 14:10:12] 2026-02-03 13:09:26,959 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 14:10:12] 2026-02-03 13:09:26,959 | INFO     | **************************************
[2026-02-03 14:10:12] 2026-02-03 13:09:26,959 | INFO     | 
[2026-02-03 14:10:12] 2026-02-03 13:09:26,959 | INFO     | architecture information:
[2026-02-03 14:10:12] 2026-02-03 13:09:26,959 | INFO     | executing command: cat /etc/os-release
[2026-02-03 14:10:12] 2026-02-03 13:09:26,968 | INFO     | cat /etc/os-release:
[2026-02-03 14:10:12] NAME="CentOS Linux"
[2026-02-03 14:10:12] VERSION="7 (Core)"
[2026-02-03 14:10:12] ID="centos"
[2026-02-03 14:10:12] ID_LIKE="rhel fedora"
[2026-02-03 14:10:12] VERSION_ID="7"
[2026-02-03 14:10:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 14:10:12] ANSI_COLOR="0;31"
[2026-02-03 14:10:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 14:10:12] HOME_URL="https://www.centos.org/"
[2026-02-03 14:10:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 14:10:12] 
[2026-02-03 14:10:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 14:10:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 14:10:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 14:10:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 14:10:12] 
[2026-02-03 14:10:12] 2026-02-03 13:09:26,968 | INFO     | **************************************
[2026-02-03 14:10:12] 2026-02-03 13:09:27,472 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-03 14:10:12] 2026-02-03 13:09:27,484 | INFO     | sufficient remaining disk space (275511246848 B)
[2026-02-03 14:10:12] 2026-02-03 13:09:27,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 14:10:12] 2026-02-03 13:09:27,484 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 14:10:12] 2026-02-03 13:09:27,484 | INFO     | update_server=False
[2026-02-03 14:10:12] 2026-02-03 13:09:27,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 14:10:12] 2026-02-03 13:09:27,484 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-03 14:10:12] 2026-02-03 13:09:27,485 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 14:10:12] 2026-02-03 13:09:27,485 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 14:10:12] 2026-02-03 13:09:27,485 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 14:10:12] 2026-02-03 13:09:27,485 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 14:10:12] 2026-02-03 13:09:27,721 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-03 14:10:12] 2026-02-03 13:09:27,721 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-03 14:10:12] 2026-02-03 13:09:27,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 14:10:12] 2026-02-03 13:09:27,722 | INFO     | will abort loop
[2026-02-03 14:10:12] 2026-02-03 13:09:27,849 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 14:10:12] 2026-02-03 13:09:28,043 | INFO     | all data control threads have been joined
[2026-02-03 14:10:12] 2026-02-03 13:09:28,176 | INFO     | all job control threads have been joined
[2026-02-03 14:10:12] 2026-02-03 13:09:28,490 | INFO     | [job] retrieve thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:28,490 | INFO     | [job] queue monitor thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:28,727 | INFO     | [job] job monitor thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:28,806 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:28,870 | INFO     | all payload control threads have been joined
[2026-02-03 14:10:12] 2026-02-03 13:09:28,976 | INFO     | [payload] failed_post thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:29,049 | INFO     | [data] control thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:29,181 | INFO     | [job] control thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:29,226 | INFO     | [job] validate thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:29,244 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 14:10:12] 2026-02-03 13:09:29,299 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:29,308 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:29,421 | INFO     | [data] copytool_in thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:29,425 | INFO     | [payload] validate_post thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:29,854 | INFO     | [data] copytool_out thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:29,875 | INFO     | [payload] control thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:33,250 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:09:37,764 | INFO     | job.realtimelogging is not enabled
[2026-02-03 14:10:12] 2026-02-03 13:09:38,769 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 14:10:12] 2026-02-03 13:10:05,495 | INFO     | [monitor] cgroup control has ended
[2026-02-03 14:10:12] 2026-02-03 13:10:07,008 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140157801531200)>', '<ExcThread(monitor, started 140157290260224)>']
[2026-02-03 14:10:12] 2026-02-03 13:10:07,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 14:10:12] 2026-02-03 13:10:07,672 | INFO     | [monitor] control thread has ended
[2026-02-03 14:10:12] 2026-02-03 13:10:12,033 | INFO     | all workflow threads have been joined
[2026-02-03 14:10:12] 2026-02-03 13:10:12,033 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 14:10:12] 2026-02-03 13:10:12,034 | INFO     | traces error code: 0
[2026-02-03 14:10:12] 2026-02-03 13:10:12,034 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 14:10:12] 2026-02-03 13:10:12,089 [wrapper] ==== pilot stdout END ====
[2026-02-03 14:10:12] 2026-02-03 13:10:12,092 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 14:10:12] 2026-02-03 13:10:12,094 [wrapper] pilotpid: 1310504
[2026-02-03 14:10:12] 2026-02-03 13:10:12,097 [wrapper] Pilot exit status: 0
[2026-02-03 14:10:12] 2026-02-03 13:10:12,104 [wrapper] pandaids: 6997426969
[2026-02-03 14:10:12] 2026-02-03 13:10:12,124 [wrapper] cleanup supervisor_pilot 1321666 1310505
[2026-02-03 14:10:12] 2026-02-03 13:10:12,127 [wrapper] Test setup, not cleaning
[2026-02-03 14:10:12] 2026-02-03 13:10:12,129 [wrapper] apfmon messages muted
[2026-02-03 14:10:12] 2026-02-03 13:10:12,131 [wrapper] ==== wrapper stdout END ====
[2026-02-03 14:10:12] 2026-02-03 13:10:12,133 [wrapper] ==== wrapper stderr END ====
[2026-02-03 14:10:12]  *** Error codes and diagnostics ***
[2026-02-03 14:10:12]     "exeErrorCode": 0,
[2026-02-03 14:10:12]     "exeErrorDiag": "",
[2026-02-03 14:10:12]     "pilotErrorCode": 0,
[2026-02-03 14:10:12]     "pilotErrorDiag": "",
[2026-02-03 14:10:12]  *** Listing of results directory ***
[2026-02-03 14:10:12] total 903008
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc    584422 Feb  2 21:18 pilot3.tar.gz
[2026-02-03 14:10:12] -rwx------ 1 boinc boinc     36322 Feb  2 21:18 runpilot2-wrapper.sh
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc      5111 Feb  2 21:19 queuedata.json
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc       100 Feb  3 12:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 14:10:12] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 12:17 run_atlas
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc       105 Feb  3 12:17 job.xml
[2026-02-03 14:10:12] -rw-r--r-- 2 boinc boinc 657841991 Feb  3 12:17 EVNT.48431078._000139.pool.root.1
[2026-02-03 14:10:12] -rw-r--r-- 2 boinc boinc    597764 Feb  3 12:17 input.tar.gz
[2026-02-03 14:10:12] -rw-r--r-- 2 boinc boinc     15845 Feb  3 12:17 start_atlas.sh
[2026-02-03 14:10:12] drwxrwx--x 2 boinc boinc      4096 Feb  3 12:17 shared
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc         0 Feb  3 12:17 boinc_setup_complete
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc      6447 Feb  3 12:17 init_data.xml
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc         0 Feb  3 12:17 boinc_lockfile
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc      2556 Feb  3 12:17 pandaJob.out
[2026-02-03 14:10:12] -rw------- 1 boinc boinc   1009250 Feb  3 12:17 agis_schedconf.cvmfs.json
[2026-02-03 14:10:12] -rw------- 1 boinc boinc   1511668 Feb  3 12:17 agis_ddmendpoints.agis.ALL.json
[2026-02-03 14:10:12] -rw------- 1 boinc boinc       428 Feb  3 12:17 workernode_map.json
[2026-02-03 14:10:12] drwx------ 5 boinc boinc      4096 Feb  3 12:17 pilot3
[2026-02-03 14:10:12] -rw------- 1 boinc boinc        95 Feb  3 14:08 pilot_heartbeat.json
[2026-02-03 14:10:12] -rw------- 1 boinc boinc 260444424 Feb  3 14:09 HITS.48431080._007237.pool.root.1
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc       530 Feb  3 14:09 boinc_task_state.xml
[2026-02-03 14:10:12] -rw------- 1 boinc boinc      1017 Feb  3 14:09 memory_monitor_summary.json
[2026-02-03 14:10:12] -rw------- 1 boinc boinc    266105 Feb  3 14:09 log.48431080._007237.job.log.tgz.1
[2026-02-03 14:10:12] -rw------- 1 boinc boinc      6313 Feb  3 14:09 heartbeat.json
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc      8192 Feb  3 14:10 boinc_mmap_file
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc        27 Feb  3 14:10 wrapper_checkpoint.txt
[2026-02-03 14:10:12] -rw------- 1 boinc boinc      4810 Feb  3 14:10 pilotlog.txt
[2026-02-03 14:10:12] -rw------- 1 boinc boinc    964921 Feb  3 14:10 log.48431080._007237.job.log.1
[2026-02-03 14:10:12] -rw------- 1 boinc boinc       357 Feb  3 14:10 output.list
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc       620 Feb  3 14:10 runtime_log
[2026-02-03 14:10:12] -rw------- 1 boinc boinc   1249280 Feb  3 14:10 result.tar.gz
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc      8916 Feb  3 14:10 runtime_log.err
[2026-02-03 14:10:12] -rw------- 1 boinc boinc       661 Feb  3 14:10 9NeMDmzYF78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmIPTKDmrUtRfm.diag
[2026-02-03 14:10:12] -rw-r--r-- 1 boinc boinc     12594 Feb  3 14:10 stderr.txt
[2026-02-03 14:10:12] HITS file was successfully produced:
[2026-02-03 14:10:12] -rw------- 1 boinc boinc 260444424 Feb  3 14:09 shared/HITS.pool.root.1
[2026-02-03 14:10:12]  *** Contents of shared directory: ***
[2026-02-03 14:10:12] total 898596
[2026-02-03 14:10:12] -rw-r--r-- 2 boinc boinc 657841991 Feb  3 12:17 ATLAS.root_0
[2026-02-03 14:10:12] -rw-r--r-- 2 boinc boinc    597764 Feb  3 12:17 input.tar.gz
[2026-02-03 14:10:12] -rw-r--r-- 2 boinc boinc     15845 Feb  3 12:17 start_atlas.sh
[2026-02-03 14:10:12] -rw------- 1 boinc boinc 260444424 Feb  3 14:09 HITS.pool.root.1
[2026-02-03 14:10:12] -rw------- 1 boinc boinc   1249280 Feb  3 14:10 result.tar.gz
14:10:13 (1306464): run_atlas exited; CPU time 19409.201603
14:10:13 (1306464): called boinc_finish(0)

</stderr_txt>
]]>

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