Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:27:42 (3421173): wrapper (7.7.26015): starting
04:27:42 (3421173): wrapper: running run_atlas (--nthreads 12)
[2026-02-03 04:27:42] Arguments: --nthreads 12
[2026-02-03 04:27:42] Threads: 12
[2026-02-03 04:27:42] Checking for CVMFS
[2026-02-03 04:27:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 04:27:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 04:27:42] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 04:27:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 04:27:42] 2.13.3.0 4294 38044 160520 155815 3 52 26083766 46080000 922 130560 0 51550554 99.995 1250980 675 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-02-03 04:27:42] CVMFS is ok
[2026-02-03 04:27:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 04:27:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 04:27:42] Further information can be found at the LHC@home message board.
[2026-02-03 04:27:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 04:27:42] Checking for apptainer binary...
[2026-02-03 04:27:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 04:27:42] Running /usr/bin/apptainer --version
[2026-02-03 04:27:42] apptainer version 1.4.5-2.el9
[2026-02-03 04:27:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 04:27:42] gpu01.farm.particle.cz
[2026-02-03 04:27:42] apptainer works
[2026-02-03 04:27:42] Set ATHENA_PROC_NUMBER=12
[2026-02-03 04:27:42] Set ATHENA_CORE_NUMBER=12
[2026-02-03 04:27:42] Starting ATLAS job with PandaID=6983062073
[2026-02-03 04:27:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 05:06:14]  *** The last 200 lines of the pilot log: ***
[2026-02-03 05:06:14]  mtime=0
[2026-02-03 05:06:14]  protocol_id=None
[2026-02-03 05:06:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-03 05:06:14]  replicas=None
[2026-02-03 05:06:14]  scope=mc23_13p6TeV
[2026-02-03 05:06:14]  status=None
[2026-02-03 05:06:14]  status_code=0
[2026-02-03 05:06:14]  storage_token=
[2026-02-03 05:06:14]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6983062073/log.48310724._009997.job.log.tgz.1
[2026-02-03 05:06:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/bd/log.48310724._009997.job.log.tgz.1
[2026-02-03 05:06:14]  workdir=None
[2026-02-03 05:06:14] ]
[2026-02-03 05:06:14] 2026-02-03 04:05:36,694 | INFO     | transferring file log.48310724._009997.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6983062073/log.48310724._009997.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-03 05:06:14] 2026-02-03 04:05:36,694 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6983062073/log.48310724._009997.job.log.tgz.1 /var/lib/boinc/slots/1/log.48310724._009997.job
[2026-02-03 05:06:14] 2026-02-03 04:05:36,708 | INFO     | adding to output.list: log.48310724._009997.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/bd/log.48310724._009997.job.log.tg
[2026-02-03 05:06:14] 2026-02-03 04:05:36,708 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-03 05:06:14] 2026-02-03 04:05:36,708 | INFO     | summary of transferred files:
[2026-02-03 05:06:14] 2026-02-03 04:05:36,708 | INFO     |  -- lfn=log.48310724._009997.job.log.tgz.1, status_code=0, status=transferred
[2026-02-03 05:06:14] 2026-02-03 04:05:36,708 | INFO     | stage-out finished correctly
[2026-02-03 05:06:14] 2026-02-03 04:05:37,481 | INFO     | time since job start (2265s) is within the limit (349056.0s)
[2026-02-03 05:06:14] 2026-02-03 04:05:38,185 | INFO     | monitor loop #175: job 0:6983062073 is in state 'finished'
[2026-02-03 05:06:14] 2026-02-03 04:05:38,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-03 05:06:14] 2026-02-03 04:05:39,486 | INFO     | time since job start (2267s) is within the limit (349056.0s)
[2026-02-03 05:06:14] 2026-02-03 04:05:39,492 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-03 05:06:14] 2026-02-03 04:05:40,637 | INFO     | PID=3425041 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 05:06:14] 2026-02-03 04:05:40,637 | INFO     | .. there are 2 such processes running
[2026-02-03 05:06:14] 2026-02-03 04:05:40,689 | INFO     | monitor loop #176: job 0:6983062073 is in state 'finished'
[2026-02-03 05:06:14] 2026-02-03 04:05:40,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-03 05:06:14] 2026-02-03 04:05:41,637 | INFO     | time since job start (2269s) is within the limit (349056.0s)
[2026-02-03 05:06:14] 2026-02-03 04:05:41,789 | INFO     | job 6983062073 has state=finished
[2026-02-03 05:06:14] 2026-02-03 04:05:41,789 | INFO     | preparing for final server update for job 6983062073 in state='finished'
[2026-02-03 05:06:14] 2026-02-03 04:05:42,256 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,256 | INFO     | reading metadata from: /var/lib/boinc/slots/1/PanDA_Pilot-6983062073/jobReport.json
[2026-02-03 05:06:14] 2026-02-03 04:05:42,258 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/1/workernode_map.json
[2026-02-03 05:06:14] 2026-02-03 04:05:42,258 | INFO     | this job has now completed (state=finished)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,258 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,258 | INFO     | log transfer has been attempted: DONE
[2026-02-03 05:06:14] 2026-02-03 04:05:42,259 | INFO     | job 6983062073 has finished - writing final server update
[2026-02-03 05:06:14] 2026-02-03 04:05:42,259 | INFO     | total number of processed events: 400 (read)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,264 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6983062073/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,264 | INFO     | extracted standard info from prmon json
[2026-02-03 05:06:14] 2026-02-03 04:05:42,265 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 05:06:14] 2026-02-03 04:05:42,265 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 05:06:14] 2026-02-03 04:05:42,265 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 05:06:14] 2026-02-03 04:05:42,265 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 05:06:14] 2026-02-03 04:05:42,266 | INFO     | fitting pss+swap vs Time
[2026-02-03 05:06:14] 2026-02-03 04:05:42,266 | INFO     | sum of square deviations: 8362947.5
[2026-02-03 05:06:14] 2026-02-03 04:05:42,266 | INFO     | sum of deviations: 221100081.5
[2026-02-03 05:06:14] 2026-02-03 04:05:42,266 | INFO     | mean x: 1770090479.5
[2026-02-03 05:06:14] 2026-02-03 04:05:42,266 | INFO     | mean y: 2906919.966666667
[2026-02-03 05:06:14] 2026-02-03 04:05:42,266 | INFO     | intersect: -46794845819.70126
[2026-02-03 05:06:14] 2026-02-03 04:05:42,266 | INFO     | chi2: 3.176311023421989e-05
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | current memory leak: 26.44 B/s (using 30 data points, chi2=0.00)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | could have reported an average CPU frequency of 3143 MHz (5 samples)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | ..............................
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | . Timing measurements:
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | . get job = 0 s
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | . initial setup = 4 s
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | . payload setup = 3 s
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | . stage-in = 0 s
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | . payload execution = 2246 s
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | . stage-out = 0 s
[2026-02-03 05:06:14] 2026-02-03 04:05:42,267 | INFO     | . log creation = 0 s
[2026-02-03 05:06:14] 2026-02-03 04:05:42,268 | INFO     | ..............................
[2026-02-03 05:06:14] 2026-02-03 04:05:42,318 | INFO     | 
[2026-02-03 05:06:14] 2026-02-03 04:05:42,318 | INFO     | job summary report
[2026-02-03 05:06:14] 2026-02-03 04:05:42,318 | INFO     | --------------------------------------------------
[2026-02-03 05:06:14] 2026-02-03 04:05:42,318 | INFO     | PanDA job id: 6983062073
[2026-02-03 05:06:14] 2026-02-03 04:05:42,318 | INFO     | task id: 48310724
[2026-02-03 05:06:14] 2026-02-03 04:05:42,318 | INFO     | errors: (none)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | pilot state: finished 
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | transexitcode: 0
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | exeerrorcode: 0
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | exeerrordiag: 
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | exitcode: 0
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | exitmsg: OK
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | cpuconsumptiontime: 24673 s
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | nevents: 400
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | neventsw: 0
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | pid: 3429637
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | pgrp: 3429637
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | corecount: 12
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | event service: False
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | sizes: {0: 2277851, 1: 2278312, 11: 2278312, 2253: 2303437, 2254: 2312435, 2256: 2312491, 2259: 2312845}
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | --------------------------------------------------
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | 
[2026-02-03 05:06:14] 2026-02-03 04:05:42,319 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-02-03 05:06:14] 2026-02-03 04:05:42,333 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,334 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,335 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,335 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,335 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 05:06:14] 2026-02-03 04:05:42,335 | INFO     | job 6983062073 has completed (purged errors)
[2026-02-03 05:06:14] 2026-02-03 04:05:42,335 | INFO     | overall cleanup function is called
[2026-02-03 05:06:14] 2026-02-03 04:05:43,344 | INFO     | --- collectZombieJob: --- 10, [3429637]
[2026-02-03 05:06:14] 2026-02-03 04:05:43,344 | INFO     | zombie collector waiting for pid 3429637
[2026-02-03 05:06:14] 2026-02-03 04:05:43,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 05:06:14] 2026-02-03 04:05:43,344 | INFO     | collected zombie processes
[2026-02-03 05:06:14] 2026-02-03 04:05:43,344 | INFO     | will attempt to kill all subprocesses of pid=3429637
[2026-02-03 05:06:14] 2026-02-03 04:05:43,435 | INFO     | process IDs to be killed: [3429637] (in reverse order)
[2026-02-03 05:06:14] 2026-02-03 04:05:43,474 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 05:06:14] 2026-02-03 04:05:43,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 05:06:14] 2026-02-03 04:05:43,477 | INFO     | did not find any defunct processes belonging to 3429637
[2026-02-03 05:06:14] 2026-02-03 04:05:43,480 | INFO     | did not find any defunct processes belonging to 3429637
[2026-02-03 05:06:14] 2026-02-03 04:05:43,480 | INFO     | ready for new job
[2026-02-03 05:06:14] 2026-02-03 04:05:43,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 05:06:14] 2026-02-03 04:05:43,481 | INFO     | **************************************
[2026-02-03 05:06:14] 2026-02-03 04:05:43,481 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 05:06:14] 2026-02-03 04:05:43,481 | INFO     | **************************************
[2026-02-03 05:06:14] 2026-02-03 04:05:43,481 | INFO     | 
[2026-02-03 05:06:14] 2026-02-03 04:05:43,482 | INFO     | architecture information:
[2026-02-03 05:06:14] 2026-02-03 04:05:43,483 | INFO     | executing command: cat /etc/os-release
[2026-02-03 05:06:14] 2026-02-03 04:05:43,494 | INFO     | cat /etc/os-release:
[2026-02-03 05:06:14] NAME="CentOS Linux"
[2026-02-03 05:06:14] VERSION="7 (Core)"
[2026-02-03 05:06:14] ID="centos"
[2026-02-03 05:06:14] ID_LIKE="rhel fedora"
[2026-02-03 05:06:14] VERSION_ID="7"
[2026-02-03 05:06:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 05:06:14] ANSI_COLOR="0;31"
[2026-02-03 05:06:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 05:06:14] HOME_URL="https://www.centos.org/"
[2026-02-03 05:06:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 05:06:14] 
[2026-02-03 05:06:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 05:06:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 05:06:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 05:06:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 05:06:14] 
[2026-02-03 05:06:14] 2026-02-03 04:05:43,494 | INFO     | **************************************
[2026-02-03 05:06:14] 2026-02-03 04:05:43,997 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-02-03 05:06:14] 2026-02-03 04:05:44,010 | INFO     | sufficient remaining disk space (38043385856 B)
[2026-02-03 05:06:14] 2026-02-03 04:05:44,011 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 05:06:14] 2026-02-03 04:05:44,011 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 05:06:14] 2026-02-03 04:05:44,011 | INFO     | update_server=False
[2026-02-03 05:06:14] 2026-02-03 04:05:44,011 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 05:06:14] 2026-02-03 04:05:44,011 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 05:06:14] 2026-02-03 04:05:44,127 | INFO     | all job control threads have been joined
[2026-02-03 05:06:14] 2026-02-03 04:05:44,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 05:06:14] 2026-02-03 04:05:44,197 | INFO     | aborting loop
[2026-02-03 05:06:14] 2026-02-03 04:05:44,353 | INFO     | all payload control threads have been joined
[2026-02-03 05:06:14] 2026-02-03 04:05:44,770 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 05:06:14] 2026-02-03 04:05:45,016 | INFO     | [job] retrieve thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:45,017 | INFO     | [job] queue monitor thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:45,079 | INFO     | all data control threads have been joined
[2026-02-03 05:06:14] 2026-02-03 04:05:45,133 | INFO     | [job] control thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:45,202 | INFO     | [job] job monitor thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:45,275 | INFO     | [payload] validate_post thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:45,358 | INFO     | [payload] control thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:45,470 | INFO     | [job] validate thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:45,546 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 05:06:14] 2026-02-03 04:05:45,680 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:45,708 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:45,921 | INFO     | [data] copytool_in thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:46,084 | INFO     | [data] control thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:46,219 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:46,223 | INFO     | [payload] failed_post thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:46,776 | INFO     | [data] copytool_out thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:49,552 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:54,925 | INFO     | job.realtimelogging is not enabled
[2026-02-03 05:06:14] 2026-02-03 04:05:55,200 | INFO     | [monitor] cgroup control has ended
[2026-02-03 05:06:14] 2026-02-03 04:05:55,930 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 05:06:14] 2026-02-03 04:05:56,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140079383308096)>', '<ExcThread(monitor, started 140078949070592)>']
[2026-02-03 05:06:14] 2026-02-03 04:06:01,444 | INFO     | all workflow threads have been joined
[2026-02-03 05:06:14] 2026-02-03 04:06:01,444 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 05:06:14] 2026-02-03 04:06:01,444 | INFO     | traces error code: 0
[2026-02-03 05:06:14] 2026-02-03 04:06:01,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 05:06:14] 2026-02-03 04:06:14,813 | INFO     | PID=3425041 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 05:06:14] 2026-02-03 04:06:14,813 | INFO     | .. there are 2 such processes running
[2026-02-03 05:06:14] 2026-02-03 04:06:14,814 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 05:06:14] 2026-02-03 04:06:14,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 05:06:14] 2026-02-03 04:06:14,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 05:06:14] 2026-02-03 04:06:14,814 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 05:06:14] 2026-02-03 04:06:14,814 | INFO     | [monitor] control thread has ended
[2026-02-03 05:06:14] 2026-02-03 04:06:14,881 [wrapper] ==== pilot stdout END ====
[2026-02-03 05:06:14] 2026-02-03 04:06:14,883 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 05:06:14] 2026-02-03 04:06:14,885 [wrapper] pilotpid: 3425041
[2026-02-03 05:06:14] 2026-02-03 04:06:14,887 [wrapper] Pilot exit status: 0
[2026-02-03 05:06:14] 2026-02-03 04:06:14,895 [wrapper] pandaids: 6983062073
[2026-02-03 05:06:14] 2026-02-03 04:06:14,921 [wrapper] cleanup supervisor_pilot 3463020 3425042
[2026-02-03 05:06:14] 2026-02-03 04:06:14,923 [wrapper] Test setup, not cleaning
[2026-02-03 05:06:14] 2026-02-03 04:06:14,925 [wrapper] apfmon messages muted
[2026-02-03 05:06:14] 2026-02-03 04:06:14,927 [wrapper] ==== wrapper stdout END ====
[2026-02-03 05:06:14] 2026-02-03 04:06:14,928 [wrapper] ==== wrapper stderr END ====
[2026-02-03 05:06:14]  *** Error codes and diagnostics ***
[2026-02-03 05:06:14]     "exeErrorCode": 0,
[2026-02-03 05:06:14]     "exeErrorDiag": "",
[2026-02-03 05:06:14]     "pilotErrorCode": 0,
[2026-02-03 05:06:14]     "pilotErrorDiag": "",
[2026-02-03 05:06:14]  *** Listing of results directory ***
[2026-02-03 05:06:14] total 661844
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc    584422 Jan 25 17:28 pilot3.tar.gz
[2026-02-03 05:06:14] -rwx------ 1 boinc boinc     36322 Jan 25 17:31 runpilot2-wrapper.sh
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc      5111 Jan 25 17:35 queuedata.json
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc       100 Feb  3 04:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 05:06:14] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 04:27 run_atlas
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc       105 Feb  3 04:27 job.xml
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc      9457 Feb  3 04:27 init_data.xml
[2026-02-03 05:06:14] -rw-r--r-- 2 boinc boinc 497627498 Feb  3 04:27 EVNT.48310721._000200.pool.root.1
[2026-02-03 05:06:14] -rw-r--r-- 2 boinc boinc     15845 Feb  3 04:27 start_atlas.sh
[2026-02-03 05:06:14] drwxrwx--x 2 boinc boinc      4096 Feb  3 04:27 shared
[2026-02-03 05:06:14] -rw-r--r-- 2 boinc boinc    597762 Feb  3 04:27 input.tar.gz
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc         0 Feb  3 04:27 boinc_lockfile
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc      2534 Feb  3 04:27 pandaJob.out
[2026-02-03 05:06:14] -rw------- 1 boinc boinc   1009324 Feb  3 04:27 agis_schedconf.cvmfs.json
[2026-02-03 05:06:14] -rw------- 1 boinc boinc   1511668 Feb  3 04:27 agis_ddmendpoints.agis.ALL.json
[2026-02-03 05:06:14] -rw------- 1 boinc boinc       433 Feb  3 04:27 workernode_map.json
[2026-02-03 05:06:14] drwx------ 5 boinc boinc      4096 Feb  3 04:27 pilot3
[2026-02-03 05:06:14] -rw------- 1 boinc boinc 174652600 Feb  3 05:05 HITS.48310724._009997.pool.root.1
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc       530 Feb  3 05:05 boinc_task_state.xml
[2026-02-03 05:06:14] -rw------- 1 boinc boinc      1014 Feb  3 05:05 memory_monitor_summary.json
[2026-02-03 05:06:14] -rw------- 1 boinc boinc    385799 Feb  3 05:05 log.48310724._009997.job.log.tgz.1
[2026-02-03 05:06:14] -rw------- 1 boinc boinc      6318 Feb  3 05:05 heartbeat.json
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc      8192 Feb  3 05:06 boinc_mmap_file
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc        27 Feb  3 05:06 wrapper_checkpoint.txt
[2026-02-03 05:06:14] -rw------- 1 boinc boinc        95 Feb  3 05:06 pilot_heartbeat.json
[2026-02-03 05:06:14] -rw------- 1 boinc boinc       822 Feb  3 05:06 pilotlog.txt
[2026-02-03 05:06:14] -rw------- 1 boinc boinc    365397 Feb  3 05:06 log.48310724._009997.job.log.1
[2026-02-03 05:06:14] -rw------- 1 boinc boinc       357 Feb  3 05:06 output.list
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc       620 Feb  3 05:06 runtime_log
[2026-02-03 05:06:14] -rw------- 1 boinc boinc    768000 Feb  3 05:06 result.tar.gz
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc      8853 Feb  3 05:06 runtime_log.err
[2026-02-03 05:06:14] -rw------- 1 boinc boinc       658 Feb  3 05:06 alRMDmkCI48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlN1KDmWxmlUn.diag
[2026-02-03 05:06:14] -rw-r--r-- 1 boinc boinc     21785 Feb  3 05:06 stderr.txt
[2026-02-03 05:06:14] HITS file was successfully produced:
[2026-02-03 05:06:14] -rw------- 1 boinc boinc 174652600 Feb  3 05:05 shared/HITS.pool.root.1
[2026-02-03 05:06:14]  *** Contents of shared directory: ***
[2026-02-03 05:06:15] total 657888
[2026-02-03 05:06:15] -rw-r--r-- 2 boinc boinc 497627498 Feb  3 04:27 ATLAS.root_0
[2026-02-03 05:06:15] -rw-r--r-- 2 boinc boinc     15845 Feb  3 04:27 start_atlas.sh
[2026-02-03 05:06:15] -rw-r--r-- 2 boinc boinc    597762 Feb  3 04:27 input.tar.gz
[2026-02-03 05:06:15] -rw------- 1 boinc boinc 174652600 Feb  3 05:05 HITS.pool.root.1
[2026-02-03 05:06:15] -rw------- 1 boinc boinc    768000 Feb  3 05:06 result.tar.gz
05:06:16 (3421173): run_atlas exited; CPU time 24692.384781
05:06:16 (3421173): called boinc_finish(0)

</stderr_txt>
]]>

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