Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:23:51 (835993): wrapper (7.7.26015): starting
08:23:51 (835993): wrapper: running run_atlas (--nthreads 4)
[2026-02-03 08:23:51] Arguments: --nthreads 4
[2026-02-03 08:23:51] Threads: 4
[2026-02-03 08:23:51] Checking for CVMFS
[2026-02-03 08:23:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 08:23:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 08:23:52] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 08:23:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 08:23:52] 2.9.2.0 3106 4624 93708 155822 0 49 25797710 36864001 0 130560 0 2346405 99.986 171189 9518 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-03 08:23:52] CVMFS is ok
[2026-02-03 08:23:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 08:23:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 08:23:52] Further information can be found at the LHC@home message board.
[2026-02-03 08:23:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 08:23:52] Checking for apptainer binary...
[2026-02-03 08:23:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 08:23:52] Running /usr/bin/apptainer --version
[2026-02-03 08:23:52] apptainer version 1.4.1-1.1
[2026-02-03 08:23:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 08:23:52] thA314a
[2026-02-03 08:23:52] apptainer works
[2026-02-03 08:23:52] Set ATHENA_PROC_NUMBER=4
[2026-02-03 08:23:52] Set ATHENA_CORE_NUMBER=4
[2026-02-03 08:23:52] Starting ATLAS job with PandaID=6983602332
[2026-02-03 08:23:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 10:10:28]  *** The last 200 lines of the pilot log: ***
[2026-02-03 10:10:28] 2026-02-03 09:09:57,358 | INFO     | process IDs to be killed: [844633] (in reverse order)
[2026-02-03 10:10:28] 2026-02-03 09:09:57,389 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 10:10:28] 2026-02-03 09:09:57,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 10:10:28] 2026-02-03 09:09:57,391 | INFO     | did not find any defunct processes belonging to 844633
[2026-02-03 10:10:28] 2026-02-03 09:09:57,392 | INFO     | did not find any defunct processes belonging to 844633
[2026-02-03 10:10:28] 2026-02-03 09:09:57,392 | INFO     | ready for new job
[2026-02-03 10:10:28] 2026-02-03 09:09:57,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 10:10:28] 2026-02-03 09:09:57,393 | INFO     | **************************************
[2026-02-03 10:10:28] 2026-02-03 09:09:57,393 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 10:10:28] 2026-02-03 09:09:57,393 | INFO     | **************************************
[2026-02-03 10:10:28] 2026-02-03 09:09:57,393 | INFO     | 
[2026-02-03 10:10:28] 2026-02-03 09:09:57,394 | INFO     | architecture information:
[2026-02-03 10:10:28] 2026-02-03 09:09:57,394 | INFO     | executing command: cat /etc/os-release
[2026-02-03 10:10:28] 2026-02-03 09:09:57,407 | INFO     | cat /etc/os-release:
[2026-02-03 10:10:28] NAME="CentOS Linux"
[2026-02-03 10:10:28] VERSION="7 (Core)"
[2026-02-03 10:10:28] ID="centos"
[2026-02-03 10:10:28] ID_LIKE="rhel fedora"
[2026-02-03 10:10:28] VERSION_ID="7"
[2026-02-03 10:10:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 10:10:28] ANSI_COLOR="0;31"
[2026-02-03 10:10:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 10:10:28] HOME_URL="https://www.centos.org/"
[2026-02-03 10:10:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 10:10:28] 
[2026-02-03 10:10:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 10:10:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 10:10:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 10:10:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 10:10:28] 
[2026-02-03 10:10:28] 2026-02-03 09:09:57,407 | INFO     | **************************************
[2026-02-03 10:10:28] 2026-02-03 09:09:57,911 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-03 10:10:28] 2026-02-03 09:09:57,927 | INFO     | sufficient remaining disk space (230855540736 B)
[2026-02-03 10:10:28] 2026-02-03 09:09:57,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 10:10:28] 2026-02-03 09:09:57,928 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 10:10:28] 2026-02-03 09:09:57,928 | INFO     | update_server=False
[2026-02-03 10:10:28] 2026-02-03 09:09:57,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 10:10:28] 2026-02-03 09:09:57,928 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 10:10:28] 2026-02-03 09:09:57,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 10:10:28] 2026-02-03 09:09:58,022 | INFO     | all payload control threads have been joined
[2026-02-03 10:10:28] 2026-02-03 09:09:58,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 10:10:28] 2026-02-03 09:09:58,325 | INFO     | all job control threads have been joined
[2026-02-03 10:10:28] 2026-02-03 09:09:58,933 | INFO     | [job] retrieve thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:09:58,934 | INFO     | [job] queue monitor thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:09:58,963 | WARNING  | process 844633 can no longer be monitored (due to stat problems) - aborting
[2026-02-03 10:10:28] 2026-02-03 09:09:58,977 | INFO     | all data control threads have been joined
[2026-02-03 10:10:28] 2026-02-03 09:09:58,993 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 10:10:28] 2026-02-03 09:09:59,026 | INFO     | [data] copytool_in thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:09:59,027 | INFO     | [payload] control thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:09:59,031 | INFO     | number of running child processes to parent process 844633: 1
[2026-02-03 10:10:28] 2026-02-03 09:09:59,031 | INFO     | maximum number of monitored processes: 6
[2026-02-03 10:10:28] 2026-02-03 09:09:59,031 | INFO     | aborting job monitoring since job object (job id=6983602332) has expired
[2026-02-03 10:10:28] 2026-02-03 09:09:59,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 10:10:28] 2026-02-03 09:09:59,031 | INFO     | will abort loop
[2026-02-03 10:10:28] 2026-02-03 09:09:59,331 | INFO     | [job] control thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:09:59,613 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:09:59,978 | INFO     | [data] control thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:00,011 | INFO     | [payload] failed_post thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:00,037 | INFO     | [job] job monitor thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:00,193 | INFO     | [job] validate thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:00,235 | INFO     | [data] copytool_out thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:00,330 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:00,364 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:00,521 | INFO     | [payload] validate_post thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:01,935 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:08,720 | INFO     | job.realtimelogging is not enabled
[2026-02-03 10:10:28] 2026-02-03 09:10:09,722 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 10:10:28] 2026-02-03 09:10:11,906 | INFO     | [monitor] cgroup control has ended
[2026-02-03 10:10:28] 2026-02-03 09:10:13,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140150715029312)>', '<ExcThread(monitor, started 140149950248704)>']
[2026-02-03 10:10:28] 2026-02-03 09:10:18,197 | INFO     | all workflow threads have been joined
[2026-02-03 10:10:28] 2026-02-03 09:10:18,197 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 10:10:28] 2026-02-03 09:10:18,197 | INFO     | traces error code: 0
[2026-02-03 10:10:28] 2026-02-03 09:10:18,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 10:10:28] 2026-02-03 09:10:28,724 | INFO     | PID=840103 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-03 10:10:28] 2026-02-03 09:10:28,724 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 10:10:28] 2026-02-03 09:10:28,724 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 10:10:28] 2026-02-03 09:10:28,724 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 10:10:28] 2026-02-03 09:10:28,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 10:10:28] 2026-02-03 09:10:28,724 | INFO     | [monitor] control thread has ended
[2026-02-03 10:10:28] 2026-02-03 09:10:28,789 [wrapper] ==== pilot stdout END ====
[2026-02-03 10:10:28] 2026-02-03 09:10:28,793 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 10:10:28] 2026-02-03 09:10:28,797 [wrapper] pilotpid: 840103
[2026-02-03 10:10:28] 2026-02-03 09:10:28,800 [wrapper] Pilot exit status: 0
[2026-02-03 10:10:28] 2026-02-03 09:10:28,810 [wrapper] pandaids: 6983602332
[2026-02-03 10:10:28] 2026-02-03 09:10:28,831 [wrapper] cleanup supervisor_pilot  850297 840104
[2026-02-03 10:10:28] 2026-02-03 09:10:28,835 [wrapper] Test setup, not cleaning
[2026-02-03 10:10:28] 2026-02-03 09:10:28,838 [wrapper] apfmon messages muted
[2026-02-03 10:10:28] 2026-02-03 09:10:28,841 [wrapper] ==== wrapper stdout END ====
[2026-02-03 10:10:28] 2026-02-03 09:10:28,845 [wrapper] ==== wrapper stderr END ====
[2026-02-03 10:10:28]  *** Error codes and diagnostics ***
[2026-02-03 10:10:28]     "exeErrorCode": 0,
[2026-02-03 10:10:28]     "exeErrorDiag": "",
[2026-02-03 10:10:28]     "pilotErrorCode": 0,
[2026-02-03 10:10:28]     "pilotErrorDiag": "",
[2026-02-03 10:10:28]  *** Listing of results directory ***
[2026-02-03 10:10:28] total 463268
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-02-03 10:10:28] -rwx------ 1 boinc boinc     36322 Jan 26 02:15 runpilot2-wrapper.sh
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:18 queuedata.json
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc       100 Feb  3 08:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 10:10:28] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 08:23 run_atlas
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc       105 Feb  3 08:23 job.xml
[2026-02-03 10:10:28] -rw-r--r-- 2 boinc boinc 271369463 Feb  3 08:23 EVNT.48329614._000001.pool.root.1
[2026-02-03 10:10:28] -rw-r--r-- 2 boinc boinc    597767 Feb  3 08:23 input.tar.gz
[2026-02-03 10:10:28] -rw-r--r-- 2 boinc boinc     15845 Feb  3 08:23 start_atlas.sh
[2026-02-03 10:10:28] drwxrwx--x 2 boinc boinc      4096 Feb  3 08:23 shared
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc         0 Feb  3 08:23 boinc_setup_complete
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc      6371 Feb  3 08:23 init_data.xml
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc         0 Feb  3 08:23 boinc_lockfile
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc      2605 Feb  3 08:23 pandaJob.out
[2026-02-03 10:10:28] -rw------- 1 boinc boinc   1009324 Feb  3 08:23 agis_schedconf.cvmfs.json
[2026-02-03 10:10:28] -rw------- 1 boinc boinc   1511668 Feb  3 08:24 agis_ddmendpoints.agis.ALL.json
[2026-02-03 10:10:28] -rw------- 1 boinc boinc       428 Feb  3 08:24 workernode_map.json
[2026-02-03 10:10:28] drwx------ 5 boinc boinc      4096 Feb  3 08:24 pilot3
[2026-02-03 10:10:28] -rw------- 1 boinc boinc        95 Feb  3 10:09 pilot_heartbeat.json
[2026-02-03 10:10:28] -rw------- 1 boinc boinc 196646107 Feb  3 10:09 HITS.48329616._000022.pool.root.1
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc       529 Feb  3 10:09 boinc_task_state.xml
[2026-02-03 10:10:28] -rw------- 1 boinc boinc      1018 Feb  3 10:09 memory_monitor_summary.json
[2026-02-03 10:10:28] -rw------- 1 boinc boinc    300013 Feb  3 10:09 log.48329616._000022.job.log.tgz.1
[2026-02-03 10:10:28] -rw------- 1 boinc boinc      6301 Feb  3 10:09 heartbeat.json
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc        27 Feb  3 10:10 wrapper_checkpoint.txt
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc      8192 Feb  3 10:10 boinc_mmap_file
[2026-02-03 10:10:28] -rw------- 1 boinc boinc       746 Feb  3 10:10 pilotlog.txt
[2026-02-03 10:10:28] -rw------- 1 boinc boinc    917524 Feb  3 10:10 log.48329616._000022.job.log.1
[2026-02-03 10:10:28] -rw------- 1 boinc boinc       357 Feb  3 10:10 output.list
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc       620 Feb  3 10:10 runtime_log
[2026-02-03 10:10:28] -rw------- 1 boinc boinc   1239040 Feb  3 10:10 result.tar.gz
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc      8901 Feb  3 10:10 runtime_log.err
[2026-02-03 10:10:28] -rw------- 1 boinc boinc       658 Feb  3 10:10 H9bMDmONQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEq8KDmWxJinm.diag
[2026-02-03 10:10:28] -rw-r--r-- 1 boinc boinc     10797 Feb  3 10:10 stderr.txt
[2026-02-03 10:10:28] HITS file was successfully produced:
[2026-02-03 10:10:28] -rw------- 1 boinc boinc 196646107 Feb  3 10:09 shared/HITS.pool.root.1
[2026-02-03 10:10:28]  *** Contents of shared directory: ***
[2026-02-03 10:10:28] total 458872
[2026-02-03 10:10:28] -rw-r--r-- 2 boinc boinc 271369463 Feb  3 08:23 ATLAS.root_0
[2026-02-03 10:10:28] -rw-r--r-- 2 boinc boinc    597767 Feb  3 08:23 input.tar.gz
[2026-02-03 10:10:28] -rw-r--r-- 2 boinc boinc     15845 Feb  3 08:23 start_atlas.sh
[2026-02-03 10:10:28] -rw------- 1 boinc boinc 196646107 Feb  3 10:09 HITS.pool.root.1
[2026-02-03 10:10:28] -rw------- 1 boinc boinc   1239040 Feb  3 10:10 result.tar.gz
10:10:29 (835993): run_atlas exited; CPU time 24427.865849
10:10:29 (835993): called boinc_finish(0)

</stderr_txt>
]]>

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