Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:02:53 (2579): wrapper (7.7.26015): starting
05:02:53 (2579): wrapper: running run_atlas (--nthreads 8)
[2026-02-03 05:02:53] Arguments: --nthreads 8
[2026-02-03 05:02:53] Threads: 8
[2026-02-03 05:02:53] Checking for CVMFS
[2026-02-03 05:02:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 05:02:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 05:02:57] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 05:02:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 05:02:58] 2.11.2.0 28598 70909 131644 155815 0 93 23355116 25165824 939 130560 0 27115631 99.832 17635911 2588 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-03 05:02:58] CVMFS is ok
[2026-02-03 05:02:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 05:02:58] Checking for apptainer binary...
[2026-02-03 05:02:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 05:02:58] Running /usr/bin/apptainer --version
[2026-02-03 05:02:59] apptainer version 1.3.2-1.el7
[2026-02-03 05:02:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 05:03:27] cg-vwn446.simple-grid.lan
[2026-02-03 05:03:27] apptainer works
[2026-02-03 05:03:27] Set ATHENA_PROC_NUMBER=8
[2026-02-03 05:03:27] Set ATHENA_CORE_NUMBER=8
[2026-02-03 05:03:27] Starting ATLAS job with PandaID=6996985340
[2026-02-03 05:03:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 09:54:37]  *** The last 200 lines of the pilot log: ***
[2026-02-03 09:54:37] 2026-02-03 08:53:48,127 | INFO     | total number of processed events: 400 (read)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,129 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6996985340/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,130 | INFO     | extracted standard info from prmon json
[2026-02-03 09:54:37] 2026-02-03 08:53:48,130 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 09:54:37] 2026-02-03 08:53:48,130 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 09:54:37] 2026-02-03 08:53:48,131 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 09:54:37] 2026-02-03 08:53:48,131 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 09:54:37] 2026-02-03 08:53:48,137 | INFO     | fitting pss+swap vs Time
[2026-02-03 09:54:37] 2026-02-03 08:53:48,138 | INFO     | sum of square deviations: 6448679050.0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,140 | INFO     | sum of deviations: 78547207601.00003
[2026-02-03 09:54:37] 2026-02-03 08:53:48,141 | INFO     | mean x: 1770100453.0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,141 | INFO     | mean y: 2465608.7745454544
[2026-02-03 09:54:37] 2026-02-03 08:53:48,141 | INFO     | intersect: -21557988350.616596
[2026-02-03 09:54:37] 2026-02-03 08:53:48,141 | INFO     | chi2: 7.723087349274466
[2026-02-03 09:54:37] 2026-02-03 08:53:48,142 | INFO     | sum of square deviations: 6103286527.5
[2026-02-03 09:54:37] 2026-02-03 08:53:48,148 | INFO     | sum of deviations: 95245006976.99998
[2026-02-03 09:54:37] 2026-02-03 08:53:48,148 | INFO     | mean x: 1770100300.5
[2026-02-03 09:54:37] 2026-02-03 08:53:48,148 | INFO     | mean y: 2472862.7703703702
[2026-02-03 09:54:37] 2026-02-03 08:53:48,148 | INFO     | intersect: -27620876411.66893
[2026-02-03 09:54:37] 2026-02-03 08:53:48,149 | INFO     | chi2: 7.011708118734363
[2026-02-03 09:54:37] 2026-02-03 08:53:48,149 | INFO     | current chi2=7.011708118734363 (change=9.211073219402756 %)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,149 | INFO     | right removable region: 269
[2026-02-03 09:54:37] 2026-02-03 08:53:48,149 | INFO     | sum of square deviations: 6103286527.5
[2026-02-03 09:54:37] 2026-02-03 08:53:48,152 | INFO     | sum of deviations: -17834585707.500004
[2026-02-03 09:54:37] 2026-02-03 08:53:48,152 | INFO     | mean x: 1770100605.5
[2026-02-03 09:54:37] 2026-02-03 08:53:48,152 | INFO     | mean y: 2508139.7074074075
[2026-02-03 09:54:37] 2026-02-03 08:53:48,153 | INFO     | intersect: 5174969045.392357
[2026-02-03 09:54:37] 2026-02-03 08:53:48,153 | INFO     | chi2: 2.8492679529432343
[2026-02-03 09:54:37] 2026-02-03 08:53:48,153 | INFO     | current chi2=2.8492679529432343 (change=63.10713806427549 %)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,154 | INFO     | sum of square deviations: 5770452380.0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,156 | INFO     | sum of deviations: -74191870065.0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,157 | INFO     | mean x: 1770100758.0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,157 | INFO     | mean y: 2533872.879245283
[2026-02-03 09:54:37] 2026-02-03 08:53:48,157 | INFO     | intersect: 22761076321.763298
[2026-02-03 09:54:37] 2026-02-03 08:53:48,157 | INFO     | chi2: 1.0656191962284771
[2026-02-03 09:54:37] 2026-02-03 08:53:48,157 | INFO     | current chi2=1.0656191962284771 (change=62.600246314927496 %)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,158 | INFO     | sum of square deviations: 5449944045.0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,160 | INFO     | sum of deviations: -76722057558.50006
[2026-02-03 09:54:37] 2026-02-03 08:53:48,161 | INFO     | mean x: 1770100910.5
[2026-02-03 09:54:37] 2026-02-03 08:53:48,161 | INFO     | mean y: 2535037.2423076923
[2026-02-03 09:54:37] 2026-02-03 08:53:48,161 | INFO     | intersect: 24921283343.351635
[2026-02-03 09:54:37] 2026-02-03 08:53:48,161 | INFO     | chi2: 1.0194017089016723
[2026-02-03 09:54:37] 2026-02-03 08:53:48,162 | INFO     | current chi2=1.0194017089016723 (change=4.337148532081762 %)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,162 | INFO     | left removable region: 30
[2026-02-03 09:54:37] 2026-02-03 08:53:48,162 | INFO     | sum of square deviations: 4233158440.0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,164 | INFO     | sum of deviations: -34274235310.000015
[2026-02-03 09:54:37] 2026-02-03 08:53:48,164 | INFO     | mean x: 1770101185.0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,165 | INFO     | mean y: 2531394.3682008367
[2026-02-03 09:54:37] 2026-02-03 08:53:48,165 | INFO     | intersect: 14334351333.807999
[2026-02-03 09:54:37] 2026-02-03 08:53:48,165 | INFO     | chi2: 0.18683208782451233
[2026-02-03 09:54:37] 2026-02-03 08:53:48,165 | INFO     | current memory leak: -8.10 B/s (using 239 data points, chi2=0.19)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,166 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,166 | INFO     | ..............................
[2026-02-03 09:54:37] 2026-02-03 08:53:48,166 | INFO     | . Timing measurements:
[2026-02-03 09:54:37] 2026-02-03 08:53:48,167 | INFO     | . get job = 0 s
[2026-02-03 09:54:37] 2026-02-03 08:53:48,167 | INFO     | . initial setup = 128 s
[2026-02-03 09:54:37] 2026-02-03 08:53:48,167 | INFO     | . payload setup = 144 s
[2026-02-03 09:54:37] 2026-02-03 08:53:48,167 | INFO     | . stage-in = 0 s
[2026-02-03 09:54:37] 2026-02-03 08:53:48,167 | INFO     | . payload execution = 16863 s
[2026-02-03 09:54:37] 2026-02-03 08:53:48,167 | INFO     | . stage-out = 4 s
[2026-02-03 09:54:37] 2026-02-03 08:53:48,167 | INFO     | . log creation = 1 s
[2026-02-03 09:54:37] 2026-02-03 08:53:48,167 | INFO     | ..............................
[2026-02-03 09:54:37] 2026-02-03 08:53:48,290 | INFO     | 
[2026-02-03 09:54:37] 2026-02-03 08:53:48,291 | INFO     | job summary report
[2026-02-03 09:54:37] 2026-02-03 08:53:48,291 | INFO     | --------------------------------------------------
[2026-02-03 09:54:37] 2026-02-03 08:53:48,291 | INFO     | PanDA job id: 6996985340
[2026-02-03 09:54:37] 2026-02-03 08:53:48,291 | INFO     | task id: 48317892
[2026-02-03 09:54:37] 2026-02-03 08:53:48,291 | INFO     | errors: (none)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,291 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 09:54:37] 2026-02-03 08:53:48,291 | INFO     | pilot state: finished 
[2026-02-03 09:54:37] 2026-02-03 08:53:48,291 | INFO     | transexitcode: 0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,292 | INFO     | exeerrorcode: 0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,292 | INFO     | exeerrordiag: 
[2026-02-03 09:54:37] 2026-02-03 08:53:48,292 | INFO     | exitcode: 0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,292 | INFO     | exitmsg: OK
[2026-02-03 09:54:37] 2026-02-03 08:53:48,292 | INFO     | cpuconsumptiontime: 61612 s
[2026-02-03 09:54:37] 2026-02-03 08:53:48,292 | INFO     | nevents: 400
[2026-02-03 09:54:37] 2026-02-03 08:53:48,292 | INFO     | neventsw: 0
[2026-02-03 09:54:37] 2026-02-03 08:53:48,292 | INFO     | pid: 11114
[2026-02-03 09:54:37] 2026-02-03 08:53:48,292 | INFO     | pgrp: 11114
[2026-02-03 09:54:37] 2026-02-03 08:53:48,293 | INFO     | corecount: 8
[2026-02-03 09:54:37] 2026-02-03 08:53:48,293 | INFO     | event service: False
[2026-02-03 09:54:37] 2026-02-03 08:53:48,293 | INFO     | sizes: {0: 2277081, 1: 2277766, 2: 2278167, 3: 2278227, 13: 2278255, 17011: 2310281, 17012: 2310408, 17016: 2319518, 17018: 2319656}
[2026-02-03 09:54:37] 2026-02-03 08:53:48,293 | INFO     | --------------------------------------------------
[2026-02-03 09:54:37] 2026-02-03 08:53:48,293 | INFO     | 
[2026-02-03 09:54:37] 2026-02-03 08:53:48,293 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-02-03 09:54:37] 2026-02-03 08:53:48,393 | INFO     | time since job start (17031s) is within the limit (349056.0s)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,831 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,831 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,831 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,832 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,833 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,833 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 09:54:37] 2026-02-03 08:53:48,834 | INFO     | job 6996985340 has completed (purged errors)
[2026-02-03 09:54:37] 2026-02-03 08:53:48,834 | INFO     | overall cleanup function is called
[2026-02-03 09:54:37] 2026-02-03 08:53:49,842 | INFO     | --- collectZombieJob: --- 10, [11114]
[2026-02-03 09:54:37] 2026-02-03 08:53:49,843 | INFO     | zombie collector waiting for pid 11114
[2026-02-03 09:54:37] 2026-02-03 08:53:49,843 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 09:54:37] 2026-02-03 08:53:49,843 | INFO     | collected zombie processes
[2026-02-03 09:54:37] 2026-02-03 08:53:49,843 | INFO     | will attempt to kill all subprocesses of pid=11114
[2026-02-03 09:54:37] 2026-02-03 08:53:49,933 | INFO     | process IDs to be killed: [11114] (in reverse order)
[2026-02-03 09:54:37] 2026-02-03 08:53:51,096 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 09:54:37] 2026-02-03 08:53:51,096 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 09:54:37] 2026-02-03 08:53:51,099 | INFO     | did not find any defunct processes belonging to 11114
[2026-02-03 09:54:37] 2026-02-03 08:53:51,101 | INFO     | did not find any defunct processes belonging to 11114
[2026-02-03 09:54:37] 2026-02-03 08:53:51,101 | INFO     | ready for new job
[2026-02-03 09:54:37] 2026-02-03 08:53:51,101 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 09:54:37] 2026-02-03 08:53:51,103 | INFO     | **************************************
[2026-02-03 09:54:37] 2026-02-03 08:53:51,103 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 09:54:37] 2026-02-03 08:53:51,104 | INFO     | **************************************
[2026-02-03 09:54:37] 2026-02-03 08:53:51,104 | INFO     | 
[2026-02-03 09:54:37] 2026-02-03 08:53:51,104 | INFO     | pilot is running in a VM
[2026-02-03 09:54:37] 2026-02-03 08:53:51,104 | INFO     | architecture information:
[2026-02-03 09:54:37] 2026-02-03 08:53:51,105 | INFO     | executing command: cat /etc/os-release
[2026-02-03 09:54:37] 2026-02-03 08:53:51,384 | INFO     | cat /etc/os-release:
[2026-02-03 09:54:37] NAME="CentOS Linux"
[2026-02-03 09:54:37] VERSION="7 (Core)"
[2026-02-03 09:54:37] ID="centos"
[2026-02-03 09:54:37] ID_LIKE="rhel fedora"
[2026-02-03 09:54:37] VERSION_ID="7"
[2026-02-03 09:54:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 09:54:37] ANSI_COLOR="0;31"
[2026-02-03 09:54:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 09:54:37] HOME_URL="https://www.centos.org/"
[2026-02-03 09:54:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 09:54:37] 
[2026-02-03 09:54:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 09:54:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 09:54:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 09:54:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 09:54:37] 
[2026-02-03 09:54:37] 2026-02-03 08:53:51,384 | INFO     | **************************************
[2026-02-03 09:54:37] 2026-02-03 08:53:51,888 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-02-03 09:54:37] 2026-02-03 08:53:52,031 | INFO     | sufficient remaining disk space (494996029440 B)
[2026-02-03 09:54:37] 2026-02-03 08:53:52,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 09:54:37] 2026-02-03 08:53:52,032 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 09:54:37] 2026-02-03 08:53:52,032 | INFO     | update_server=False
[2026-02-03 09:54:37] 2026-02-03 08:53:52,032 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 09:54:37] 2026-02-03 08:53:52,032 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 09:54:37] 2026-02-03 08:53:52,032 | INFO     | aborting loop
[2026-02-03 09:54:37] 2026-02-03 08:53:52,039 | INFO     | all payload control threads have been joined
[2026-02-03 09:54:37] 2026-02-03 08:53:52,127 | INFO     | all job control threads have been joined
[2026-02-03 09:54:37] 2026-02-03 08:53:52,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 09:54:37] 2026-02-03 08:53:52,357 | INFO     | all data control threads have been joined
[2026-02-03 09:54:37] 2026-02-03 08:53:52,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 09:54:37] 2026-02-03 08:53:53,038 | INFO     | [job] retrieve thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:53,039 | INFO     | [job] job monitor thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:53,041 | INFO     | [payload] validate_post thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:53,046 | INFO     | [payload] control thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:53,117 | INFO     | [data] copytool_in thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:53,134 | INFO     | [job] control thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:53,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 09:54:37] 2026-02-03 08:53:53,364 | INFO     | [data] control thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:53,367 | INFO     | [job] validate thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:53,713 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:53,847 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:54,154 | INFO     | [payload] failed_post thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:54,311 | INFO     | [job] queue monitor thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:54,320 | INFO     | [data] copytool_out thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:54,508 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:53:56,939 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:54:03,066 | INFO     | job.realtimelogging is not enabled
[2026-02-03 09:54:37] 2026-02-03 08:54:04,073 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 09:54:37] 2026-02-03 08:54:21,554 | INFO     | PID=6664 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-03 09:54:37] 2026-02-03 08:54:21,554 | INFO     | .. there are 2 such processes running
[2026-02-03 09:54:37] 2026-02-03 08:54:21,555 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 09:54:37] 2026-02-03 08:54:21,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 09:54:37] 2026-02-03 08:54:21,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 09:54:37] 2026-02-03 08:54:26,130 | INFO     | [monitor] cgroup control has ended
[2026-02-03 09:54:37] 2026-02-03 08:54:27,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140218877736768)>', '<ExcThread(monitor, started 140218443220736)>']
[2026-02-03 09:54:37] 2026-02-03 08:54:27,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 09:54:37] 2026-02-03 08:54:27,591 | INFO     | [monitor] control thread has ended
[2026-02-03 09:54:37] 2026-02-03 08:54:32,163 | INFO     | all workflow threads have been joined
[2026-02-03 09:54:37] 2026-02-03 08:54:32,164 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 09:54:37] 2026-02-03 08:54:32,164 | INFO     | traces error code: 0
[2026-02-03 09:54:37] 2026-02-03 08:54:32,164 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 09:54:37] 2026-02-03 08:54:32,666 [wrapper] ==== pilot stdout END ====
[2026-02-03 09:54:37] 2026-02-03 08:54:32,792 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 09:54:37] 2026-02-03 08:54:32,890 [wrapper] pilotpid: 6664
[2026-02-03 09:54:37] 2026-02-03 08:54:32,991 [wrapper] Pilot exit status: 0
[2026-02-03 09:54:37] 2026-02-03 08:54:33,541 [wrapper] pandaids: 6996985340
[2026-02-03 09:54:37] 2026-02-03 08:54:34,309 [wrapper] cleanup supervisor_pilot 18460 6665
[2026-02-03 09:54:37] 2026-02-03 08:54:34,411 [wrapper] Test setup, not cleaning
[2026-02-03 09:54:37] 2026-02-03 08:54:34,511 [wrapper] apfmon messages muted
[2026-02-03 09:54:37] 2026-02-03 08:54:34,609 [wrapper] ==== wrapper stdout END ====
[2026-02-03 09:54:37] 2026-02-03 08:54:34,764 [wrapper] ==== wrapper stderr END ====
[2026-02-03 09:54:37]  *** Error codes and diagnostics ***
[2026-02-03 09:54:37]     "exeErrorCode": 0,
[2026-02-03 09:54:37]     "exeErrorDiag": "",
[2026-02-03 09:54:37]     "pilotErrorCode": 0,
[2026-02-03 09:54:37]     "pilotErrorDiag": "",
[2026-02-03 09:54:37]  *** Listing of results directory ***
[2026-02-03 09:54:37] total 669892
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc    584422 Feb  2 14:12 pilot3.tar.gz
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc      5111 Feb  2 14:12 queuedata.json
[2026-02-03 09:54:37] -rwx------. 1 boinc boinc     36322 Feb  2 14:12 runpilot2-wrapper.sh
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc       100 Feb  3 05:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 09:54:37] -rwxr-xr-x. 1 boinc boinc      7986 Feb  3 05:02 run_atlas
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc       105 Feb  3 05:02 job.xml
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc      6392 Feb  3 05:02 init_data.xml
[2026-02-03 09:54:37] -rw-r--r--. 2 boinc boinc 493861106 Feb  3 05:02 EVNT.48317889._000130.pool.root.1
[2026-02-03 09:54:37] -rw-r--r--. 2 boinc boinc     15845 Feb  3 05:02 start_atlas.sh
[2026-02-03 09:54:37] drwxrwx--x. 2 boinc boinc        68 Feb  3 05:02 shared
[2026-02-03 09:54:37] -rw-r--r--. 2 boinc boinc    597752 Feb  3 05:02 input.tar.gz
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc         0 Feb  3 05:02 boinc_lockfile
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc      2521 Feb  3 05:03 pandaJob.out
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc       415 Feb  3 05:09 workernode_map.json
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc   1009324 Feb  3 05:09 agis_schedconf.cvmfs.json
[2026-02-03 09:54:37] drwx------. 5 boinc boinc      4096 Feb  3 05:09 pilot3
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc 182340403 Feb  3 09:52 HITS.48317892._010291.pool.root.1
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc       531 Feb  3 09:52 boinc_task_state.xml
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc      1011 Feb  3 09:53 memory_monitor_summary.json
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc   1511668 Feb  3 09:53 agis_ddmendpoints.agis.ALL.json
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc    535693 Feb  3 09:53 log.48317892._010291.job.log.tgz.1
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc      6322 Feb  3 09:53 heartbeat.json
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc        95 Feb  3 09:54 pilot_heartbeat.json
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc      8192 Feb  3 09:54 boinc_mmap_file
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc        28 Feb  3 09:54 wrapper_checkpoint.txt
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc      4951 Feb  3 09:54 pilotlog.txt
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc   2384425 Feb  3 09:54 log.48317892._010291.job.log.1
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc       357 Feb  3 09:54 output.list
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc       620 Feb  3 09:54 runtime_log
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc   2938880 Feb  3 09:54 result.tar.gz
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc      8816 Feb  3 09:54 runtime_log.err
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc       656 Feb  3 09:54 7vGKDmau868n9Rq4apOajLDm4fhM0noT9bVooX4SDmLPSKDmIXW14m.diag
[2026-02-03 09:54:37] -rw-r--r--. 1 boinc boinc     20664 Feb  3 09:54 stderr.txt
[2026-02-03 09:54:37] HITS file was successfully produced:
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc 182340403 Feb  3 09:52 shared/HITS.pool.root.1
[2026-02-03 09:54:37]  *** Contents of shared directory: ***
[2026-02-03 09:54:37] total 663828
[2026-02-03 09:54:37] -rw-r--r--. 2 boinc boinc 493861106 Feb  3 05:02 ATLAS.root_0
[2026-02-03 09:54:37] -rw-r--r--. 2 boinc boinc     15845 Feb  3 05:02 start_atlas.sh
[2026-02-03 09:54:37] -rw-r--r--. 2 boinc boinc    597752 Feb  3 05:02 input.tar.gz
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc 182340403 Feb  3 09:52 HITS.pool.root.1
[2026-02-03 09:54:37] -rw-------. 1 boinc boinc   2938880 Feb  3 09:54 result.tar.gz
09:54:39 (2579): run_atlas exited; CPU time 61812.840110
09:54:39 (2579): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN