Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:00:22 (3821612): wrapper (7.7.26015): starting
01:00:22 (3821612): wrapper: running run_atlas (--nthreads 4)
[2026-02-03 01:00:22] Arguments: --nthreads 4
[2026-02-03 01:00:22] Threads: 4
[2026-02-03 01:00:22] Checking for CVMFS
[2026-02-03 01:00:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 01:00:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 01:00:22] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 01:00:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 01:00:23] 2.13.1.0 250437 7907 74528 155810 0 188 10155303 10240000 1822 130560 0 9724830 99.994 264027 345 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-03 01:00:23] CVMFS is ok
[2026-02-03 01:00:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 01:00:23] Checking for apptainer binary...
[2026-02-03 01:00:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 01:00:23] Running /usr/bin/apptainer --version
[2026-02-03 01:00:23] apptainer version 1.4.5
[2026-02-03 01:00:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 01:00:23] atlas6l2
[2026-02-03 01:00:23] apptainer works
[2026-02-03 01:00:23] Set ATHENA_PROC_NUMBER=4
[2026-02-03 01:00:23] Set ATHENA_CORE_NUMBER=4
[2026-02-03 01:00:23] Starting ATLAS job with PandaID=6996651480
[2026-02-03 01:00:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 02:36:46]  *** The last 200 lines of the pilot log: ***
[2026-02-03 02:36:46]  workdir=None
[2026-02-03 02:36:46] ]
[2026-02-03 02:36:46] 2026-02-03 01:35:45,578 | INFO     | transferring file log.48317892._010187.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996651480/log.48317892._010187.job.log.tgz.1 to /var/li
[2026-02-03 02:36:46] 2026-02-03 01:35:45,578 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996651480/log.48317892._010187.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-02-03 02:36:46] 2026-02-03 01:35:45,594 | INFO     | adding to output.list: log.48317892._010187.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/a3/log.48317892._010187.job.log.tg
[2026-02-03 02:36:46] 2026-02-03 01:35:45,596 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-03 02:36:46] 2026-02-03 01:35:45,596 | INFO     | summary of transferred files:
[2026-02-03 02:36:46] 2026-02-03 01:35:45,596 | INFO     |  -- lfn=log.48317892._010187.job.log.tgz.1, status_code=0, status=transferred
[2026-02-03 02:36:46] 2026-02-03 01:35:45,596 | INFO     | stage-out finished correctly
[2026-02-03 02:36:46] 2026-02-03 01:35:46,724 | INFO     | time since job start (5714s) is within the limit (349056.0s)
[2026-02-03 02:36:46] 2026-02-03 01:35:48,730 | INFO     | time since job start (5716s) is within the limit (349056.0s)
[2026-02-03 02:36:46] 2026-02-03 01:35:48,794 | WARNING  | process 3830075 can no longer be monitored (due to stat problems) - aborting
[2026-02-03 02:36:46] 2026-02-03 01:35:48,794 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996651480/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 02:36:46] 2026-02-03 01:35:48,795 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996651480/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 02:36:46] 2026-02-03 01:35:48,795 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-03 02:36:46] 2026-02-03 01:35:48,795 | WARNING  | maxPSS not found in memory monitor output
[2026-02-03 02:36:46] 2026-02-03 01:35:48,795 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2600624 B
[2026-02-03 02:36:46] 2026-02-03 01:35:48,795 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16341 B
[2026-02-03 02:36:46] 2026-02-03 01:35:48,796 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/0
[2026-02-03 02:36:46] 2026-02-03 01:35:48,807 | INFO     | sufficient remaining disk space (152514330624 B)
[2026-02-03 02:36:46] 2026-02-03 01:35:48,807 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-02-03 02:36:46] 2026-02-03 01:35:48,808 | INFO     | size of work directory /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996651480: 2905396 B (within 5033164800 B limit)
[2026-02-03 02:36:46] 2026-02-03 01:35:48,808 | INFO     | pfn file=/var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996651480/HITS.48317892._010187.pool.root.1 does not exist (skip from workdir size calculation)
[2026-02-03 02:36:46] 2026-02-03 01:35:48,808 | INFO     | total size of present files: 0 B (workdir size: 2905396 B)
[2026-02-03 02:36:46] 2026-02-03 01:35:48,808 | INFO     | output file size check: skipping output file /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996651480/HITS.48317892._010187.pool.root.1 since it does not exist
[2026-02-03 02:36:46] 2026-02-03 01:35:48,823 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-03 02:36:46] 2026-02-03 01:35:48,944 | INFO     | number of running child processes to parent process 3830075: 1
[2026-02-03 02:36:46] 2026-02-03 01:35:48,944 | INFO     | maximum number of monitored processes: 6
[2026-02-03 02:36:46] 2026-02-03 01:35:49,731 | INFO     | job 6996651480 has state=finished
[2026-02-03 02:36:46] 2026-02-03 01:35:49,731 | INFO     | preparing for final server update for job 6996651480 in state='finished'
[2026-02-03 02:36:46] 2026-02-03 01:35:50,410 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,411 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996651480/jobReport.json
[2026-02-03 02:36:46] 2026-02-03 01:35:50,414 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/0/workernode_map.json
[2026-02-03 02:36:46] 2026-02-03 01:35:50,415 | INFO     | this job has now completed (state=finished)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,415 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,415 | INFO     | log transfer has been attempted: DONE
[2026-02-03 02:36:46] 2026-02-03 01:35:50,415 | INFO     | job 6996651480 has finished - writing final server update
[2026-02-03 02:36:46] 2026-02-03 01:35:50,416 | INFO     | total number of processed events: 400 (read)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,420 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996651480/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,420 | INFO     | extracted standard info from prmon json
[2026-02-03 02:36:46] 2026-02-03 01:35:50,420 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 02:36:46] 2026-02-03 01:35:50,420 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 02:36:46] 2026-02-03 01:35:50,420 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 02:36:46] 2026-02-03 01:35:50,420 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 02:36:46] 2026-02-03 01:35:50,421 | INFO     | fitting pss+swap vs Time
[2026-02-03 02:36:46] 2026-02-03 01:35:50,421 | INFO     | sum of square deviations: 204163828.0
[2026-02-03 02:36:46] 2026-02-03 01:35:50,421 | INFO     | sum of deviations: -2941168069.999999
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | mean x: 1770079778.0
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | mean y: 2344399.0804597703
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | intersect: 25501974648.990776
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | chi2: 0.01631067772319113
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | current memory leak: -14.41 B/s (using 87 data points, chi2=0.02)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | could have reported an average CPU frequency of 2400 MHz (7 samples)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | ..............................
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | . Timing measurements:
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | . get job = 0 s
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | . initial setup = 3 s
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | . payload setup = 4 s
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | . stage-in = 0 s
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | . payload execution = 5694 s
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | . stage-out = 0 s
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | . log creation = 0 s
[2026-02-03 02:36:46] 2026-02-03 01:35:50,422 | INFO     | ..............................
[2026-02-03 02:36:46] 2026-02-03 01:35:50,558 | INFO     | 
[2026-02-03 02:36:46] 2026-02-03 01:35:50,558 | INFO     | job summary report
[2026-02-03 02:36:46] 2026-02-03 01:35:50,559 | INFO     | --------------------------------------------------
[2026-02-03 02:36:46] 2026-02-03 01:35:50,559 | INFO     | PanDA job id: 6996651480
[2026-02-03 02:36:46] 2026-02-03 01:35:50,559 | INFO     | task id: 48317892
[2026-02-03 02:36:46] 2026-02-03 01:35:50,559 | INFO     | errors: (none)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,559 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 02:36:46] 2026-02-03 01:35:50,559 | INFO     | pilot state: finished 
[2026-02-03 02:36:46] 2026-02-03 01:35:50,560 | INFO     | transexitcode: 0
[2026-02-03 02:36:46] 2026-02-03 01:35:50,560 | INFO     | exeerrorcode: 0
[2026-02-03 02:36:46] 2026-02-03 01:35:50,560 | INFO     | exeerrordiag: 
[2026-02-03 02:36:46] 2026-02-03 01:35:50,560 | INFO     | exitcode: 0
[2026-02-03 02:36:46] 2026-02-03 01:35:50,560 | INFO     | exitmsg: OK
[2026-02-03 02:36:46] 2026-02-03 01:35:50,560 | INFO     | cpuconsumptiontime: 21722 s
[2026-02-03 02:36:46] 2026-02-03 01:35:50,560 | INFO     | nevents: 400
[2026-02-03 02:36:46] 2026-02-03 01:35:50,561 | INFO     | neventsw: 0
[2026-02-03 02:36:46] 2026-02-03 01:35:50,561 | INFO     | pid: 3830075
[2026-02-03 02:36:46] 2026-02-03 01:35:50,561 | INFO     | pgrp: 3830075
[2026-02-03 02:36:46] 2026-02-03 01:35:50,561 | INFO     | corecount: 4
[2026-02-03 02:36:46] 2026-02-03 01:35:50,561 | INFO     | event service: False
[2026-02-03 02:36:46] 2026-02-03 01:35:50,561 | INFO     | sizes: {0: 2277800, 1: 2278261, 11: 2278261, 5702: 2305004, 5703: 2314030, 5706: 2314114, 5708: 2314436}
[2026-02-03 02:36:46] 2026-02-03 01:35:50,561 | INFO     | --------------------------------------------------
[2026-02-03 02:36:46] 2026-02-03 01:35:50,562 | INFO     | 
[2026-02-03 02:36:46] 2026-02-03 01:35:50,562 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/0
[2026-02-03 02:36:46] 2026-02-03 01:35:50,582 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,583 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,583 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,583 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,584 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,584 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,584 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,584 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,584 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,584 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,584 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,584 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,585 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,585 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,585 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,585 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,585 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,585 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,585 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,586 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 02:36:46] 2026-02-03 01:35:50,586 | INFO     | job 6996651480 has completed (purged errors)
[2026-02-03 02:36:46] 2026-02-03 01:35:50,586 | INFO     | overall cleanup function is called
[2026-02-03 02:36:46] 2026-02-03 01:35:51,595 | INFO     | --- collectZombieJob: --- 10, [3830075]
[2026-02-03 02:36:46] 2026-02-03 01:35:51,595 | INFO     | zombie collector waiting for pid 3830075
[2026-02-03 02:36:46] 2026-02-03 01:35:51,595 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 02:36:46] 2026-02-03 01:35:51,595 | INFO     | collected zombie processes
[2026-02-03 02:36:46] 2026-02-03 01:35:51,596 | INFO     | will attempt to kill all subprocesses of pid=3830075
[2026-02-03 02:36:46] 2026-02-03 01:35:51,690 | INFO     | process IDs to be killed: [3830075] (in reverse order)
[2026-02-03 02:36:46] 2026-02-03 01:35:51,725 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 02:36:46] 2026-02-03 01:35:51,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 02:36:46] 2026-02-03 01:35:51,727 | INFO     | did not find any defunct processes belonging to 3830075
[2026-02-03 02:36:46] 2026-02-03 01:35:51,729 | INFO     | did not find any defunct processes belonging to 3830075
[2026-02-03 02:36:46] 2026-02-03 01:35:51,730 | INFO     | ready for new job
[2026-02-03 02:36:46] 2026-02-03 01:35:51,730 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 02:36:46] 2026-02-03 01:35:51,731 | INFO     | **************************************
[2026-02-03 02:36:46] 2026-02-03 01:35:51,731 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 02:36:46] 2026-02-03 01:35:51,731 | INFO     | **************************************
[2026-02-03 02:36:46] 2026-02-03 01:35:51,731 | INFO     | 
[2026-02-03 02:36:46] 2026-02-03 01:35:51,731 | INFO     | pilot is running in a VM
[2026-02-03 02:36:46] 2026-02-03 01:35:51,731 | INFO     | architecture information:
[2026-02-03 02:36:46] 2026-02-03 01:35:51,731 | INFO     | executing command: cat /etc/os-release
[2026-02-03 02:36:46] 2026-02-03 01:35:51,743 | INFO     | cat /etc/os-release:
[2026-02-03 02:36:46] NAME="CentOS Linux"
[2026-02-03 02:36:46] VERSION="7 (Core)"
[2026-02-03 02:36:46] ID="centos"
[2026-02-03 02:36:46] ID_LIKE="rhel fedora"
[2026-02-03 02:36:46] VERSION_ID="7"
[2026-02-03 02:36:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 02:36:46] ANSI_COLOR="0;31"
[2026-02-03 02:36:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 02:36:46] HOME_URL="https://www.centos.org/"
[2026-02-03 02:36:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 02:36:46] 
[2026-02-03 02:36:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 02:36:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 02:36:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 02:36:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 02:36:46] 
[2026-02-03 02:36:46] 2026-02-03 01:35:51,743 | INFO     | **************************************
[2026-02-03 02:36:46] 2026-02-03 01:35:52,247 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/0
[2026-02-03 02:36:46] 2026-02-03 01:35:52,263 | INFO     | sufficient remaining disk space (152518524928 B)
[2026-02-03 02:36:46] 2026-02-03 01:35:52,263 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 02:36:46] 2026-02-03 01:35:52,263 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 02:36:46] 2026-02-03 01:35:52,264 | INFO     | update_server=False
[2026-02-03 02:36:46] 2026-02-03 01:35:52,264 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 02:36:46] 2026-02-03 01:35:52,264 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 02:36:46] 2026-02-03 01:35:52,388 | INFO     | all job control threads have been joined
[2026-02-03 02:36:46] 2026-02-03 01:35:52,453 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 02:36:46] 2026-02-03 01:35:52,453 | INFO     | aborting loop
[2026-02-03 02:36:46] 2026-02-03 01:35:52,986 | INFO     | all data control threads have been joined
[2026-02-03 02:36:46] 2026-02-03 01:35:53,158 | INFO     | all payload control threads have been joined
[2026-02-03 02:36:46] 2026-02-03 01:35:53,268 | INFO     | [job] queue monitor thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:53,269 | INFO     | [job] retrieve thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:53,394 | INFO     | [job] control thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:53,395 | INFO     | [job] validate thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:53,459 | INFO     | [job] job monitor thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:53,496 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:53,504 | INFO     | [payload] failed_post thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:53,655 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 02:36:46] 2026-02-03 01:35:53,879 | INFO     | [data] copytool_in thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:53,992 | INFO     | [data] control thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:54,164 | INFO     | [payload] control thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:54,169 | INFO     | [payload] validate_post thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:54,573 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:54,585 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:54,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 02:36:46] 2026-02-03 01:35:55,660 | INFO     | [data] copytool_out thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:35:58,879 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:36:03,166 | INFO     | job.realtimelogging is not enabled
[2026-02-03 02:36:46] 2026-02-03 01:36:04,172 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 02:36:46] 2026-02-03 01:36:21,930 | INFO     | PID=3825588 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 02:36:46] 2026-02-03 01:36:21,930 | INFO     | .. there are 3 such processes running
[2026-02-03 02:36:46] 2026-02-03 01:36:21,930 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 02:36:46] 2026-02-03 01:36:21,930 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 02:36:46] 2026-02-03 01:36:21,930 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 02:36:46] 2026-02-03 01:36:40,254 | INFO     | [monitor] cgroup control has ended
[2026-02-03 02:36:46] 2026-02-03 01:36:40,915 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125784282994496)>', '<ExcThread(monitor, started 125783771158272)>']
[2026-02-03 02:36:46] 2026-02-03 01:36:41,025 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 02:36:46] 2026-02-03 01:36:41,026 | INFO     | [monitor] control thread has ended
[2026-02-03 02:36:46] 2026-02-03 01:36:45,940 | INFO     | all workflow threads have been joined
[2026-02-03 02:36:46] 2026-02-03 01:36:45,940 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 02:36:46] 2026-02-03 01:36:45,941 | INFO     | traces error code: 0
[2026-02-03 02:36:46] 2026-02-03 01:36:45,941 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 02:36:46] 2026-02-03 01:36:46,010 [wrapper] ==== pilot stdout END ====
[2026-02-03 02:36:46] 2026-02-03 01:36:46,012 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 02:36:46] 2026-02-03 01:36:46,015 [wrapper] pilotpid: 3825588
[2026-02-03 02:36:46] 2026-02-03 01:36:46,018 [wrapper] Pilot exit status: 0
[2026-02-03 02:36:46] 2026-02-03 01:36:46,030 [wrapper] pandaids: 6996651480
[2026-02-03 02:36:46] 2026-02-03 01:36:46,062 [wrapper] cleanup supervisor_pilot 3865782 3825589
[2026-02-03 02:36:46] 2026-02-03 01:36:46,064 [wrapper] Test setup, not cleaning
[2026-02-03 02:36:46] 2026-02-03 01:36:46,067 [wrapper] apfmon messages muted
[2026-02-03 02:36:46] 2026-02-03 01:36:46,071 [wrapper] ==== wrapper stdout END ====
[2026-02-03 02:36:46] 2026-02-03 01:36:46,073 [wrapper] ==== wrapper stderr END ====
[2026-02-03 02:36:46]  *** Error codes and diagnostics ***
[2026-02-03 02:36:46]     "exeErrorCode": 0,
[2026-02-03 02:36:46]     "exeErrorDiag": "",
[2026-02-03 02:36:46]     "pilotErrorCode": 0,
[2026-02-03 02:36:46]     "pilotErrorDiag": "",
[2026-02-03 02:36:46]  *** Listing of results directory ***
[2026-02-03 02:36:46] insgesamt 677336
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc    584422 Feb  2 11:55 pilot3.tar.gz
[2026-02-03 02:36:46] -rwx------ 1 yeti boinc     36322 Feb  2 11:59 runpilot2-wrapper.sh
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc      5111 Feb  2 12:03 queuedata.json
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc       100 Feb  3 01:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 02:36:46] -rwxr-xr-x 1 yeti boinc      7986 Feb  3 01:00 run_atlas
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc       105 Feb  3 01:00 job.xml
[2026-02-03 02:36:46] -rw-r--r-- 2 yeti boinc 499270915 Feb  3 01:00 EVNT.48317889._000196.pool.root.1
[2026-02-03 02:36:46] -rw-r--r-- 2 yeti boinc     15845 Feb  3 01:00 start_atlas.sh
[2026-02-03 02:36:46] drwxrwx--x 2 yeti boinc      4096 Feb  3 01:00 shared
[2026-02-03 02:36:46] -rw-r--r-- 2 yeti boinc    597759 Feb  3 01:00 input.tar.gz
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc      6620 Feb  3 01:00 init_data.xml
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc         0 Feb  3 01:00 boinc_setup_complete
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc         0 Feb  3 01:00 boinc_lockfile
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc      2520 Feb  3 01:00 pandaJob.out
[2026-02-03 02:36:46] -rw------- 1 yeti boinc        52 Feb  3 01:00 setup.sh.local
[2026-02-03 02:36:46] -rw------- 1 yeti boinc   1009316 Feb  3 01:00 agis_schedconf.cvmfs.json
[2026-02-03 02:36:46] -rw------- 1 yeti boinc   1511668 Feb  3 01:00 agis_ddmendpoints.agis.ALL.json
[2026-02-03 02:36:46] -rw------- 1 yeti boinc       419 Feb  3 01:00 workernode_map.json
[2026-02-03 02:36:46] drwx------ 5 yeti boinc      4096 Feb  3 01:00 pilot3
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc       530 Feb  3 02:35 boinc_task_state.xml
[2026-02-03 02:36:46] -rw------- 1 yeti boinc 188091482 Feb  3 02:35 HITS.48317892._010187.pool.root.1
[2026-02-03 02:36:46] -rw------- 1 yeti boinc      1029 Feb  3 02:35 memory_monitor_summary.json
[2026-02-03 02:36:46] -rw------- 1 yeti boinc    288393 Feb  3 02:35 log.48317892._010187.job.log.tgz.1
[2026-02-03 02:36:46] -rw------- 1 yeti boinc      6316 Feb  3 02:35 heartbeat.json
[2026-02-03 02:36:46] -rw------- 1 yeti boinc        95 Feb  3 02:36 pilot_heartbeat.json
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc      8192 Feb  3 02:36 boinc_mmap_file
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc        27 Feb  3 02:36 wrapper_checkpoint.txt
[2026-02-03 02:36:46] -rw------- 1 yeti boinc      4968 Feb  3 02:36 pilotlog.txt
[2026-02-03 02:36:46] -rw------- 1 yeti boinc    855382 Feb  3 02:36 log.48317892._010187.job.log.1
[2026-02-03 02:36:46] -rw------- 1 yeti boinc       357 Feb  3 02:36 output.list
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc       620 Feb  3 02:36 runtime_log
[2026-02-03 02:36:46] -rw------- 1 yeti boinc   1157120 Feb  3 02:36 result.tar.gz
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc      9544 Feb  3 02:36 runtime_log.err
[2026-02-03 02:36:46] -rw------- 1 yeti boinc       639 Feb  3 02:36 EKrLDmrp668nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmLjSKDm20ijum.diag
[2026-02-03 02:36:46] -rw-r--r-- 1 yeti boinc     22379 Feb  3 02:36 stderr.txt
[2026-02-03 02:36:46] HITS file was successfully produced:
[2026-02-03 02:36:46] -rw------- 1 yeti boinc 188091482 Feb  3 02:35 shared/HITS.pool.root.1
[2026-02-03 02:36:46]  *** Contents of shared directory: ***
[2026-02-03 02:36:46] insgesamt 672996
[2026-02-03 02:36:46] -rw-r--r-- 2 yeti boinc 499270915 Feb  3 01:00 ATLAS.root_0
[2026-02-03 02:36:46] -rw-r--r-- 2 yeti boinc     15845 Feb  3 01:00 start_atlas.sh
[2026-02-03 02:36:46] -rw-r--r-- 2 yeti boinc    597759 Feb  3 01:00 input.tar.gz
[2026-02-03 02:36:46] -rw------- 1 yeti boinc 188091482 Feb  3 02:35 HITS.pool.root.1
[2026-02-03 02:36:46] -rw------- 1 yeti boinc   1157120 Feb  3 02:36 result.tar.gz
02:36:47 (3821612): run_atlas exited; CPU time 21790.300551
02:36:47 (3821612): called boinc_finish(0)

</stderr_txt>
]]>

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