Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:23:42 (2013497): wrapper (7.7.26015): starting
12:23:42 (2013497): wrapper: running run_atlas (--nthreads 8)
[2026-02-02 12:23:42] Arguments: --nthreads 8
[2026-02-02 12:23:42] Threads: 8
[2026-02-02 12:23:42] Checking for CVMFS
[2026-02-02 12:23:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 12:23:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 12:23:43] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 12:23:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 12:23:44] 2.13.3.0 16090 128217 456136 155794 2 977 18573422 32935937 24856 16776704 0 1306277733 99.559 1495388110 52869 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-02 12:23:44] CVMFS is ok
[2026-02-02 12:23:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 12:23:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 12:23:44] Further information can be found at the LHC@home message board.
[2026-02-02 12:23:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 12:23:44] Checking for apptainer binary...
[2026-02-02 12:23:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 12:23:44] Running /usr/bin/apptainer --version
[2026-02-02 12:23:44] apptainer version 1.4.5-2.el9
[2026-02-02 12:23:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 12:23:45] c7-9-15.aglt2.org
[2026-02-02 12:23:45] apptainer works
[2026-02-02 12:23:45] Set ATHENA_PROC_NUMBER=8
[2026-02-02 12:23:45] Set ATHENA_CORE_NUMBER=8
[2026-02-02 12:23:45] Starting ATLAS job with PandaID=6985634758
[2026-02-02 12:23:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 14:03:48]  *** The last 200 lines of the pilot log: ***
[2026-02-02 14:03:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-02 14:03:48]  is_altstaged=None
[2026-02-02 14:03:48]  is_tar=False
[2026-02-02 14:03:48]  lfn=log.48318010._004644.job.log.tgz.1
[2026-02-02 14:03:48]  mtime=0
[2026-02-02 14:03:48]  protocol_id=None
[2026-02-02 14:03:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-02 14:03:48]  replicas=None
[2026-02-02 14:03:48]  scope=mc23_13p6TeV
[2026-02-02 14:03:48]  status=None
[2026-02-02 14:03:48]  status_code=0
[2026-02-02 14:03:48]  storage_token=
[2026-02-02 14:03:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6985634758/log.48318010._004644.job.log.tgz.1
[2026-02-02 14:03:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/4d/log.48318010._004644.job.log.tgz.1
[2026-02-02 14:03:48]  workdir=None
[2026-02-02 14:03:48] ]
[2026-02-02 14:03:48] 2026-02-02 19:03:11,421 | INFO     | transferring file log.48318010._004644.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6985634758/log.48318010._004644.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-02 14:03:48] 2026-02-02 19:03:11,421 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6985634758/log.48318010._004644.job.log.tgz.1 /tmp/boinchome/slots/0/log.48318010._004644.job
[2026-02-02 14:03:48] 2026-02-02 19:03:11,449 | INFO     | adding to output.list: log.48318010._004644.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/4d/log.48318010._004644.job.log.tg
[2026-02-02 14:03:48] 2026-02-02 19:03:11,450 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-02 14:03:48] 2026-02-02 19:03:11,450 | INFO     | summary of transferred files:
[2026-02-02 14:03:48] 2026-02-02 19:03:11,450 | INFO     |  -- lfn=log.48318010._004644.job.log.tgz.1, status_code=0, status=transferred
[2026-02-02 14:03:48] 2026-02-02 19:03:11,450 | INFO     | stage-out finished correctly
[2026-02-02 14:03:48] 2026-02-02 19:03:11,790 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-02 14:03:48] 2026-02-02 19:03:11,827 | INFO     | PID=2018122 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-02 14:03:48] 2026-02-02 19:03:11,828 | INFO     | .. there are 29 such processes running
[2026-02-02 14:03:48] 2026-02-02 19:03:12,091 | INFO     | monitor loop #406: job 0:6985634758 is in state 'finished'
[2026-02-02 14:03:48] 2026-02-02 19:03:12,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-02 14:03:48] 2026-02-02 19:03:12,215 | INFO     | job 6985634758 has state=finished
[2026-02-02 14:03:48] 2026-02-02 19:03:12,216 | INFO     | preparing for final server update for job 6985634758 in state='finished'
[2026-02-02 14:03:48] 2026-02-02 19:03:12,216 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6985634758/jobReport.json
[2026-02-02 14:03:48] 2026-02-02 19:03:12,228 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-02 14:03:48] 2026-02-02 19:03:12,228 | INFO     | this job has now completed (state=finished)
[2026-02-02 14:03:48] 2026-02-02 19:03:12,228 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 14:03:48] 2026-02-02 19:03:12,228 | INFO     | log transfer has been attempted: DONE
[2026-02-02 14:03:48] 2026-02-02 19:03:12,228 | INFO     | job 6985634758 has finished - writing final server update
[2026-02-02 14:03:48] 2026-02-02 19:03:12,229 | INFO     | total number of processed events: 400 (read)
[2026-02-02 14:03:48] 2026-02-02 19:03:12,256 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6985634758/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 14:03:48] 2026-02-02 19:03:12,261 | INFO     | extracted standard info from prmon json
[2026-02-02 14:03:48] 2026-02-02 19:03:12,261 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 14:03:48] 2026-02-02 19:03:12,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 14:03:48] 2026-02-02 19:03:12,261 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 14:03:48] 2026-02-02 19:03:12,261 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 14:03:48] 2026-02-02 19:03:12,262 | INFO     | fitting pss+swap vs Time
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | sum of square deviations: 211293083.89772764
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | sum of deviations: 18436884020.27272
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | mean x: 1770056177.534091
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | mean y: 2461623.909090909
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | intersect: -154448028910.6477
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | chi2: 1.9438323361023524
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | current memory leak: 87.26 B/s (using 88 data points, chi2=1.94)
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | could have reported an average CPU frequency of 3800 MHz (7 samples)
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | ..............................
[2026-02-02 14:03:48] 2026-02-02 19:03:12,263 | INFO     | . Timing measurements:
[2026-02-02 14:03:48] 2026-02-02 19:03:12,264 | INFO     | . get job = 0 s
[2026-02-02 14:03:48] 2026-02-02 19:03:12,264 | INFO     | . initial setup = 37 s
[2026-02-02 14:03:48] 2026-02-02 19:03:12,264 | INFO     | . payload setup = 51 s
[2026-02-02 14:03:48] 2026-02-02 19:03:12,264 | INFO     | . stage-in = 0 s
[2026-02-02 14:03:48] 2026-02-02 19:03:12,264 | INFO     | . payload execution = 5794 s
[2026-02-02 14:03:48] 2026-02-02 19:03:12,264 | INFO     | . stage-out = 0 s
[2026-02-02 14:03:48] 2026-02-02 19:03:12,264 | INFO     | . log creation = 0 s
[2026-02-02 14:03:48] 2026-02-02 19:03:12,264 | INFO     | ..............................
[2026-02-02 14:03:48] 2026-02-02 19:03:12,828 | INFO     | time since job start (5864s) is within the limit (349056.0s)
[2026-02-02 14:03:48] 2026-02-02 19:03:12,868 | INFO     | 
[2026-02-02 14:03:48] 2026-02-02 19:03:12,868 | INFO     | job summary report
[2026-02-02 14:03:48] 2026-02-02 19:03:12,868 | INFO     | --------------------------------------------------
[2026-02-02 14:03:48] 2026-02-02 19:03:12,868 | INFO     | PanDA job id: 6985634758
[2026-02-02 14:03:48] 2026-02-02 19:03:12,868 | INFO     | task id: 48318010
[2026-02-02 14:03:48] 2026-02-02 19:03:12,868 | INFO     | errors: (none)
[2026-02-02 14:03:48] 2026-02-02 19:03:12,868 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 14:03:48] 2026-02-02 19:03:12,868 | INFO     | pilot state: finished 
[2026-02-02 14:03:48] 2026-02-02 19:03:12,869 | INFO     | transexitcode: 0
[2026-02-02 14:03:48] 2026-02-02 19:03:12,869 | INFO     | exeerrorcode: 0
[2026-02-02 14:03:48] 2026-02-02 19:03:12,869 | INFO     | exeerrordiag: 
[2026-02-02 14:03:48] 2026-02-02 19:03:12,869 | INFO     | exitcode: 0
[2026-02-02 14:03:48] 2026-02-02 19:03:12,870 | INFO     | exitmsg: OK
[2026-02-02 14:03:48] 2026-02-02 19:03:12,870 | INFO     | cpuconsumptiontime: 23604 s
[2026-02-02 14:03:48] 2026-02-02 19:03:12,870 | INFO     | nevents: 400
[2026-02-02 14:03:48] 2026-02-02 19:03:12,870 | INFO     | neventsw: 0
[2026-02-02 14:03:48] 2026-02-02 19:03:12,870 | INFO     | pid: 2032286
[2026-02-02 14:03:48] 2026-02-02 19:03:12,870 | INFO     | pgrp: 2032286
[2026-02-02 14:03:48] 2026-02-02 19:03:12,870 | INFO     | corecount: 8
[2026-02-02 14:03:48] 2026-02-02 19:03:12,870 | INFO     | event service: False
[2026-02-02 14:03:48] 2026-02-02 19:03:12,871 | INFO     | sizes: {0: 2277182, 1: 2277867, 2: 2278328, 13: 2278328, 5849: 2305134, 5851: 2314454}
[2026-02-02 14:03:48] 2026-02-02 19:03:12,871 | INFO     | --------------------------------------------------
[2026-02-02 14:03:48] 2026-02-02 19:03:12,871 | INFO     | 
[2026-02-02 14:03:48] 2026-02-02 19:03:12,872 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-02 14:03:48] 2026-02-02 19:03:13,001 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,001 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,001 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,001 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,001 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,001 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,001 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,001 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | job 6985634758 has completed (purged errors)
[2026-02-02 14:03:48] 2026-02-02 19:03:13,002 | INFO     | overall cleanup function is called
[2026-02-02 14:03:48] 2026-02-02 19:03:14,010 | INFO     | --- collectZombieJob: --- 10, [2032286]
[2026-02-02 14:03:48] 2026-02-02 19:03:14,010 | INFO     | zombie collector waiting for pid 2032286
[2026-02-02 14:03:48] 2026-02-02 19:03:14,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 14:03:48] 2026-02-02 19:03:14,010 | INFO     | collected zombie processes
[2026-02-02 14:03:48] 2026-02-02 19:03:14,010 | INFO     | will attempt to kill all subprocesses of pid=2032286
[2026-02-02 14:03:48] 2026-02-02 19:03:14,566 | INFO     | process IDs to be killed: [2032286] (in reverse order)
[2026-02-02 14:03:48] 2026-02-02 19:03:14,749 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 14:03:48] 2026-02-02 19:03:14,749 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 14:03:48] 2026-02-02 19:03:14,767 | INFO     | did not find any defunct processes belonging to 2032286
[2026-02-02 14:03:48] 2026-02-02 19:03:14,785 | INFO     | did not find any defunct processes belonging to 2032286
[2026-02-02 14:03:48] 2026-02-02 19:03:14,785 | INFO     | ready for new job
[2026-02-02 14:03:48] 2026-02-02 19:03:14,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 14:03:48] 2026-02-02 19:03:14,787 | INFO     | **************************************
[2026-02-02 14:03:48] 2026-02-02 19:03:14,787 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 14:03:48] 2026-02-02 19:03:14,787 | INFO     | **************************************
[2026-02-02 14:03:48] 2026-02-02 19:03:14,787 | INFO     | 
[2026-02-02 14:03:48] 2026-02-02 19:03:14,791 | INFO     | architecture information:
[2026-02-02 14:03:48] 2026-02-02 19:03:14,792 | INFO     | executing command: cat /etc/os-release
[2026-02-02 14:03:48] 2026-02-02 19:03:14,841 | INFO     | cat /etc/os-release:
[2026-02-02 14:03:48] NAME="CentOS Linux"
[2026-02-02 14:03:48] VERSION="7 (Core)"
[2026-02-02 14:03:48] ID="centos"
[2026-02-02 14:03:48] ID_LIKE="rhel fedora"
[2026-02-02 14:03:48] VERSION_ID="7"
[2026-02-02 14:03:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 14:03:48] ANSI_COLOR="0;31"
[2026-02-02 14:03:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 14:03:48] HOME_URL="https://www.centos.org/"
[2026-02-02 14:03:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 14:03:48] 
[2026-02-02 14:03:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 14:03:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 14:03:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 14:03:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 14:03:48] 
[2026-02-02 14:03:48] 2026-02-02 19:03:14,841 | INFO     | **************************************
[2026-02-02 14:03:48] 2026-02-02 19:03:15,344 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-02 14:03:48] 2026-02-02 19:03:15,517 | INFO     | sufficient remaining disk space (70341623808 B)
[2026-02-02 14:03:48] 2026-02-02 19:03:15,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 14:03:48] 2026-02-02 19:03:15,517 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 14:03:48] 2026-02-02 19:03:15,517 | INFO     | update_server=False
[2026-02-02 14:03:48] 2026-02-02 19:03:15,517 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 14:03:48] 2026-02-02 19:03:15,518 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 14:03:48] 2026-02-02 19:03:15,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 14:03:48] 2026-02-02 19:03:15,603 | INFO     | aborting loop
[2026-02-02 14:03:48] 2026-02-02 19:03:15,611 | INFO     | all data control threads have been joined
[2026-02-02 14:03:48] 2026-02-02 19:03:15,780 | INFO     | all payload control threads have been joined
[2026-02-02 14:03:48] 2026-02-02 19:03:16,522 | INFO     | [job] retrieve thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:16,608 | INFO     | [job] job monitor thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:16,609 | INFO     | [job] validate thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:16,618 | INFO     | [data] control thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:16,719 | INFO     | [data] copytool_in thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:16,785 | INFO     | [payload] control thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:17,017 | INFO     | all job control threads have been joined
[2026-02-02 14:03:48] 2026-02-02 19:03:17,221 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:17,225 | INFO     | [payload] failed_post thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:17,358 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:17,390 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 14:03:48] 2026-02-02 19:03:17,525 | INFO     | [data] copytool_out thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:17,796 | INFO     | [payload] validate_post thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:17,883 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 14:03:48] 2026-02-02 19:03:17,927 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:18,023 | INFO     | [job] control thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:18,398 | INFO     | [job] queue monitor thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:21,893 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:25,913 | INFO     | job.realtimelogging is not enabled
[2026-02-02 14:03:48] 2026-02-02 19:03:26,919 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 14:03:48] 2026-02-02 19:03:37,131 | INFO     | [monitor] cgroup control has ended
[2026-02-02 14:03:48] 2026-02-02 19:03:37,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683165849408)>', '<ExcThread(monitor, started 140682425513728)>']
[2026-02-02 14:03:48] 2026-02-02 19:03:42,880 | INFO     | all workflow threads have been joined
[2026-02-02 14:03:48] 2026-02-02 19:03:42,881 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 14:03:48] 2026-02-02 19:03:42,881 | INFO     | traces error code: 0
[2026-02-02 14:03:48] 2026-02-02 19:03:42,881 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 14:03:48] 2026-02-02 19:03:47,173 | INFO     | PID=2018122 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 14:03:48] 2026-02-02 19:03:47,173 | INFO     | .. there are 29 such processes running
[2026-02-02 14:03:48] 2026-02-02 19:03:47,174 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 14:03:48] 2026-02-02 19:03:47,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 14:03:48] 2026-02-02 19:03:47,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 14:03:48] 2026-02-02 19:03:47,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 14:03:48] 2026-02-02 19:03:47,174 | CRITICAL | thread 'MainThread' is not alive
[2026-02-02 14:03:48] 2026-02-02 19:03:47,174 | INFO     | [monitor] control thread has ended
[2026-02-02 14:03:48] 2026-02-02 19:03:47,557 [wrapper] ==== pilot stdout END ====
[2026-02-02 14:03:48] 2026-02-02 19:03:47,575 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 14:03:48] 2026-02-02 19:03:47,615 [wrapper] pilotpid: 2018122
[2026-02-02 14:03:48] 2026-02-02 19:03:47,643 [wrapper] Pilot exit status: 0
[2026-02-02 14:03:48] 2026-02-02 19:03:47,754 [wrapper] pandaids: 6985634758
[2026-02-02 14:03:48] 2026-02-02 19:03:47,988 [wrapper] cleanup supervisor_pilot 2402896 2018123
[2026-02-02 14:03:48] 2026-02-02 19:03:48,000 [wrapper] Test setup, not cleaning
[2026-02-02 14:03:48] 2026-02-02 19:03:48,027 [wrapper] apfmon messages muted
[2026-02-02 14:03:48] 2026-02-02 19:03:48,054 [wrapper] ==== wrapper stdout END ====
[2026-02-02 14:03:48] 2026-02-02 19:03:48,078 [wrapper] ==== wrapper stderr END ====
[2026-02-02 14:03:48]  *** Error codes and diagnostics ***
[2026-02-02 14:03:48]     "exeErrorCode": 0,
[2026-02-02 14:03:48]     "exeErrorDiag": "",
[2026-02-02 14:03:48]     "pilotErrorCode": 0,
[2026-02-02 14:03:48]     "pilotErrorDiag": "",
[2026-02-02 14:03:48]  *** Listing of results directory ***
[2026-02-02 14:03:48] total 673572
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas    584422 Jan 30 05:51 pilot3.tar.gz
[2026-02-02 14:03:48] -rwx------. 1 boincer umatlas     36322 Jan 30 05:55 runpilot2-wrapper.sh
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas      5111 Jan 30 05:57 queuedata.json
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas       100 Feb  2 12:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 14:03:48] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  2 12:23 run_atlas
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas       105 Feb  2 12:23 job.xml
[2026-02-02 14:03:48] -rw-r--r--. 2 boincer umatlas 499890698 Feb  2 12:23 EVNT.48318008._000087.pool.root.1
[2026-02-02 14:03:48] -rw-r--r--. 2 boincer umatlas     15845 Feb  2 12:23 start_atlas.sh
[2026-02-02 14:03:48] drwxrwx--x. 2 boincer umatlas      4096 Feb  2 12:23 shared
[2026-02-02 14:03:48] -rw-r--r--. 2 boincer umatlas    597758 Feb  2 12:23 input.tar.gz
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas         0 Feb  2 12:23 boinc_lockfile
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas      2523 Feb  2 12:23 pandaJob.out
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas        57 Feb  2 12:23 setup.sh.local
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas   1009772 Feb  2 12:24 agis_schedconf.cvmfs.json
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas   1511668 Feb  2 12:24 agis_ddmendpoints.agis.ALL.json
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas       430 Feb  2 12:25 workernode_map.json
[2026-02-02 14:03:48] drwx------. 5 boincer umatlas      4096 Feb  2 12:25 pilot3
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas 183580571 Feb  2 14:02 HITS.48318010._004644.pool.root.1
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas       530 Feb  2 14:02 boinc_task_state.xml
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas      1045 Feb  2 14:03 memory_monitor_summary.json
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas    347300 Feb  2 14:03 log.48318010._004644.job.log.tgz.1
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas      6337 Feb  2 14:03 heartbeat.json
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas      7171 Feb  2 14:03 init_data.xml
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas       893 Feb  2 14:03 pilotlog.txt
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas        95 Feb  2 14:03 pilot_heartbeat.json
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas        27 Feb  2 14:03 wrapper_checkpoint.txt
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas    813938 Feb  2 14:03 log.48318010._004644.job.log.1
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas       357 Feb  2 14:03 output.list
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas       620 Feb  2 14:03 runtime_log
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas   1177600 Feb  2 14:03 result.tar.gz
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas      9336 Feb  2 14:03 runtime_log.err
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas       651 Feb  2 14:03 eMSKDmgK158n9Rq4apOajLDm4fhM0noT9bVooX4SDmqwKKDmV7XsNo.diag
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas      8192 Feb  2 14:03 boinc_mmap_file
[2026-02-02 14:03:48] -rw-r--r--. 1 boincer umatlas     21474 Feb  2 14:03 stderr.txt
[2026-02-02 14:03:48] HITS file was successfully produced:
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas 183580571 Feb  2 14:02 shared/HITS.pool.root.1
[2026-02-02 14:03:48]  *** Contents of shared directory: ***
[2026-02-02 14:03:48] total 669220
[2026-02-02 14:03:48] -rw-r--r--. 2 boincer umatlas 499890698 Feb  2 12:23 ATLAS.root_0
[2026-02-02 14:03:48] -rw-r--r--. 2 boincer umatlas     15845 Feb  2 12:23 start_atlas.sh
[2026-02-02 14:03:48] -rw-r--r--. 2 boincer umatlas    597758 Feb  2 12:23 input.tar.gz
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas 183580571 Feb  2 14:02 HITS.pool.root.1
[2026-02-02 14:03:48] -rw-------. 1 boincer umatlas   1177600 Feb  2 14:03 result.tar.gz
14:03:50 (2013497): run_atlas exited; CPU time 23747.555235
14:03:50 (2013497): called boinc_finish(0)

</stderr_txt>
]]>

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