Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:07:49 (24456): wrapper (7.7.26015): starting
12:07:49 (24456): wrapper: running run_atlas (--nthreads 12)
[2026-02-02 12:07:49] Arguments: --nthreads 12
[2026-02-02 12:07:49] Threads: 12
[2026-02-02 12:07:49] Checking for CVMFS
[2026-02-02 12:07:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 12:07:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 12:07:49] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 12:07:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 12:07:49] 2.11.2.0 14820 241225 97388 155794 0 50 16502138 20275201 1 130560 0 106327013 99.931 12596121 35808 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-02 12:07:49] CVMFS is ok
[2026-02-02 12:07:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 12:07:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 12:07:49] Further information can be found at the LHC@home message board.
[2026-02-02 12:07:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 12:07:49] Checking for apptainer binary...
[2026-02-02 12:07:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 12:07:49] Running /usr/bin/apptainer --version
[2026-02-02 12:07:49] apptainer version 1.3.2-1.el7
[2026-02-02 12:07:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 12:07:50] c-205-27.aglt2.org
[2026-02-02 12:07:50] apptainer works
[2026-02-02 12:07:50] Set ATHENA_PROC_NUMBER=12
[2026-02-02 12:07:50] Set ATHENA_CORE_NUMBER=12
[2026-02-02 12:07:50] Starting ATLAS job with PandaID=6996650436
[2026-02-02 12:07:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 13:21:23]  *** The last 200 lines of the pilot log: ***
[2026-02-02 13:21:23]  direct_access_wan=False
[2026-02-02 13:21:23]  domain=
[2026-02-02 13:21:23]  filesize=388905
[2026-02-02 13:21:23]  filetype=log
[2026-02-02 13:21:23]  guid=b5cda203-66bb-4181-bba7-b30726f8ce8a
[2026-02-02 13:21:23]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-02 13:21:23]  is_altstaged=None
[2026-02-02 13:21:23]  is_tar=False
[2026-02-02 13:21:23]  lfn=log.48317931._013977.job.log.tgz.1
[2026-02-02 13:21:23]  mtime=0
[2026-02-02 13:21:23]  protocol_id=None
[2026-02-02 13:21:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-02 13:21:23]  replicas=None
[2026-02-02 13:21:23]  scope=mc23_13p6TeV
[2026-02-02 13:21:23]  status=None
[2026-02-02 13:21:23]  status_code=0
[2026-02-02 13:21:23]  storage_token=
[2026-02-02 13:21:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6996650436/log.48317931._013977.job.log.tgz.1
[2026-02-02 13:21:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/b2/log.48317931._013977.job.log.tgz.1
[2026-02-02 13:21:23]  workdir=None
[2026-02-02 13:21:23] ]
[2026-02-02 13:21:23] 2026-02-02 18:20:31,371 | INFO     | transferring file log.48317931._013977.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6996650436/log.48317931._013977.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-02 13:21:23] 2026-02-02 18:20:31,372 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6996650436/log.48317931._013977.job.log.tgz.1 /tmp/boinchome/slots/0/log.48317931._013977.job
[2026-02-02 13:21:23] 2026-02-02 18:20:31,394 | INFO     | adding to output.list: log.48317931._013977.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/b2/log.48317931._013977.job.log.tg
[2026-02-02 13:21:23] 2026-02-02 18:20:31,395 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-02 13:21:23] 2026-02-02 18:20:31,395 | INFO     | summary of transferred files:
[2026-02-02 13:21:23] 2026-02-02 18:20:31,395 | INFO     |  -- lfn=log.48317931._013977.job.log.tgz.1, status_code=0, status=transferred
[2026-02-02 13:21:23] 2026-02-02 18:20:31,395 | INFO     | stage-out finished correctly
[2026-02-02 13:21:23] 2026-02-02 18:20:31,477 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-02 13:21:23] 2026-02-02 18:20:31,930 | INFO     | monitor loop #331: job 0:6996650436 is in state 'finished'
[2026-02-02 13:21:23] 2026-02-02 18:20:31,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-02 13:21:23] 2026-02-02 18:20:32,125 | INFO     | time since job start (4342s) is within the limit (349056.0s)
[2026-02-02 13:21:23] 2026-02-02 18:20:32,847 | INFO     | job 6996650436 has state=finished
[2026-02-02 13:21:23] 2026-02-02 18:20:32,847 | INFO     | preparing for final server update for job 6996650436 in state='finished'
[2026-02-02 13:21:23] 2026-02-02 18:20:32,847 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6996650436/jobReport.json
[2026-02-02 13:21:23] 2026-02-02 18:20:32,850 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-02 13:21:23] 2026-02-02 18:20:32,851 | INFO     | this job has now completed (state=finished)
[2026-02-02 13:21:23] 2026-02-02 18:20:32,851 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 13:21:23] 2026-02-02 18:20:32,851 | INFO     | log transfer has been attempted: DONE
[2026-02-02 13:21:23] 2026-02-02 18:20:32,851 | INFO     | job 6996650436 has finished - writing final server update
[2026-02-02 13:21:23] 2026-02-02 18:20:32,852 | INFO     | total number of processed events: 400 (read)
[2026-02-02 13:21:23] 2026-02-02 18:20:32,854 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6996650436/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 13:21:23] 2026-02-02 18:20:32,855 | INFO     | extracted standard info from prmon json
[2026-02-02 13:21:23] 2026-02-02 18:20:32,855 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 13:21:23] 2026-02-02 18:20:32,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 13:21:23] 2026-02-02 18:20:32,856 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 13:21:23] 2026-02-02 18:20:32,856 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 13:21:23] 2026-02-02 18:20:32,858 | INFO     | fitting pss+swap vs Time
[2026-02-02 13:21:23] 2026-02-02 18:20:32,858 | INFO     | sum of square deviations: 81266640.0
[2026-02-02 13:21:23] 2026-02-02 18:20:32,859 | INFO     | sum of deviations: -6288231238.0
[2026-02-02 13:21:23] 2026-02-02 18:20:32,859 | INFO     | mean x: 1770054340.5
[2026-02-02 13:21:23] 2026-02-02 18:20:32,859 | INFO     | mean y: 2767904.3125
[2026-02-02 13:21:23] 2026-02-02 18:20:32,859 | INFO     | intersect: 136965622488.79623
[2026-02-02 13:21:23] 2026-02-02 18:20:32,859 | INFO     | chi2: 0.08010074742589222
[2026-02-02 13:21:23] 2026-02-02 18:20:32,859 | INFO     | current memory leak: -77.38 B/s (using 64 data points, chi2=0.08)
[2026-02-02 13:21:23] 2026-02-02 18:20:32,860 | INFO     | could have reported an average CPU frequency of 1795 MHz (6 samples)
[2026-02-02 13:21:23] 2026-02-02 18:20:32,860 | INFO     | ..............................
[2026-02-02 13:21:23] 2026-02-02 18:20:32,860 | INFO     | . Timing measurements:
[2026-02-02 13:21:23] 2026-02-02 18:20:32,860 | INFO     | . get job = 0 s
[2026-02-02 13:21:23] 2026-02-02 18:20:32,860 | INFO     | . initial setup = 7 s
[2026-02-02 13:21:23] 2026-02-02 18:20:32,860 | INFO     | . payload setup = 7 s
[2026-02-02 13:21:23] 2026-02-02 18:20:32,860 | INFO     | . stage-in = 0 s
[2026-02-02 13:21:23] 2026-02-02 18:20:32,860 | INFO     | . payload execution = 4317 s
[2026-02-02 13:21:23] 2026-02-02 18:20:32,860 | INFO     | . stage-out = 0 s
[2026-02-02 13:21:23] 2026-02-02 18:20:32,861 | INFO     | . log creation = 0 s
[2026-02-02 13:21:23] 2026-02-02 18:20:32,861 | INFO     | ..............................
[2026-02-02 13:21:23] 2026-02-02 18:20:33,235 | INFO     | 
[2026-02-02 13:21:23] 2026-02-02 18:20:33,235 | INFO     | job summary report
[2026-02-02 13:21:23] 2026-02-02 18:20:33,243 | INFO     | --------------------------------------------------
[2026-02-02 13:21:23] 2026-02-02 18:20:33,243 | INFO     | PanDA job id: 6996650436
[2026-02-02 13:21:23] 2026-02-02 18:20:33,243 | INFO     | task id: 48317931
[2026-02-02 13:21:23] 2026-02-02 18:20:33,243 | INFO     | errors: (none)
[2026-02-02 13:21:23] 2026-02-02 18:20:33,244 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 13:21:23] 2026-02-02 18:20:33,244 | INFO     | pilot state: finished 
[2026-02-02 13:21:23] 2026-02-02 18:20:33,244 | INFO     | transexitcode: 0
[2026-02-02 13:21:23] 2026-02-02 18:20:33,244 | INFO     | exeerrorcode: 0
[2026-02-02 13:21:23] 2026-02-02 18:20:33,244 | INFO     | exeerrordiag: 
[2026-02-02 13:21:23] 2026-02-02 18:20:33,244 | INFO     | exitcode: 0
[2026-02-02 13:21:23] 2026-02-02 18:20:33,245 | INFO     | exitmsg: OK
[2026-02-02 13:21:23] 2026-02-02 18:20:33,245 | INFO     | cpuconsumptiontime: 47194 s
[2026-02-02 13:21:23] 2026-02-02 18:20:33,245 | INFO     | nevents: 400
[2026-02-02 13:21:23] 2026-02-02 18:20:33,245 | INFO     | neventsw: 0
[2026-02-02 13:21:23] 2026-02-02 18:20:33,245 | INFO     | pid: 32557
[2026-02-02 13:21:23] 2026-02-02 18:20:33,245 | INFO     | pgrp: 32557
[2026-02-02 13:21:23] 2026-02-02 18:20:33,245 | INFO     | corecount: 12
[2026-02-02 13:21:23] 2026-02-02 18:20:33,246 | INFO     | event service: False
[2026-02-02 13:21:23] 2026-02-02 18:20:33,246 | INFO     | sizes: {0: 2278214, 11: 2278214, 4328: 2304233, 4330: 2313287, 4331: 2313425}
[2026-02-02 13:21:23] 2026-02-02 18:20:33,246 | INFO     | --------------------------------------------------
[2026-02-02 13:21:23] 2026-02-02 18:20:33,246 | INFO     | 
[2026-02-02 13:21:23] 2026-02-02 18:20:33,246 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-02 13:21:23] 2026-02-02 18:20:33,271 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,272 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,272 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,272 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,272 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,273 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,273 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,274 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,274 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,274 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,274 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,274 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 13:21:23] 2026-02-02 18:20:33,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,275 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 13:21:23] 2026-02-02 18:20:33,275 | INFO     | job 6996650436 has completed (purged errors)
[2026-02-02 13:21:23] 2026-02-02 18:20:33,275 | INFO     | overall cleanup function is called
[2026-02-02 13:21:23] 2026-02-02 18:20:34,283 | INFO     | --- collectZombieJob: --- 10, [32557]
[2026-02-02 13:21:23] 2026-02-02 18:20:34,283 | INFO     | zombie collector waiting for pid 32557
[2026-02-02 13:21:23] 2026-02-02 18:20:34,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 13:21:23] 2026-02-02 18:20:34,284 | INFO     | collected zombie processes
[2026-02-02 13:21:23] 2026-02-02 18:20:34,284 | INFO     | will attempt to kill all subprocesses of pid=32557
[2026-02-02 13:21:23] 2026-02-02 18:20:34,376 | INFO     | process IDs to be killed: [32557] (in reverse order)
[2026-02-02 13:21:23] 2026-02-02 18:20:34,441 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 13:21:23] 2026-02-02 18:20:34,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 13:21:23] 2026-02-02 18:20:34,445 | INFO     | did not find any defunct processes belonging to 32557
[2026-02-02 13:21:23] 2026-02-02 18:20:34,448 | INFO     | did not find any defunct processes belonging to 32557
[2026-02-02 13:21:23] 2026-02-02 18:20:34,448 | INFO     | ready for new job
[2026-02-02 13:21:23] 2026-02-02 18:20:34,448 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 13:21:23] 2026-02-02 18:20:34,450 | INFO     | **************************************
[2026-02-02 13:21:23] 2026-02-02 18:20:34,450 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 13:21:23] 2026-02-02 18:20:34,450 | INFO     | **************************************
[2026-02-02 13:21:23] 2026-02-02 18:20:34,450 | INFO     | 
[2026-02-02 13:21:23] 2026-02-02 18:20:34,450 | INFO     | architecture information:
[2026-02-02 13:21:23] 2026-02-02 18:20:34,451 | INFO     | executing command: cat /etc/os-release
[2026-02-02 13:21:23] 2026-02-02 18:20:34,466 | INFO     | cat /etc/os-release:
[2026-02-02 13:21:23] NAME="CentOS Linux"
[2026-02-02 13:21:23] VERSION="7 (Core)"
[2026-02-02 13:21:23] ID="centos"
[2026-02-02 13:21:23] ID_LIKE="rhel fedora"
[2026-02-02 13:21:23] VERSION_ID="7"
[2026-02-02 13:21:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 13:21:23] ANSI_COLOR="0;31"
[2026-02-02 13:21:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 13:21:23] HOME_URL="https://www.centos.org/"
[2026-02-02 13:21:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 13:21:23] 
[2026-02-02 13:21:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 13:21:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 13:21:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 13:21:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 13:21:23] 
[2026-02-02 13:21:23] 2026-02-02 18:20:34,467 | INFO     | **************************************
[2026-02-02 13:21:23] 2026-02-02 18:20:34,969 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-02 13:21:23] 2026-02-02 18:20:34,986 | INFO     | sufficient remaining disk space (28810674176 B)
[2026-02-02 13:21:23] 2026-02-02 18:20:34,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 13:21:23] 2026-02-02 18:20:34,987 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 13:21:23] 2026-02-02 18:20:34,987 | INFO     | update_server=False
[2026-02-02 13:21:23] 2026-02-02 18:20:34,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 13:21:23] 2026-02-02 18:20:34,988 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 13:21:23] 2026-02-02 18:20:35,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 13:21:23] 2026-02-02 18:20:35,444 | INFO     | aborting loop
[2026-02-02 13:21:23] 2026-02-02 18:20:35,993 | INFO     | [job] retrieve thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:36,018 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:36,031 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:36,042 | INFO     | all data control threads have been joined
[2026-02-02 13:21:23] 2026-02-02 18:20:36,060 | INFO     | all job control threads have been joined
[2026-02-02 13:21:23] 2026-02-02 18:20:36,234 | INFO     | [data] copytool_in thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:36,242 | INFO     | all payload control threads have been joined
[2026-02-02 13:21:23] 2026-02-02 18:20:36,449 | INFO     | [job] job monitor thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:36,538 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:36,825 | INFO     | [job] validate thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:36,954 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:36,971 | INFO     | [payload] validate_post thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:36,993 | INFO     | [data] copytool_out thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:37,046 | INFO     | [data] control thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:37,066 | INFO     | [job] control thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:37,247 | INFO     | [payload] control thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:37,299 | INFO     | [payload] failed_post thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:37,563 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 13:21:23] 2026-02-02 18:20:37,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 13:21:23] 2026-02-02 18:20:38,953 | INFO     | [job] queue monitor thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:20:41,569 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 13:21:23] 2026-02-02 18:21:05,315 | INFO     | PID=28181 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-02 13:21:23] 2026-02-02 18:21:05,316 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 13:21:23] 2026-02-02 18:21:05,316 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 13:21:23] 2026-02-02 18:21:05,316 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 13:21:23] 2026-02-02 18:21:17,016 | INFO     | [monitor] cgroup control has ended
[2026-02-02 13:21:23] 2026-02-02 18:21:18,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140211254576960)>', '<ExcThread(monitor, started 140210071398144)>']
[2026-02-02 13:21:23] 2026-02-02 18:21:18,383 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 13:21:23] 2026-02-02 18:21:18,383 | INFO     | [monitor] control thread has ended
[2026-02-02 13:21:23] 2026-02-02 18:21:23,029 | INFO     | all workflow threads have been joined
[2026-02-02 13:21:23] 2026-02-02 18:21:23,029 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 13:21:23] 2026-02-02 18:21:23,029 | INFO     | traces error code: 0
[2026-02-02 13:21:23] 2026-02-02 18:21:23,030 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 13:21:23] 2026-02-02 18:21:23,113 [wrapper] ==== pilot stdout END ====
[2026-02-02 13:21:23] 2026-02-02 18:21:23,117 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 13:21:23] 2026-02-02 18:21:23,121 [wrapper] pilotpid: 28181
[2026-02-02 13:21:23] 2026-02-02 18:21:23,125 [wrapper] Pilot exit status: 0
[2026-02-02 13:21:23] 2026-02-02 18:21:23,141 [wrapper] pandaids: 6996650436
[2026-02-02 13:21:23] 2026-02-02 18:21:23,184 [wrapper] cleanup supervisor_pilot 18843 28182
[2026-02-02 13:21:23] 2026-02-02 18:21:23,188 [wrapper] Test setup, not cleaning
[2026-02-02 13:21:23] 2026-02-02 18:21:23,192 [wrapper] apfmon messages muted
[2026-02-02 13:21:23] 2026-02-02 18:21:23,196 [wrapper] ==== wrapper stdout END ====
[2026-02-02 13:21:23] 2026-02-02 18:21:23,200 [wrapper] ==== wrapper stderr END ====
[2026-02-02 13:21:23]  *** Error codes and diagnostics ***
[2026-02-02 13:21:23]     "exeErrorCode": 0,
[2026-02-02 13:21:23]     "exeErrorDiag": "",
[2026-02-02 13:21:23]     "pilotErrorCode": 0,
[2026-02-02 13:21:23]     "pilotErrorDiag": "",
[2026-02-02 13:21:23]  *** Listing of results directory ***
[2026-02-02 13:21:23] total 663368
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas    584422 Feb  2 05:55 pilot3.tar.gz
[2026-02-02 13:21:23] -rwx------ 1 boincer umatlas     36322 Feb  2 05:59 runpilot2-wrapper.sh
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas      5111 Feb  2 06:01 queuedata.json
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas       100 Feb  2 12:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 13:21:23] -rwxr-xr-x 1 boincer umatlas      7986 Feb  2 12:07 run_atlas
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas       105 Feb  2 12:07 job.xml
[2026-02-02 13:21:23] -rw-r--r-- 2 boincer umatlas 492244352 Feb  2 12:07 EVNT.48317929._000254.pool.root.1
[2026-02-02 13:21:23] -rw-r--r-- 2 boincer umatlas     15845 Feb  2 12:07 start_atlas.sh
[2026-02-02 13:21:23] drwxrwx--x 2 boincer umatlas      4096 Feb  2 12:07 shared
[2026-02-02 13:21:23] -rw-r--r-- 2 boincer umatlas    597759 Feb  2 12:07 input.tar.gz
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas         0 Feb  2 12:07 boinc_lockfile
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas      2513 Feb  2 12:07 pandaJob.out
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas        57 Feb  2 12:07 setup.sh.local
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas   1009772 Feb  2 12:08 agis_schedconf.cvmfs.json
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas   1511668 Feb  2 12:08 agis_ddmendpoints.agis.ALL.json
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas       445 Feb  2 12:08 workernode_map.json
[2026-02-02 13:21:23] drwx------ 5 boincer umatlas      4096 Feb  2 12:08 pilot3
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas      5953 Feb  2 13:12 init_data.xml
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas 181060893 Feb  2 13:19 HITS.48317931._013977.pool.root.1
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas       530 Feb  2 13:20 boinc_task_state.xml
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas      1045 Feb  2 13:20 memory_monitor_summary.json
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas    388905 Feb  2 13:20 log.48317931._013977.job.log.tgz.1
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas      6422 Feb  2 13:20 heartbeat.json
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas      8192 Feb  2 13:20 boinc_mmap_file
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas        27 Feb  2 13:20 wrapper_checkpoint.txt
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas        95 Feb  2 13:21 pilot_heartbeat.json
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas      4742 Feb  2 13:21 pilotlog.txt
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas    633863 Feb  2 13:21 log.48317931._013977.job.log.1
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas       357 Feb  2 13:21 output.list
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas       620 Feb  2 13:21 runtime_log
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas   1044480 Feb  2 13:21 result.tar.gz
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas      9343 Feb  2 13:21 runtime_log.err
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas       659 Feb  2 13:21 qu2KDmCp668nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUhSKDmZgx1Eo.diag
[2026-02-02 13:21:23] -rw-r--r-- 1 boincer umatlas     21026 Feb  2 13:21 stderr.txt
[2026-02-02 13:21:23] HITS file was successfully produced:
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas 181060893 Feb  2 13:19 shared/HITS.pool.root.1
[2026-02-02 13:21:23]  *** Contents of shared directory: ***
[2026-02-02 13:21:23] total 659148
[2026-02-02 13:21:23] -rw-r--r-- 2 boincer umatlas 492244352 Feb  2 12:07 ATLAS.root_0
[2026-02-02 13:21:23] -rw-r--r-- 2 boincer umatlas     15845 Feb  2 12:07 start_atlas.sh
[2026-02-02 13:21:23] -rw-r--r-- 2 boincer umatlas    597759 Feb  2 12:07 input.tar.gz
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas 181060893 Feb  2 13:19 HITS.pool.root.1
[2026-02-02 13:21:23] -rw------- 1 boincer umatlas   1044480 Feb  2 13:21 result.tar.gz
13:21:24 (24456): run_atlas exited; CPU time 47178.706379
13:21:24 (24456): called boinc_finish(0)

</stderr_txt>
]]>

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