Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:07:27 (3253287): wrapper (7.7.26015): starting
01:07:27 (3253287): wrapper: running run_atlas (--nthreads 4)
[2026-02-03 01:07:27] Arguments: --nthreads 4
[2026-02-03 01:07:27] Threads: 4
[2026-02-03 01:07:27] Checking for CVMFS
[2026-02-03 01:07:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 01:07:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 01:07:28] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 01:07:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 01:07:28] 2.9.2.0 1839157 7887 98712 155810 1 50 23883400 36864000 0 130560 0 3947868 99.987 261077 15095 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-03 01:07:28] CVMFS is ok
[2026-02-03 01:07:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 01:07:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 01:07:28] Further information can be found at the LHC@home message board.
[2026-02-03 01:07:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 01:07:28] Checking for apptainer binary...
[2026-02-03 01:07:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 01:07:28] Running /usr/bin/apptainer --version
[2026-02-03 01:07:28] apptainer version 1.4.1-1.1
[2026-02-03 01:07:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 01:07:28] thA332a
[2026-02-03 01:07:28] apptainer works
[2026-02-03 01:07:28] Set ATHENA_PROC_NUMBER=4
[2026-02-03 01:07:28] Set ATHENA_CORE_NUMBER=4
[2026-02-03 01:07:28] Starting ATLAS job with PandaID=6996582836
[2026-02-03 01:07:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 02:25:06]  *** The last 200 lines of the pilot log: ***
[2026-02-03 02:25:06] 2026-02-03 01:24:34,830 | INFO     | overall cleanup function is called
[2026-02-03 02:25:06] 2026-02-03 01:24:35,837 | INFO     | --- collectZombieJob: --- 10, [3261914]
[2026-02-03 02:25:06] 2026-02-03 01:24:35,837 | INFO     | zombie collector waiting for pid 3261914
[2026-02-03 02:25:06] 2026-02-03 01:24:35,837 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 02:25:06] 2026-02-03 01:24:35,837 | INFO     | collected zombie processes
[2026-02-03 02:25:06] 2026-02-03 01:24:35,837 | INFO     | will attempt to kill all subprocesses of pid=3261914
[2026-02-03 02:25:06] 2026-02-03 01:24:35,882 | INFO     | process IDs to be killed: [3261914] (in reverse order)
[2026-02-03 02:25:06] 2026-02-03 01:24:35,916 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 02:25:06] 2026-02-03 01:24:35,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 02:25:06] 2026-02-03 01:24:35,918 | INFO     | did not find any defunct processes belonging to 3261914
[2026-02-03 02:25:06] 2026-02-03 01:24:35,919 | INFO     | did not find any defunct processes belonging to 3261914
[2026-02-03 02:25:06] 2026-02-03 01:24:35,920 | INFO     | ready for new job
[2026-02-03 02:25:06] 2026-02-03 01:24:35,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 02:25:06] 2026-02-03 01:24:35,920 | INFO     | **************************************
[2026-02-03 02:25:06] 2026-02-03 01:24:35,920 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 02:25:06] 2026-02-03 01:24:35,920 | INFO     | **************************************
[2026-02-03 02:25:06] 2026-02-03 01:24:35,920 | INFO     | 
[2026-02-03 02:25:06] 2026-02-03 01:24:35,921 | INFO     | architecture information:
[2026-02-03 02:25:06] 2026-02-03 01:24:35,921 | INFO     | executing command: cat /etc/os-release
[2026-02-03 02:25:06] 2026-02-03 01:24:35,935 | INFO     | cat /etc/os-release:
[2026-02-03 02:25:06] NAME="CentOS Linux"
[2026-02-03 02:25:06] VERSION="7 (Core)"
[2026-02-03 02:25:06] ID="centos"
[2026-02-03 02:25:06] ID_LIKE="rhel fedora"
[2026-02-03 02:25:06] VERSION_ID="7"
[2026-02-03 02:25:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 02:25:06] ANSI_COLOR="0;31"
[2026-02-03 02:25:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 02:25:06] HOME_URL="https://www.centos.org/"
[2026-02-03 02:25:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 02:25:06] 
[2026-02-03 02:25:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 02:25:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 02:25:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 02:25:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 02:25:06] 
[2026-02-03 02:25:06] 2026-02-03 01:24:35,935 | INFO     | **************************************
[2026-02-03 02:25:06] 2026-02-03 01:24:36,437 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-03 02:25:06] 2026-02-03 01:24:36,456 | INFO     | sufficient remaining disk space (332653395968 B)
[2026-02-03 02:25:06] 2026-02-03 01:24:36,456 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 02:25:06] 2026-02-03 01:24:36,456 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 02:25:06] 2026-02-03 01:24:36,456 | INFO     | update_server=False
[2026-02-03 02:25:06] 2026-02-03 01:24:36,456 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 02:25:06] 2026-02-03 01:24:36,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 02:25:06] 2026-02-03 01:24:36,456 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 02:25:06] 2026-02-03 01:24:36,457 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 02:25:06] 2026-02-03 01:24:36,457 | INFO     | aborting loop
[2026-02-03 02:25:06] 2026-02-03 01:24:36,541 | INFO     | all data control threads have been joined
[2026-02-03 02:25:06] 2026-02-03 01:24:36,607 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 02:25:06] 2026-02-03 01:24:37,462 | INFO     | [job] retrieve thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:37,462 | INFO     | [job] queue monitor thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:37,462 | INFO     | [job] job monitor thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:37,544 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:37,547 | INFO     | [data] control thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:37,597 | INFO     | all payload control threads have been joined
[2026-02-03 02:25:06] 2026-02-03 01:24:37,650 | INFO     | [data] copytool_in thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:37,677 | INFO     | [payload] failed_post thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:37,765 | INFO     | all job control threads have been joined
[2026-02-03 02:25:06] 2026-02-03 01:24:38,603 | INFO     | [payload] control thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:38,613 | INFO     | [data] copytool_out thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:38,695 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:38,771 | INFO     | [job] control thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:38,878 | INFO     | [job] validate thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:38,952 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:39,027 | INFO     | [payload] validate_post thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:40,464 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:46,317 | INFO     | [monitor] cgroup control has ended
[2026-02-03 02:25:06] 2026-02-03 01:24:46,629 | INFO     | job.realtimelogging is not enabled
[2026-02-03 02:25:06] 2026-02-03 01:24:47,635 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 02:25:06] 2026-02-03 01:24:48,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286536832832)>', '<ExcThread(monitor, started 140285300434688)>']
[2026-02-03 02:25:06] 2026-02-03 01:24:53,471 | INFO     | all workflow threads have been joined
[2026-02-03 02:25:06] 2026-02-03 01:24:53,472 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 02:25:06] 2026-02-03 01:24:53,472 | INFO     | traces error code: 0
[2026-02-03 02:25:06] 2026-02-03 01:24:53,472 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 02:25:06] 2026-02-03 01:25:06,128 | INFO     | PID=3257389 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 02:25:06] 2026-02-03 01:25:06,128 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 02:25:06] 2026-02-03 01:25:06,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 02:25:06] 2026-02-03 01:25:06,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 02:25:06] 2026-02-03 01:25:06,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 02:25:06] 2026-02-03 01:25:06,128 | INFO     | [monitor] control thread has ended
[2026-02-03 02:25:06] 2026-02-03 01:25:06,207 [wrapper] ==== pilot stdout END ====
[2026-02-03 02:25:06] 2026-02-03 01:25:06,211 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 02:25:06] 2026-02-03 01:25:06,214 [wrapper] pilotpid: 3257389
[2026-02-03 02:25:06] 2026-02-03 01:25:06,218 [wrapper] Pilot exit status: 0
[2026-02-03 02:25:06] 2026-02-03 01:25:06,230 [wrapper] pandaids: 6996582836
[2026-02-03 02:25:06] 2026-02-03 01:25:06,252 [wrapper] cleanup supervisor_pilot 3267330 3257390
[2026-02-03 02:25:06] 2026-02-03 01:25:06,256 [wrapper] Test setup, not cleaning
[2026-02-03 02:25:06] 2026-02-03 01:25:06,260 [wrapper] apfmon messages muted
[2026-02-03 02:25:06] 2026-02-03 01:25:06,264 [wrapper] ==== wrapper stdout END ====
[2026-02-03 02:25:06] 2026-02-03 01:25:06,268 [wrapper] ==== wrapper stderr END ====
[2026-02-03 02:25:06]  *** Error codes and diagnostics ***
[2026-02-03 02:25:06]     "exeErrorCode": 0,
[2026-02-03 02:25:06]     "exeErrorDiag": "",
[2026-02-03 02:25:06]     "pilotErrorCode": 0,
[2026-02-03 02:25:06]     "pilotErrorDiag": "",
[2026-02-03 02:25:06]  *** Listing of results directory ***
[2026-02-03 02:25:06] total 670444
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc    584422 Feb  2 06:08 pilot3.tar.gz
[2026-02-03 02:25:06] -rwx------ 1 boinc boinc     36322 Feb  2 06:12 runpilot2-wrapper.sh
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc      5111 Feb  2 06:15 queuedata.json
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc       100 Feb  3 01:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 02:25:06] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 01:07 run_atlas
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc       105 Feb  3 01:07 job.xml
[2026-02-03 02:25:06] -rw-r--r-- 2 boinc boinc 499316954 Feb  3 01:07 EVNT.48317949._000139.pool.root.1
[2026-02-03 02:25:06] -rw-r--r-- 2 boinc boinc    597757 Feb  3 01:07 input.tar.gz
[2026-02-03 02:25:06] -rw-r--r-- 2 boinc boinc     15845 Feb  3 01:07 start_atlas.sh
[2026-02-03 02:25:06] drwxrwx--x 2 boinc boinc      4096 Feb  3 01:07 shared
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc         0 Feb  3 01:07 boinc_setup_complete
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc      6370 Feb  3 01:07 init_data.xml
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc         0 Feb  3 01:07 boinc_lockfile
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc      2521 Feb  3 01:07 pandaJob.out
[2026-02-03 02:25:06] -rw------- 1 boinc boinc   1009316 Feb  3 01:07 agis_schedconf.cvmfs.json
[2026-02-03 02:25:06] -rw------- 1 boinc boinc   1511668 Feb  3 01:07 agis_ddmendpoints.agis.ALL.json
[2026-02-03 02:25:06] -rw------- 1 boinc boinc       422 Feb  3 01:07 workernode_map.json
[2026-02-03 02:25:06] drwx------ 5 boinc boinc      4096 Feb  3 01:07 pilot3
[2026-02-03 02:25:06] -rw------- 1 boinc boinc 181418145 Feb  3 02:24 HITS.48317952._007450.pool.root.1
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc       530 Feb  3 02:24 boinc_task_state.xml
[2026-02-03 02:25:06] -rw------- 1 boinc boinc      1021 Feb  3 02:24 memory_monitor_summary.json
[2026-02-03 02:25:06] -rw------- 1 boinc boinc    259380 Feb  3 02:24 log.48317952._007450.job.log.tgz.1
[2026-02-03 02:25:06] -rw------- 1 boinc boinc      6306 Feb  3 02:24 heartbeat.json
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc      8192 Feb  3 02:25 boinc_mmap_file
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc        27 Feb  3 02:25 wrapper_checkpoint.txt
[2026-02-03 02:25:06] -rw------- 1 boinc boinc       747 Feb  3 02:25 pilotlog.txt
[2026-02-03 02:25:06] -rw------- 1 boinc boinc        95 Feb  3 02:25 pilot_heartbeat.json
[2026-02-03 02:25:06] -rw------- 1 boinc boinc    679782 Feb  3 02:25 log.48317952._007450.job.log.1
[2026-02-03 02:25:06] -rw------- 1 boinc boinc       357 Feb  3 02:25 output.list
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc       620 Feb  3 02:25 runtime_log
[2026-02-03 02:25:06] -rw------- 1 boinc boinc    952320 Feb  3 02:25 result.tar.gz
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc      8901 Feb  3 02:25 runtime_log.err
[2026-02-03 02:25:06] -rw------- 1 boinc boinc       658 Feb  3 02:25 jcpKDmfP168n9Rq4apOajLDm4fhM0noT9bVooX4SDmLqRKDmkG9aEo.diag
[2026-02-03 02:25:06] -rw-r--r-- 1 boinc boinc     10800 Feb  3 02:25 stderr.txt
[2026-02-03 02:25:06] HITS file was successfully produced:
[2026-02-03 02:25:06] -rw------- 1 boinc boinc 181418145 Feb  3 02:24 shared/HITS.pool.root.1
[2026-02-03 02:25:06]  *** Contents of shared directory: ***
[2026-02-03 02:25:06] total 666324
[2026-02-03 02:25:06] -rw-r--r-- 2 boinc boinc 499316954 Feb  3 01:07 ATLAS.root_0
[2026-02-03 02:25:06] -rw-r--r-- 2 boinc boinc    597757 Feb  3 01:07 input.tar.gz
[2026-02-03 02:25:06] -rw-r--r-- 2 boinc boinc     15845 Feb  3 01:07 start_atlas.sh
[2026-02-03 02:25:06] -rw------- 1 boinc boinc 181418145 Feb  3 02:24 HITS.pool.root.1
[2026-02-03 02:25:06] -rw------- 1 boinc boinc    952320 Feb  3 02:25 result.tar.gz
02:25:07 (3253287): run_atlas exited; CPU time 17401.512863
02:25:07 (3253287): called boinc_finish(0)

</stderr_txt>
]]>

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