Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:25:51 (365): wrapper (7.7.26015): starting
22:25:51 (365): wrapper: running run_atlas (--nthreads 8)
[2026-02-02 22:25:51] Arguments: --nthreads 8
[2026-02-02 22:25:51] Threads: 8
[2026-02-02 22:25:51] Checking for CVMFS
[2026-02-02 22:25:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 22:25:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 22:25:53] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 22:25:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 22:25:54] 2.11.2.0 4684 70513 133504 155806 1 53 19842371 25165825 899 130560 0 24568269 99.821 16650299 3109 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-02 22:25:54] CVMFS is ok
[2026-02-02 22:25:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 22:25:54] Checking for apptainer binary...
[2026-02-02 22:25:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 22:25:54] Running /usr/bin/apptainer --version
[2026-02-02 22:25:54] apptainer version 1.3.2-1.el7
[2026-02-02 22:25:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 22:26:15] cg-vwn471.simple-grid.lan
[2026-02-02 22:26:15] apptainer works
[2026-02-02 22:26:15] Set ATHENA_PROC_NUMBER=8
[2026-02-02 22:26:15] Set ATHENA_CORE_NUMBER=8
[2026-02-02 22:26:15] Starting ATLAS job with PandaID=6983304938
[2026-02-02 22:26:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 03:00:37]  *** The last 200 lines of the pilot log: ***
[2026-02-03 03:00:37] 2026-02-03 01:59:47,790 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 03:00:37] 2026-02-03 01:59:47,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 03:00:37] 2026-02-03 01:59:47,790 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 03:00:37] 2026-02-03 01:59:47,790 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 03:00:37] 2026-02-03 01:59:47,796 | INFO     | fitting pss+swap vs Time
[2026-02-03 03:00:37] 2026-02-03 01:59:47,796 | INFO     | sum of square deviations: 5325139844.5
[2026-02-03 03:00:37] 2026-02-03 01:59:47,798 | INFO     | sum of deviations: 127574967723.49995
[2026-02-03 03:00:37] 2026-02-03 01:59:47,799 | INFO     | mean x: 1770076114.5
[2026-02-03 03:00:37] 2026-02-03 01:59:47,799 | INFO     | mean y: 2432855.7248062016
[2026-02-03 03:00:37] 2026-02-03 01:59:47,799 | INFO     | intersect: -42403477555.94414
[2026-02-03 03:00:37] 2026-02-03 01:59:47,799 | INFO     | chi2: 8.772299624916439
[2026-02-03 03:00:37] 2026-02-03 01:59:47,800 | INFO     | sum of square deviations: 5021496942.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,802 | INFO     | sum of deviations: 141818237967.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,802 | INFO     | mean x: 1770075962.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,802 | INFO     | mean y: 2439874.418972332
[2026-02-03 03:00:37] 2026-02-03 01:59:47,802 | INFO     | intersect: -49988440713.193344
[2026-02-03 03:00:37] 2026-02-03 01:59:47,802 | INFO     | chi2: 8.076275965367442
[2026-02-03 03:00:37] 2026-02-03 01:59:47,803 | INFO     | current chi2=8.076275965367442 (change=7.9343352291803075 %)
[2026-02-03 03:00:37] 2026-02-03 01:59:47,803 | INFO     | right removable region: 252
[2026-02-03 03:00:37] 2026-02-03 01:59:47,803 | INFO     | sum of square deviations: 5021496942.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,807 | INFO     | sum of deviations: 37467669612.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,808 | INFO     | mean x: 1770076267.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,808 | INFO     | mean y: 2478085.1501976284
[2026-02-03 03:00:37] 2026-02-03 01:59:47,808 | INFO     | intersect: -13204864969.326225
[2026-02-03 03:00:37] 2026-02-03 01:59:47,808 | INFO     | chi2: 3.6942776454648887
[2026-02-03 03:00:37] 2026-02-03 01:59:47,808 | INFO     | current chi2=3.6942776454648887 (change=57.88701020913797 %)
[2026-02-03 03:00:37] 2026-02-03 01:59:47,809 | INFO     | sum of square deviations: 4729621702.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,811 | INFO     | sum of deviations: -30119274722.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,811 | INFO     | mean x: 1770076419.5
[2026-02-03 03:00:37] 2026-02-03 01:59:47,811 | INFO     | mean y: 2513347.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,811 | INFO     | intersect: 11274750603.377216
[2026-02-03 03:00:37] 2026-02-03 01:59:47,812 | INFO     | chi2: 1.0162535534570014
[2026-02-03 03:00:37] 2026-02-03 01:59:47,812 | INFO     | current chi2=1.0162535534570014 (change=72.49114303294019 %)
[2026-02-03 03:00:37] 2026-02-03 01:59:47,812 | INFO     | sum of square deviations: 4449281562.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,814 | INFO     | sum of deviations: -39428956374.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,814 | INFO     | mean x: 1770076572.0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,814 | INFO     | mean y: 2518373.703703704
[2026-02-03 03:00:37] 2026-02-03 01:59:47,814 | INFO     | intersect: 15688707472.659061
[2026-02-03 03:00:37] 2026-02-03 01:59:47,815 | INFO     | chi2: 0.9284070508504783
[2026-02-03 03:00:37] 2026-02-03 01:59:47,815 | INFO     | current chi2=0.9284070508504783 (change=8.644152072845866 %)
[2026-02-03 03:00:37] 2026-02-03 01:59:47,815 | INFO     | left removable region: 30
[2026-02-03 03:00:37] 2026-02-03 01:59:47,815 | INFO     | sum of square deviations: 3392567795.5
[2026-02-03 03:00:37] 2026-02-03 01:59:47,817 | INFO     | sum of deviations: 46975002.00000041
[2026-02-03 03:00:37] 2026-02-03 01:59:47,817 | INFO     | mean x: 1770076846.5
[2026-02-03 03:00:37] 2026-02-03 01:59:47,818 | INFO     | mean y: 2513396.3603603602
[2026-02-03 03:00:37] 2026-02-03 01:59:47,818 | INFO     | intersect: -21995874.61567839
[2026-02-03 03:00:37] 2026-02-03 01:59:47,818 | INFO     | chi2: 0.046720978537625434
[2026-02-03 03:00:37] 2026-02-03 01:59:47,818 | INFO     | current memory leak: 0.01 B/s (using 222 data points, chi2=0.05)
[2026-02-03 03:00:37] 2026-02-03 01:59:47,819 | INFO     | could have reported an average CPU frequency of 2249 MHz (12 samples)
[2026-02-03 03:00:37] 2026-02-03 01:59:47,819 | INFO     | ..............................
[2026-02-03 03:00:37] 2026-02-03 01:59:47,819 | INFO     | . Timing measurements:
[2026-02-03 03:00:37] 2026-02-03 01:59:47,819 | INFO     | . get job = 0 s
[2026-02-03 03:00:37] 2026-02-03 01:59:47,819 | INFO     | . initial setup = 124 s
[2026-02-03 03:00:37] 2026-02-03 01:59:47,820 | INFO     | . payload setup = 157 s
[2026-02-03 03:00:37] 2026-02-03 01:59:47,820 | INFO     | . stage-in = 0 s
[2026-02-03 03:00:37] 2026-02-03 01:59:47,820 | INFO     | . payload execution = 15821 s
[2026-02-03 03:00:37] 2026-02-03 01:59:47,820 | INFO     | . stage-out = 6 s
[2026-02-03 03:00:37] 2026-02-03 01:59:47,820 | INFO     | . log creation = 1 s
[2026-02-03 03:00:37] 2026-02-03 01:59:47,820 | INFO     | ..............................
[2026-02-03 03:00:37] 2026-02-03 01:59:47,943 | INFO     | 
[2026-02-03 03:00:37] 2026-02-03 01:59:47,943 | INFO     | job summary report
[2026-02-03 03:00:37] 2026-02-03 01:59:47,943 | INFO     | --------------------------------------------------
[2026-02-03 03:00:37] 2026-02-03 01:59:47,943 | INFO     | PanDA job id: 6983304938
[2026-02-03 03:00:37] 2026-02-03 01:59:47,943 | INFO     | task id: 48318042
[2026-02-03 03:00:37] 2026-02-03 01:59:47,943 | INFO     | errors: (none)
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | pilot state: finished 
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | transexitcode: 0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | exeerrorcode: 0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | exeerrordiag: 
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | exitcode: 0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | exitmsg: OK
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | cpuconsumptiontime: 59422 s
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | nevents: 400
[2026-02-03 03:00:37] 2026-02-03 01:59:47,944 | INFO     | neventsw: 0
[2026-02-03 03:00:37] 2026-02-03 01:59:47,945 | INFO     | pid: 8862
[2026-02-03 03:00:37] 2026-02-03 01:59:47,945 | INFO     | pgrp: 8862
[2026-02-03 03:00:37] 2026-02-03 01:59:47,945 | INFO     | corecount: 8
[2026-02-03 03:00:37] 2026-02-03 01:59:47,945 | INFO     | event service: False
[2026-02-03 03:00:37] 2026-02-03 01:59:47,945 | INFO     | sizes: {0: 2277790, 1: 2278247, 2: 2278307, 12: 2278335, 15983: 2309587, 15991: 2318587, 15993: 2318771, 15997: 2318965}
[2026-02-03 03:00:37] 2026-02-03 01:59:47,945 | INFO     | --------------------------------------------------
[2026-02-03 03:00:37] 2026-02-03 01:59:47,945 | INFO     | 
[2026-02-03 03:00:37] 2026-02-03 01:59:47,945 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2026-02-03 03:00:37] 2026-02-03 01:59:48,020 | INFO     | time since job start (16009s) is within the limit (349056.0s)
[2026-02-03 03:00:37] 2026-02-03 01:59:48,517 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,518 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,518 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,518 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,518 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,518 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,518 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,518 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,520 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 03:00:37] 2026-02-03 01:59:48,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,520 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 03:00:37] 2026-02-03 01:59:48,520 | INFO     | job 6983304938 has completed (purged errors)
[2026-02-03 03:00:37] 2026-02-03 01:59:48,520 | INFO     | overall cleanup function is called
[2026-02-03 03:00:37] 2026-02-03 01:59:49,119 | INFO     | PID=4384 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-03 03:00:37] 2026-02-03 01:59:49,119 | INFO     | .. there are 2 such processes running
[2026-02-03 03:00:37] 2026-02-03 01:59:49,529 | INFO     | --- collectZombieJob: --- 10, [8862]
[2026-02-03 03:00:37] 2026-02-03 01:59:49,529 | INFO     | zombie collector waiting for pid 8862
[2026-02-03 03:00:37] 2026-02-03 01:59:49,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 03:00:37] 2026-02-03 01:59:49,529 | INFO     | collected zombie processes
[2026-02-03 03:00:37] 2026-02-03 01:59:49,529 | INFO     | will attempt to kill all subprocesses of pid=8862
[2026-02-03 03:00:37] 2026-02-03 01:59:49,626 | INFO     | process IDs to be killed: [8862] (in reverse order)
[2026-02-03 03:00:37] 2026-02-03 01:59:50,476 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 03:00:37] 2026-02-03 01:59:50,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 03:00:37] 2026-02-03 01:59:50,479 | INFO     | did not find any defunct processes belonging to 8862
[2026-02-03 03:00:37] 2026-02-03 01:59:50,481 | INFO     | did not find any defunct processes belonging to 8862
[2026-02-03 03:00:37] 2026-02-03 01:59:50,481 | INFO     | ready for new job
[2026-02-03 03:00:37] 2026-02-03 01:59:50,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 03:00:37] 2026-02-03 01:59:50,483 | INFO     | **************************************
[2026-02-03 03:00:37] 2026-02-03 01:59:50,483 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 03:00:37] 2026-02-03 01:59:50,483 | INFO     | **************************************
[2026-02-03 03:00:37] 2026-02-03 01:59:50,484 | INFO     | 
[2026-02-03 03:00:37] 2026-02-03 01:59:50,484 | INFO     | pilot is running in a VM
[2026-02-03 03:00:37] 2026-02-03 01:59:50,484 | INFO     | architecture information:
[2026-02-03 03:00:37] 2026-02-03 01:59:50,485 | INFO     | executing command: cat /etc/os-release
[2026-02-03 03:00:37] 2026-02-03 01:59:50,803 | INFO     | cat /etc/os-release:
[2026-02-03 03:00:37] NAME="CentOS Linux"
[2026-02-03 03:00:37] VERSION="7 (Core)"
[2026-02-03 03:00:37] ID="centos"
[2026-02-03 03:00:37] ID_LIKE="rhel fedora"
[2026-02-03 03:00:37] VERSION_ID="7"
[2026-02-03 03:00:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 03:00:37] ANSI_COLOR="0;31"
[2026-02-03 03:00:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 03:00:37] HOME_URL="https://www.centos.org/"
[2026-02-03 03:00:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 03:00:37] 
[2026-02-03 03:00:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 03:00:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 03:00:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 03:00:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 03:00:37] 
[2026-02-03 03:00:37] 2026-02-03 01:59:50,803 | INFO     | **************************************
[2026-02-03 03:00:37] 2026-02-03 01:59:51,307 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2026-02-03 03:00:37] 2026-02-03 01:59:51,567 | INFO     | sufficient remaining disk space (495107178496 B)
[2026-02-03 03:00:37] 2026-02-03 01:59:51,568 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 03:00:37] 2026-02-03 01:59:51,568 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 03:00:37] 2026-02-03 01:59:51,568 | INFO     | update_server=False
[2026-02-03 03:00:37] 2026-02-03 01:59:51,568 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 03:00:37] 2026-02-03 01:59:51,571 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 03:00:37] 2026-02-03 01:59:52,000 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-03 03:00:37] 2026-02-03 01:59:52,000 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-03 03:00:37] 2026-02-03 01:59:52,000 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 03:00:37] 2026-02-03 01:59:52,000 | INFO     | will abort loop
[2026-02-03 03:00:37] 2026-02-03 01:59:52,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 03:00:37] 2026-02-03 01:59:52,574 | INFO     | [job] retrieve thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:52,603 | INFO     | all job control threads have been joined
[2026-02-03 03:00:37] 2026-02-03 01:59:52,653 | INFO     | all data control threads have been joined
[2026-02-03 03:00:37] 2026-02-03 01:59:52,729 | INFO     | all payload control threads have been joined
[2026-02-03 03:00:37] 2026-02-03 01:59:52,774 | INFO     | [job] validate thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:52,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 03:00:37] 2026-02-03 01:59:53,006 | INFO     | [job] job monitor thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,016 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,100 | INFO     | [payload] failed_post thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,341 | INFO     | [payload] validate_post thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,353 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,411 | INFO     | [data] copytool_in thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,609 | INFO     | [job] control thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,659 | INFO     | [data] control thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,735 | INFO     | [payload] control thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,882 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:53,965 | INFO     | [job] queue monitor thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:54,017 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:54,564 | INFO     | [data] copytool_out thread has finished
[2026-02-03 03:00:37] 2026-02-03 01:59:55,580 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 03:00:37] 2026-02-03 02:00:21,251 | INFO     | PID=4384 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-03 03:00:37] 2026-02-03 02:00:21,251 | INFO     | .. there are 2 such processes running
[2026-02-03 03:00:37] 2026-02-03 02:00:21,251 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 03:00:37] 2026-02-03 02:00:21,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 03:00:37] 2026-02-03 02:00:21,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 03:00:37] 2026-02-03 02:00:25,684 | INFO     | [monitor] cgroup control has ended
[2026-02-03 03:00:37] 2026-02-03 02:00:26,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139782752614208)>', '<ExcThread(monitor, started 139781723911936)>']
[2026-02-03 03:00:37] 2026-02-03 02:00:27,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 03:00:37] 2026-02-03 02:00:27,287 | INFO     | [monitor] control thread has ended
[2026-02-03 03:00:37] 2026-02-03 02:00:32,021 | INFO     | all workflow threads have been joined
[2026-02-03 03:00:37] 2026-02-03 02:00:32,021 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 03:00:37] 2026-02-03 02:00:32,021 | INFO     | traces error code: 0
[2026-02-03 03:00:37] 2026-02-03 02:00:32,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 03:00:37] 2026-02-03 02:00:32,389 [wrapper] ==== pilot stdout END ====
[2026-02-03 03:00:37] 2026-02-03 02:00:32,526 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 03:00:37] 2026-02-03 02:00:32,617 [wrapper] pilotpid: 4384
[2026-02-03 03:00:37] 2026-02-03 02:00:32,718 [wrapper] Pilot exit status: 0
[2026-02-03 03:00:37] 2026-02-03 02:00:33,291 [wrapper] pandaids: 6983304938
[2026-02-03 03:00:37] 2026-02-03 02:00:34,229 [wrapper] cleanup supervisor_pilot 15131 4385
[2026-02-03 03:00:37] 2026-02-03 02:00:34,392 [wrapper] Test setup, not cleaning
[2026-02-03 03:00:37] 2026-02-03 02:00:34,477 [wrapper] apfmon messages muted
[2026-02-03 03:00:37] 2026-02-03 02:00:34,594 [wrapper] ==== wrapper stdout END ====
[2026-02-03 03:00:37] 2026-02-03 02:00:34,659 [wrapper] ==== wrapper stderr END ====
[2026-02-03 03:00:37]  *** Error codes and diagnostics ***
[2026-02-03 03:00:37]     "exeErrorCode": 0,
[2026-02-03 03:00:37]     "exeErrorDiag": "",
[2026-02-03 03:00:37]     "pilotErrorCode": 0,
[2026-02-03 03:00:37]     "pilotErrorDiag": "",
[2026-02-03 03:00:37]  *** Listing of results directory ***
[2026-02-03 03:00:37] total 675812
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc    584422 Jan 25 17:28 pilot3.tar.gz
[2026-02-03 03:00:37] -rwx------. 1 boinc boinc     36322 Jan 25 17:32 runpilot2-wrapper.sh
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc      5111 Jan 25 17:35 queuedata.json
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc       100 Feb  2 22:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 03:00:37] -rwxr-xr-x. 1 boinc boinc      7986 Feb  2 22:25 run_atlas
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc       105 Feb  2 22:25 job.xml
[2026-02-03 03:00:37] -rw-r--r--. 2 boinc boinc 496698676 Feb  2 22:25 EVNT.48318040._000018.pool.root.1
[2026-02-03 03:00:37] -rw-r--r--. 2 boinc boinc     15845 Feb  2 22:25 start_atlas.sh
[2026-02-03 03:00:37] drwxrwx--x. 2 boinc boinc        68 Feb  2 22:25 shared
[2026-02-03 03:00:37] -rw-r--r--. 2 boinc boinc    597766 Feb  2 22:25 input.tar.gz
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc         0 Feb  2 22:25 boinc_lockfile
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc      6392 Feb  2 22:25 init_data.xml
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc      2531 Feb  2 22:26 pandaJob.out
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc       415 Feb  2 22:32 workernode_map.json
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc   1009308 Feb  2 22:32 agis_schedconf.cvmfs.json
[2026-02-03 03:00:37] drwx------. 5 boinc boinc      4096 Feb  2 22:32 pilot3
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc 185887670 Feb  3 02:58 HITS.48318042._000897.pool.root.1
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc       532 Feb  3 02:58 boinc_task_state.xml
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc        95 Feb  3 02:59 pilot_heartbeat.json
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc      1011 Feb  3 02:59 memory_monitor_summary.json
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc   1511668 Feb  3 02:59 agis_ddmendpoints.agis.ALL.json
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc    515938 Feb  3 02:59 log.48318042._000897.job.log.tgz.1
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc      6316 Feb  3 02:59 heartbeat.json
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc      8192 Feb  3 03:00 boinc_mmap_file
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc        28 Feb  3 03:00 wrapper_checkpoint.txt
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc      5066 Feb  3 03:00 pilotlog.txt
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc   2245161 Feb  3 03:00 log.48318042._000897.job.log.1
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc       357 Feb  3 03:00 output.list
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc       620 Feb  3 03:00 runtime_log
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc   2775040 Feb  3 03:00 result.tar.gz
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc      8832 Feb  3 03:00 runtime_log.err
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc       655 Feb  3 03:00 hsuLDm5CI48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmV17KDmv4dFLo.diag
[2026-02-03 03:00:37] -rw-r--r--. 1 boinc boinc     20773 Feb  3 03:00 stderr.txt
[2026-02-03 03:00:37] HITS file was successfully produced:
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc 185887670 Feb  3 02:58 shared/HITS.pool.root.1
[2026-02-03 03:00:37]  *** Contents of shared directory: ***
[2026-02-03 03:00:37] total 669904
[2026-02-03 03:00:37] -rw-r--r--. 2 boinc boinc 496698676 Feb  2 22:25 ATLAS.root_0
[2026-02-03 03:00:37] -rw-r--r--. 2 boinc boinc     15845 Feb  2 22:25 start_atlas.sh
[2026-02-03 03:00:37] -rw-r--r--. 2 boinc boinc    597766 Feb  2 22:25 input.tar.gz
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc 185887670 Feb  3 02:58 HITS.pool.root.1
[2026-02-03 03:00:37] -rw-------. 1 boinc boinc   2775040 Feb  3 03:00 result.tar.gz
03:00:38 (365): run_atlas exited; CPU time 59589.184426
03:00:38 (365): called boinc_finish(0)

</stderr_txt>
]]>

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