Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:55:45 (1035258): wrapper (7.7.26015): starting
13:55:45 (1035258): wrapper: running run_atlas (--nthreads 12)
[2026-02-02 13:55:45] Arguments: --nthreads 12
[2026-02-02 13:55:45] Threads: 12
[2026-02-02 13:55:45] Checking for CVMFS
[2026-02-02 13:55:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 13:55:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 13:55:45] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 13:55:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 13:55:46] 2.11.0.0 921820 5325 93268 155788 3 188 4360354 6144000 11889 130560 0 52731621 99.999 194891 163 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-02-02 13:55:46] CVMFS is ok
[2026-02-02 13:55:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 13:55:46] Checking for apptainer binary...
[2026-02-02 13:55:46] apptainer is not installed, using version from CVMFS
[2026-02-02 13:55:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 13:55:46] radiat0r
[2026-02-02 13:55:46] apptainer works
[2026-02-02 13:55:46] Set ATHENA_PROC_NUMBER=12
[2026-02-02 13:55:46] Set ATHENA_CORE_NUMBER=12
[2026-02-02 13:55:46] Starting ATLAS job with PandaID=6982026776
[2026-02-02 13:55:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 14:48:29]  *** The last 200 lines of the pilot log: ***
[2026-02-02 14:48:29]  protocol_id=None
[2026-02-02 14:48:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-02 14:48:29]  replicas=None
[2026-02-02 14:48:29]  scope=mc23_13p6TeV
[2026-02-02 14:48:29]  status=None
[2026-02-02 14:48:29]  status_code=0
[2026-02-02 14:48:29]  storage_token=
[2026-02-02 14:48:29]  surl=/var/lib/boinc/slots/11/PanDA_Pilot-6982026776/log.48310840._002690.job.log.tgz.1
[2026-02-02 14:48:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/28/log.48310840._002690.job.log.tgz.1
[2026-02-02 14:48:29]  workdir=None
[2026-02-02 14:48:29] ]
[2026-02-02 14:48:29] 2026-02-02 14:47:50,716 | INFO     | transferring file log.48310840._002690.job.log.tgz.1 from /var/lib/boinc/slots/11/PanDA_Pilot-6982026776/log.48310840._002690.job.log.tgz.1 to /var/lib/boinc/slots
[2026-02-02 14:48:29] 2026-02-02 14:47:50,716 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/11/PanDA_Pilot-6982026776/log.48310840._002690.job.log.tgz.1 /var/lib/boinc/slots/11/log.48310840._002690.j
[2026-02-02 14:48:29] 2026-02-02 14:47:50,740 | INFO     | adding to output.list: log.48310840._002690.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/28/log.48310840._002690.job.log.tg
[2026-02-02 14:48:29] 2026-02-02 14:47:50,741 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-02 14:48:29] 2026-02-02 14:47:50,742 | INFO     | summary of transferred files:
[2026-02-02 14:48:29] 2026-02-02 14:47:50,742 | INFO     |  -- lfn=log.48310840._002690.job.log.tgz.1, status_code=0, status=transferred
[2026-02-02 14:48:29] 2026-02-02 14:47:50,742 | INFO     | stage-out finished correctly
[2026-02-02 14:48:29] 2026-02-02 14:47:51,361 | INFO     | time since job start (3103s) is within the limit (349056.0s)
[2026-02-02 14:48:29] 2026-02-02 14:47:51,507 | WARNING  | process 1045582 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 14:48:29] 2026-02-02 14:47:51,507 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6982026776/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 14:48:29] 2026-02-02 14:47:52,302 | INFO     | number of running child processes to parent process 1045582: 1
[2026-02-02 14:48:29] 2026-02-02 14:47:52,302 | INFO     | maximum number of monitored processes: 6
[2026-02-02 14:48:29] 2026-02-02 14:47:52,809 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-02 14:48:29] 2026-02-02 14:47:53,465 | INFO     | PID=1039994 has CPU usage=24.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-02 14:48:29] 2026-02-02 14:47:53,465 | INFO     | .. there are 14 such processes running
[2026-02-02 14:48:29] 2026-02-02 14:47:54,466 | INFO     | time since job start (3106s) is within the limit (349056.0s)
[2026-02-02 14:48:29] 2026-02-02 14:47:54,804 | INFO     | monitor loop #217: job 0:6982026776 is in state 'finished'
[2026-02-02 14:48:29] 2026-02-02 14:47:54,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-02 14:48:29] 2026-02-02 14:47:54,810 | INFO     | job 6982026776 has state=finished
[2026-02-02 14:48:29] 2026-02-02 14:47:54,810 | INFO     | preparing for final server update for job 6982026776 in state='finished'
[2026-02-02 14:48:29] 2026-02-02 14:47:54,810 | INFO     | reading metadata from: /var/lib/boinc/slots/11/PanDA_Pilot-6982026776/jobReport.json
[2026-02-02 14:48:29] 2026-02-02 14:47:54,813 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/11/workernode_map.json
[2026-02-02 14:48:29] 2026-02-02 14:47:54,813 | INFO     | this job has now completed (state=finished)
[2026-02-02 14:48:29] 2026-02-02 14:47:54,814 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 14:48:29] 2026-02-02 14:47:54,814 | INFO     | log transfer has been attempted: DONE
[2026-02-02 14:48:29] 2026-02-02 14:47:54,814 | INFO     | job 6982026776 has finished - writing final server update
[2026-02-02 14:48:29] 2026-02-02 14:47:54,814 | INFO     | total number of processed events: 400 (read)
[2026-02-02 14:48:29] 2026-02-02 14:47:54,883 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6982026776/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 14:48:29] 2026-02-02 14:47:54,884 | INFO     | extracted standard info from prmon json
[2026-02-02 14:48:29] 2026-02-02 14:47:54,884 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 14:48:29] 2026-02-02 14:47:54,884 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 14:48:29] 2026-02-02 14:47:54,885 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 14:48:29] 2026-02-02 14:47:54,885 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 14:48:29] 2026-02-02 14:47:54,886 | INFO     | fitting pss+swap vs Time
[2026-02-02 14:48:29] 2026-02-02 14:47:54,886 | INFO     | sum of square deviations: 26400495.0
[2026-02-02 14:48:29] 2026-02-02 14:47:54,886 | INFO     | sum of deviations: 208771097.0
[2026-02-02 14:48:29] 2026-02-02 14:47:54,887 | INFO     | mean x: 1770042210.5
[2026-02-02 14:48:29] 2026-02-02 14:47:54,887 | INFO     | mean y: 2675334.3636363638
[2026-02-02 14:48:29] 2026-02-02 14:47:54,887 | INFO     | intersect: -13994549112.465483
[2026-02-02 14:48:29] 2026-02-02 14:47:54,887 | INFO     | chi2: 0.0010660472865325977
[2026-02-02 14:48:29] 2026-02-02 14:47:54,887 | INFO     | current memory leak: 7.91 B/s (using 44 data points, chi2=0.00)
[2026-02-02 14:48:29] 2026-02-02 14:47:54,887 | INFO     | could have reported an average CPU frequency of 2392 MHz (5 samples)
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | ..............................
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | . Timing measurements:
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | . get job = 0 s
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | . initial setup = 10 s
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | . payload setup = 7 s
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | . stage-in = 0 s
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | . payload execution = 3077 s
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | . stage-out = 0 s
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | . log creation = 0 s
[2026-02-02 14:48:29] 2026-02-02 14:47:54,888 | INFO     | ..............................
[2026-02-02 14:48:29] 2026-02-02 14:47:54,983 | INFO     | 
[2026-02-02 14:48:29] 2026-02-02 14:47:54,983 | INFO     | job summary report
[2026-02-02 14:48:29] 2026-02-02 14:47:54,983 | INFO     | --------------------------------------------------
[2026-02-02 14:48:29] 2026-02-02 14:47:54,983 | INFO     | PanDA job id: 6982026776
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | task id: 48310840
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | errors: (none)
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | pilot state: finished 
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | transexitcode: 0
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | exeerrorcode: 0
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | exeerrordiag: 
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | exitcode: 0
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | exitmsg: OK
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | cpuconsumptiontime: 33268 s
[2026-02-02 14:48:29] 2026-02-02 14:47:54,984 | INFO     | nevents: 400
[2026-02-02 14:48:29] 2026-02-02 14:47:54,985 | INFO     | neventsw: 0
[2026-02-02 14:48:29] 2026-02-02 14:47:54,985 | INFO     | pid: 1045582
[2026-02-02 14:48:29] 2026-02-02 14:47:54,985 | INFO     | pgrp: 1045582
[2026-02-02 14:48:29] 2026-02-02 14:47:54,985 | INFO     | corecount: 12
[2026-02-02 14:48:29] 2026-02-02 14:47:54,985 | INFO     | event service: False
[2026-02-02 14:48:29] 2026-02-02 14:47:54,985 | INFO     | sizes: {0: 2277812, 1: 2278273, 11: 2278273, 3089: 2303903, 3091: 2312903, 3094: 2312959, 3096: 2313313}
[2026-02-02 14:48:29] 2026-02-02 14:47:54,985 | INFO     | --------------------------------------------------
[2026-02-02 14:48:29] 2026-02-02 14:47:54,985 | INFO     | 
[2026-02-02 14:48:29] 2026-02-02 14:47:54,985 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-02-02 14:48:29] 2026-02-02 14:47:55,018 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,018 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,018 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,019 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,019 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,019 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,019 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,019 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,020 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 14:48:29] 2026-02-02 14:47:55,020 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,020 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 14:48:29] 2026-02-02 14:47:55,021 | INFO     | job 6982026776 has completed (purged errors)
[2026-02-02 14:48:29] 2026-02-02 14:47:55,021 | INFO     | overall cleanup function is called
[2026-02-02 14:48:29] 2026-02-02 14:47:56,028 | INFO     | --- collectZombieJob: --- 10, [1045582]
[2026-02-02 14:48:29] 2026-02-02 14:47:56,028 | INFO     | zombie collector waiting for pid 1045582
[2026-02-02 14:48:29] 2026-02-02 14:47:56,028 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 14:48:29] 2026-02-02 14:47:56,028 | INFO     | collected zombie processes
[2026-02-02 14:48:29] 2026-02-02 14:47:56,029 | INFO     | will attempt to kill all subprocesses of pid=1045582
[2026-02-02 14:48:29] 2026-02-02 14:47:56,703 | INFO     | process IDs to be killed: [1045582] (in reverse order)
[2026-02-02 14:48:29] 2026-02-02 14:47:56,953 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 14:48:29] 2026-02-02 14:47:56,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 14:48:29] 2026-02-02 14:47:56,984 | INFO     | did not find any defunct processes belonging to 1045582
[2026-02-02 14:48:29] 2026-02-02 14:47:57,012 | INFO     | did not find any defunct processes belonging to 1045582
[2026-02-02 14:48:29] 2026-02-02 14:47:57,012 | INFO     | ready for new job
[2026-02-02 14:48:29] 2026-02-02 14:47:57,012 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 14:48:29] 2026-02-02 14:47:57,014 | INFO     | **************************************
[2026-02-02 14:48:29] 2026-02-02 14:47:57,014 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 14:48:29] 2026-02-02 14:47:57,014 | INFO     | **************************************
[2026-02-02 14:48:29] 2026-02-02 14:47:57,015 | INFO     | 
[2026-02-02 14:48:29] 2026-02-02 14:47:57,050 | INFO     | architecture information:
[2026-02-02 14:48:29] 2026-02-02 14:47:57,050 | INFO     | executing command: cat /etc/os-release
[2026-02-02 14:48:29] 2026-02-02 14:47:57,076 | INFO     | cat /etc/os-release:
[2026-02-02 14:48:29] NAME="CentOS Linux"
[2026-02-02 14:48:29] VERSION="7 (Core)"
[2026-02-02 14:48:29] ID="centos"
[2026-02-02 14:48:29] ID_LIKE="rhel fedora"
[2026-02-02 14:48:29] VERSION_ID="7"
[2026-02-02 14:48:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 14:48:29] ANSI_COLOR="0;31"
[2026-02-02 14:48:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 14:48:29] HOME_URL="https://www.centos.org/"
[2026-02-02 14:48:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 14:48:29] 
[2026-02-02 14:48:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 14:48:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 14:48:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 14:48:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 14:48:29] 
[2026-02-02 14:48:29] 2026-02-02 14:47:57,076 | INFO     | **************************************
[2026-02-02 14:48:29] 2026-02-02 14:47:57,579 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-02-02 14:48:29] 2026-02-02 14:47:57,606 | INFO     | sufficient remaining disk space (1697441120256 B)
[2026-02-02 14:48:29] 2026-02-02 14:47:57,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 14:48:29] 2026-02-02 14:47:57,606 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 14:48:29] 2026-02-02 14:47:57,606 | INFO     | update_server=False
[2026-02-02 14:48:29] 2026-02-02 14:47:57,606 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 14:48:29] 2026-02-02 14:47:57,672 | INFO     | all payload control threads have been joined
[2026-02-02 14:48:29] 2026-02-02 14:47:58,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 14:48:29] 2026-02-02 14:47:58,313 | INFO     | aborting loop
[2026-02-02 14:48:29] 2026-02-02 14:47:58,371 | INFO     | all data control threads have been joined
[2026-02-02 14:48:29] 2026-02-02 14:47:58,568 | INFO     | all job control threads have been joined
[2026-02-02 14:48:29] 2026-02-02 14:47:58,609 | INFO     | [job] retrieve thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:58,676 | INFO     | [payload] control thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:58,704 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:58,828 | INFO     | [payload] failed_post thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:58,853 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 14:48:29] 2026-02-02 14:47:58,906 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:58,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 14:48:29] 2026-02-02 14:47:59,229 | INFO     | [data] copytool_in thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:59,316 | INFO     | [job] job monitor thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:59,342 | INFO     | [payload] validate_post thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:59,377 | INFO     | [data] control thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:59,573 | INFO     | [job] control thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:59,892 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:59,913 | INFO     | [job] validate thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:47:59,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 14:48:29] 2026-02-02 14:48:00,858 | INFO     | [data] copytool_out thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:48:00,996 | INFO     | [job] queue monitor thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:48:02,922 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:48:07,940 | INFO     | job.realtimelogging is not enabled
[2026-02-02 14:48:29] 2026-02-02 14:48:08,945 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 14:48:29] 2026-02-02 14:48:12,611 | INFO     | [monitor] cgroup control has ended
[2026-02-02 14:48:29] 2026-02-02 14:48:14,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393044457280)>', '<ExcThread(monitor, started 140392473290496)>']
[2026-02-02 14:48:29] 2026-02-02 14:48:19,666 | INFO     | all workflow threads have been joined
[2026-02-02 14:48:29] 2026-02-02 14:48:19,667 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 14:48:29] 2026-02-02 14:48:19,667 | INFO     | traces error code: 0
[2026-02-02 14:48:29] 2026-02-02 14:48:19,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 14:48:29] 2026-02-02 14:48:28,570 | INFO     | PID=1039994 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 14:48:29] 2026-02-02 14:48:28,571 | INFO     | .. there are 14 such processes running
[2026-02-02 14:48:29] 2026-02-02 14:48:28,571 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 14:48:29] 2026-02-02 14:48:28,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 14:48:29] 2026-02-02 14:48:28,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 14:48:29] 2026-02-02 14:48:28,571 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 14:48:29] 2026-02-02 14:48:28,571 | CRITICAL | thread 'MainThread' is not alive
[2026-02-02 14:48:29] 2026-02-02 14:48:28,571 | INFO     | [monitor] control thread has ended
[2026-02-02 14:48:29] 2026-02-02 14:48:28,744 [wrapper] ==== pilot stdout END ====
[2026-02-02 14:48:29] 2026-02-02 14:48:28,748 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 14:48:29] 2026-02-02 14:48:28,752 [wrapper] pilotpid: 1039994
[2026-02-02 14:48:29] 2026-02-02 14:48:28,755 [wrapper] Pilot exit status: 0
[2026-02-02 14:48:29] 2026-02-02 14:48:28,766 [wrapper] pandaids: 6982026776
[2026-02-02 14:48:29] 2026-02-02 14:48:28,942 [wrapper] cleanup supervisor_pilot 1196485 1039995
[2026-02-02 14:48:29] 2026-02-02 14:48:28,948 [wrapper] Test setup, not cleaning
[2026-02-02 14:48:29] 2026-02-02 14:48:28,953 [wrapper] apfmon messages muted
[2026-02-02 14:48:29] 2026-02-02 14:48:28,956 [wrapper] ==== wrapper stdout END ====
[2026-02-02 14:48:29] 2026-02-02 14:48:28,959 [wrapper] ==== wrapper stderr END ====
[2026-02-02 14:48:29]  *** Error codes and diagnostics ***
[2026-02-02 14:48:29]     "exeErrorCode": 0,
[2026-02-02 14:48:29]     "exeErrorDiag": "",
[2026-02-02 14:48:29]     "pilotErrorCode": 0,
[2026-02-02 14:48:29]     "pilotErrorDiag": "",
[2026-02-02 14:48:29]  *** Listing of results directory ***
[2026-02-02 14:48:29] total 718900
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc    584422 Jan 25 02:18 pilot3.tar.gz
[2026-02-02 14:48:29] -rwx------ 1 boinc boinc     36322 Jan 25 02:18 runpilot2-wrapper.sh
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc      5111 Jan 25 02:19 queuedata.json
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc       100 Feb  2 13:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 14:48:29] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 13:55 run_atlas
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc       105 Feb  2 13:55 job.xml
[2026-02-02 14:48:29] -rw-r--r-- 2 boinc boinc     15845 Feb  2 13:55 start_atlas.sh
[2026-02-02 14:48:29] drwxrwx--x 2 boinc boinc      4096 Feb  2 13:55 shared
[2026-02-02 14:48:29] -rw-r--r-- 2 boinc boinc    597754 Feb  2 13:55 input.tar.gz
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc      9417 Feb  2 13:55 init_data.xml
[2026-02-02 14:48:29] -rw-r--r-- 2 boinc boinc 533043855 Feb  2 13:55 EVNT.48310836._000058.pool.root.1
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc         0 Feb  2 13:55 boinc_setup_complete
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc         0 Feb  2 13:55 boinc_lockfile
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc      2502 Feb  2 13:55 pandaJob.out
[2026-02-02 14:48:29] -rw------- 1 boinc boinc   1009833 Feb  2 13:55 agis_schedconf.cvmfs.json
[2026-02-02 14:48:29] -rw------- 1 boinc boinc   1511668 Feb  2 13:56 agis_ddmendpoints.agis.ALL.json
[2026-02-02 14:48:29] -rw------- 1 boinc boinc       420 Feb  2 13:56 workernode_map.json
[2026-02-02 14:48:29] drwx------ 5 boinc boinc      4096 Feb  2 13:56 pilot3
[2026-02-02 14:48:29] -rw------- 1 boinc boinc 197458377 Feb  2 14:47 HITS.48310840._002690.pool.root.1
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc       530 Feb  2 14:47 boinc_task_state.xml
[2026-02-02 14:48:29] -rw------- 1 boinc boinc        95 Feb  2 14:47 pilot_heartbeat.json
[2026-02-02 14:48:29] -rw------- 1 boinc boinc      1024 Feb  2 14:47 memory_monitor_summary.json
[2026-02-02 14:48:29] -rw------- 1 boinc boinc    393705 Feb  2 14:47 log.48310840._002690.job.log.tgz.1
[2026-02-02 14:48:29] -rw------- 1 boinc boinc      6283 Feb  2 14:47 heartbeat.json
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc      8192 Feb  2 14:48 boinc_mmap_file
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc        27 Feb  2 14:48 wrapper_checkpoint.txt
[2026-02-02 14:48:29] -rw------- 1 boinc boinc       893 Feb  2 14:48 pilotlog.txt
[2026-02-02 14:48:29] -rw------- 1 boinc boinc    461204 Feb  2 14:48 log.48310840._002690.job.log.1
[2026-02-02 14:48:29] -rw------- 1 boinc boinc       357 Feb  2 14:48 output.list
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc       620 Feb  2 14:48 runtime_log
[2026-02-02 14:48:29] -rw------- 1 boinc boinc    870400 Feb  2 14:48 result.tar.gz
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc      8787 Feb  2 14:48 runtime_log.err
[2026-02-02 14:48:29] -rw------- 1 boinc boinc       643 Feb  2 14:48 16LKDm9s438nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGS6KDm16d3Ro.diag
[2026-02-02 14:48:29] -rw-r--r-- 1 boinc boinc     21580 Feb  2 14:48 stderr.txt
[2026-02-02 14:48:29] HITS file was successfully produced:
[2026-02-02 14:48:29] -rw------- 1 boinc boinc 197458377 Feb  2 14:47 shared/HITS.pool.root.1
[2026-02-02 14:48:29]  *** Contents of shared directory: ***
[2026-02-02 14:48:29] total 714844
[2026-02-02 14:48:29] -rw-r--r-- 2 boinc boinc     15845 Feb  2 13:55 start_atlas.sh
[2026-02-02 14:48:29] -rw-r--r-- 2 boinc boinc    597754 Feb  2 13:55 input.tar.gz
[2026-02-02 14:48:29] -rw-r--r-- 2 boinc boinc 533043855 Feb  2 13:55 ATLAS.root_0
[2026-02-02 14:48:29] -rw------- 1 boinc boinc 197458377 Feb  2 14:47 HITS.pool.root.1
[2026-02-02 14:48:29] -rw------- 1 boinc boinc    870400 Feb  2 14:48 result.tar.gz
14:48:30 (1035258): run_atlas exited; CPU time 33463.710874
14:48:30 (1035258): called boinc_finish(0)

</stderr_txt>
]]>

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