Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:37:42 (31647): wrapper (7.7.26015): starting
16:37:42 (31647): wrapper: running run_atlas (--nthreads 8)
[2026-02-02 16:37:42] Arguments: --nthreads 8
[2026-02-02 16:37:42] Threads: 8
[2026-02-02 16:37:42] Checking for CVMFS
[2026-02-02 16:37:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 16:37:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 16:37:42] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 16:37:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 16:37:42] 2.11.0.0 4268 163423 85564 155792 2 13 2795389 4096001 78 130560 2 8771197 99.462 8892344 459 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-02 16:37:42] CVMFS is ok
[2026-02-02 16:37:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 16:37:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 16:37:42] Further information can be found at the LHC@home message board.
[2026-02-02 16:37:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 16:37:42] Checking for apptainer binary...
[2026-02-02 16:37:42] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-02 16:37:42] apptainer is not installed, using version from CVMFS
[2026-02-02 16:37:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 16:37:42] WARNING: Environment variable TMPDIR already has value [/tmp/job_11073426/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node064
[2026-02-02 16:37:42] apptainer works
[2026-02-02 16:37:42] Set ATHENA_PROC_NUMBER=8
[2026-02-02 16:37:42] Set ATHENA_CORE_NUMBER=8
[2026-02-02 16:37:42] Starting ATLAS job with PandaID=6993186477
[2026-02-02 16:37:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11073426/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 17:56:27]  *** The last 200 lines of the pilot log: ***
[2026-02-02 17:56:27]  direct_access_wan=False
[2026-02-02 17:56:27]  domain=
[2026-02-02 17:56:27]  filesize=346334
[2026-02-02 17:56:27]  filetype=log
[2026-02-02 17:56:27]  guid=6fbfdb3b-7b54-4bed-b1f9-6aa8e64ca7fe
[2026-02-02 17:56:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-02 17:56:27]  is_altstaged=None
[2026-02-02 17:56:27]  is_tar=False
[2026-02-02 17:56:27]  lfn=log.48442031._000833.job.log.tgz.1
[2026-02-02 17:56:27]  mtime=0
[2026-02-02 17:56:27]  protocol_id=None
[2026-02-02 17:56:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-02 17:56:27]  replicas=None
[2026-02-02 17:56:27]  scope=mc23_13p6TeV
[2026-02-02 17:56:27]  status=None
[2026-02-02 17:56:27]  status_code=0
[2026-02-02 17:56:27]  storage_token=
[2026-02-02 17:56:27]  surl=/tmp/job_11073426/atlas/pilot/slots/0/PanDA_Pilot-6993186477/log.48442031._000833.job.log.tgz.1
[2026-02-02 17:56:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/0a/log.48442031._000833.job.log.tgz.1
[2026-02-02 17:56:27]  workdir=None
[2026-02-02 17:56:27] ]
[2026-02-02 17:56:27] 2026-02-02 16:55:47,947 | INFO     | transferring file log.48442031._000833.job.log.tgz.1 from /tmp/job_11073426/atlas/pilot/slots/0/PanDA_Pilot-6993186477/log.48442031._000833.job.log.tgz.1 to /tmp/j
[2026-02-02 17:56:27] 2026-02-02 16:55:47,947 | INFO     | executing command: /usr/bin/env mv /tmp/job_11073426/atlas/pilot/slots/0/PanDA_Pilot-6993186477/log.48442031._000833.job.log.tgz.1 /tmp/job_11073426/atlas/pilot/sl
[2026-02-02 17:56:27] 2026-02-02 16:55:47,955 | INFO     | adding to output.list: log.48442031._000833.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/0a/log.48442031._000833.job.log.tg
[2026-02-02 17:56:27] 2026-02-02 16:55:47,956 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-02 17:56:27] 2026-02-02 16:55:47,956 | INFO     | summary of transferred files:
[2026-02-02 17:56:27] 2026-02-02 16:55:47,956 | INFO     |  -- lfn=log.48442031._000833.job.log.tgz.1, status_code=0, status=transferred
[2026-02-02 17:56:27] 2026-02-02 16:55:47,956 | INFO     | stage-out finished correctly
[2026-02-02 17:56:27] 2026-02-02 16:55:48,220 | INFO     | monitor loop #405: job 0:6993186477 is in state 'finished'
[2026-02-02 17:56:27] 2026-02-02 16:55:48,220 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,245 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-02 17:56:27] 2026-02-02 16:55:48,294 | INFO     | job 6993186477 has state=finished
[2026-02-02 17:56:27] 2026-02-02 16:55:48,294 | INFO     | preparing for final server update for job 6993186477 in state='finished'
[2026-02-02 17:56:27] 2026-02-02 16:55:48,294 | INFO     | reading metadata from: /tmp/job_11073426/atlas/pilot/slots/0/PanDA_Pilot-6993186477/jobReport.json
[2026-02-02 17:56:27] 2026-02-02 16:55:48,295 | INFO     | added worker_node to metadata from /tmp/job_11073426/atlas/pilot/slots/0/workernode_map.json
[2026-02-02 17:56:27] 2026-02-02 16:55:48,295 | INFO     | this job has now completed (state=finished)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,295 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,295 | INFO     | log transfer has been attempted: DONE
[2026-02-02 17:56:27] 2026-02-02 16:55:48,295 | INFO     | job 6993186477 has finished - writing final server update
[2026-02-02 17:56:27] 2026-02-02 16:55:48,295 | INFO     | total number of processed events: 400 (read)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,301 | INFO     | using path: /tmp/job_11073426/atlas/pilot/slots/0/PanDA_Pilot-6993186477/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,301 | INFO     | extracted standard info from prmon json
[2026-02-02 17:56:27] 2026-02-02 16:55:48,301 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 17:56:27] 2026-02-02 16:55:48,301 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 17:56:27] 2026-02-02 16:55:48,301 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 17:56:27] 2026-02-02 16:55:48,301 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 17:56:27] 2026-02-02 16:55:48,302 | INFO     | fitting pss+swap vs Time
[2026-02-02 17:56:27] 2026-02-02 16:55:48,302 | INFO     | sum of square deviations: 93240818.0
[2026-02-02 17:56:27] 2026-02-02 16:55:48,302 | INFO     | sum of deviations: 62666242328.000015
[2026-02-02 17:56:27] 2026-02-02 16:55:48,302 | INFO     | mean x: 1770049199.0
[2026-02-02 17:56:27] 2026-02-02 16:55:48,302 | INFO     | mean y: 1841548.0746268656
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | intersect: -1189630922473.969
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | chi2: 8.553512534844078
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | current memory leak: 672.09 B/s (using 67 data points, chi2=8.55)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | could have reported an average CPU frequency of 2474 MHz (6 samples)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | ..............................
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | . Timing measurements:
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | . get job = 0 s
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | . initial setup = 12 s
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | . payload setup = 167 s
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | . stage-in = 0 s
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | . payload execution = 4468 s
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | . stage-out = 0 s
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | . log creation = 0 s
[2026-02-02 17:56:27] 2026-02-02 16:55:48,303 | INFO     | ..............................
[2026-02-02 17:56:27] 2026-02-02 16:55:48,356 | INFO     | 
[2026-02-02 17:56:27] 2026-02-02 16:55:48,356 | INFO     | job summary report
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | --------------------------------------------------
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | PanDA job id: 6993186477
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | task id: 48442031
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | errors: (none)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | pilot state: finished 
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | transexitcode: 0
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | exeerrorcode: 0
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | exeerrordiag: 
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | exitcode: 0
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | exitmsg: OK
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | cpuconsumptiontime: 19064 s
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | nevents: 400
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | neventsw: 0
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | pid: 11128
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | pgrp: 11128
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | corecount: 8
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | event service: False
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | sizes: {0: 2278138, 1: 2278400, 11: 2278428, 4639: 2304607, 4640: 2313635, 4641: 2314013}
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | --------------------------------------------------
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | 
[2026-02-02 17:56:27] 2026-02-02 16:55:48,357 | INFO     | executing command: ls -lF /tmp/job_11073426/atlas/pilot/slots/0
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,367 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | job 6993186477 has completed (purged errors)
[2026-02-02 17:56:27] 2026-02-02 16:55:48,368 | INFO     | overall cleanup function is called
[2026-02-02 17:56:27] 2026-02-02 16:55:49,374 | INFO     | --- collectZombieJob: --- 10, [11128]
[2026-02-02 17:56:27] 2026-02-02 16:55:49,374 | INFO     | zombie collector waiting for pid 11128
[2026-02-02 17:56:27] 2026-02-02 16:55:49,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 17:56:27] 2026-02-02 16:55:49,374 | INFO     | collected zombie processes
[2026-02-02 17:56:27] 2026-02-02 16:55:49,374 | INFO     | will attempt to kill all subprocesses of pid=11128
[2026-02-02 17:56:27] 2026-02-02 16:55:49,501 | INFO     | process IDs to be killed: [11128] (in reverse order)
[2026-02-02 17:56:27] 2026-02-02 16:55:49,541 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 17:56:27] 2026-02-02 16:55:49,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 17:56:27] 2026-02-02 16:55:49,546 | INFO     | did not find any defunct processes belonging to 11128
[2026-02-02 17:56:27] 2026-02-02 16:55:49,550 | INFO     | did not find any defunct processes belonging to 11128
[2026-02-02 17:56:27] 2026-02-02 16:55:49,550 | INFO     | ready for new job
[2026-02-02 17:56:27] 2026-02-02 16:55:49,550 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 17:56:27] 2026-02-02 16:55:49,550 | INFO     | **************************************
[2026-02-02 17:56:27] 2026-02-02 16:55:49,550 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 17:56:27] 2026-02-02 16:55:49,550 | INFO     | **************************************
[2026-02-02 17:56:27] 2026-02-02 16:55:49,551 | INFO     | 
[2026-02-02 17:56:27] 2026-02-02 16:55:49,552 | INFO     | architecture information:
[2026-02-02 17:56:27] 2026-02-02 16:55:49,552 | INFO     | executing command: cat /etc/os-release
[2026-02-02 17:56:27] 2026-02-02 16:55:49,559 | INFO     | cat /etc/os-release:
[2026-02-02 17:56:27] NAME="CentOS Linux"
[2026-02-02 17:56:27] VERSION="7 (Core)"
[2026-02-02 17:56:27] ID="centos"
[2026-02-02 17:56:27] ID_LIKE="rhel fedora"
[2026-02-02 17:56:27] VERSION_ID="7"
[2026-02-02 17:56:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 17:56:27] ANSI_COLOR="0;31"
[2026-02-02 17:56:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 17:56:27] HOME_URL="https://www.centos.org/"
[2026-02-02 17:56:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 17:56:27] 
[2026-02-02 17:56:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 17:56:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 17:56:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 17:56:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 17:56:27] 
[2026-02-02 17:56:27] 2026-02-02 16:55:49,559 | INFO     | **************************************
[2026-02-02 17:56:27] 2026-02-02 16:55:50,062 | INFO     | executing command: df -mP /tmp/job_11073426/atlas/pilot/slots/0
[2026-02-02 17:56:27] 2026-02-02 16:55:50,069 | INFO     | sufficient remaining disk space (221801086976 B)
[2026-02-02 17:56:27] 2026-02-02 16:55:50,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 17:56:27] 2026-02-02 16:55:50,070 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 17:56:27] 2026-02-02 16:55:50,070 | INFO     | update_server=False
[2026-02-02 17:56:27] 2026-02-02 16:55:50,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 17:56:27] 2026-02-02 16:55:50,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 17:56:27] 2026-02-02 16:55:50,070 | INFO     | aborting loop
[2026-02-02 17:56:27] 2026-02-02 16:55:50,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 17:56:27] 2026-02-02 16:55:50,070 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 17:56:27] 2026-02-02 16:55:50,403 | INFO     | all payload control threads have been joined
[2026-02-02 17:56:27] 2026-02-02 16:55:50,431 | INFO     | all job control threads have been joined
[2026-02-02 17:56:27] 2026-02-02 16:55:50,871 | INFO     | all data control threads have been joined
[2026-02-02 17:56:27] 2026-02-02 16:55:51,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 17:56:27] 2026-02-02 16:55:51,074 | INFO     | [job] queue monitor thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,075 | INFO     | [job] retrieve thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,075 | INFO     | [job] job monitor thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,224 | INFO     | [payload] validate_post thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,291 | INFO     | [job] validate thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,335 | INFO     | [payload] failed_post thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,400 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,408 | INFO     | [payload] control thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,436 | INFO     | [job] control thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,454 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,725 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:51,876 | INFO     | [data] control thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:52,030 | INFO     | [data] copytool_in thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:52,481 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:53,017 | INFO     | [data] copytool_out thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:55:54,076 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 17:56:27] 2026-02-02 16:56:20,388 | INFO     | PID=7067 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-02 17:56:27] 2026-02-02 16:56:20,388 | INFO     | .. there are 6 such processes running
[2026-02-02 17:56:27] 2026-02-02 16:56:20,388 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 17:56:27] 2026-02-02 16:56:20,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 17:56:27] 2026-02-02 16:56:20,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 17:56:27] 2026-02-02 16:56:21,162 | INFO     | [monitor] cgroup control has ended
[2026-02-02 17:56:27] 2026-02-02 16:56:22,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058988288)>']
[2026-02-02 17:56:27] 2026-02-02 16:56:23,404 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 17:56:27] 2026-02-02 16:56:23,404 | INFO     | [monitor] control thread has ended
[2026-02-02 17:56:27] 2026-02-02 16:56:27,572 | INFO     | all workflow threads have been joined
[2026-02-02 17:56:27] 2026-02-02 16:56:27,572 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 17:56:27] 2026-02-02 16:56:27,572 | INFO     | traces error code: 0
[2026-02-02 17:56:27] 2026-02-02 16:56:27,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 17:56:27] 2026-02-02 16:56:27,638 [wrapper] ==== pilot stdout END ====
[2026-02-02 17:56:27] 2026-02-02 16:56:27,639 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 17:56:27] 2026-02-02 16:56:27,640 [wrapper] pilotpid: 7067
[2026-02-02 17:56:27] 2026-02-02 16:56:27,641 [wrapper] Pilot exit status: 0
[2026-02-02 17:56:27] 2026-02-02 16:56:27,707 [wrapper] pandaids: 6993186477
[2026-02-02 17:56:27] 2026-02-02 16:56:27,730 [wrapper] cleanup supervisor_pilot 21167 7069
[2026-02-02 17:56:27] 2026-02-02 16:56:27,732 [wrapper] Test setup, not cleaning
[2026-02-02 17:56:27] 2026-02-02 16:56:27,733 [wrapper] apfmon messages muted
[2026-02-02 17:56:27] 2026-02-02 16:56:27,734 [wrapper] ==== wrapper stdout END ====
[2026-02-02 17:56:27] 2026-02-02 16:56:27,735 [wrapper] ==== wrapper stderr END ====
[2026-02-02 17:56:27]  *** Error codes and diagnostics ***
[2026-02-02 17:56:27]     "exeErrorCode": 0,
[2026-02-02 17:56:27]     "exeErrorDiag": "",
[2026-02-02 17:56:27]     "pilotErrorCode": 0,
[2026-02-02 17:56:27]     "pilotErrorDiag": "",
[2026-02-02 17:56:27]  *** Listing of results directory ***
[2026-02-02 17:56:27] total 671464
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user    584422 Feb  2 04:02 pilot3.tar.gz
[2026-02-02 17:56:27] -rwx------ 1 mf493845 unix-user     36322 Feb  2 04:06 runpilot2-wrapper.sh
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user      5111 Feb  2 04:10 queuedata.json
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user       100 Feb  2 14:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 17:56:27] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  2 14:30 run_atlas
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user       105 Feb  2 14:30 job.xml
[2026-02-02 17:56:27] -rw-r--r-- 2 mf493845 unix-user 500339945 Feb  2 16:37 EVNT.48442027._000017.pool.root.1
[2026-02-02 17:56:27] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  2 16:37 start_atlas.sh
[2026-02-02 17:56:27] drwxrwx--x 2 mf493845 unix-user       100 Feb  2 16:37 shared
[2026-02-02 17:56:27] -rw-r--r-- 2 mf493845 unix-user    597754 Feb  2 16:37 input.tar.gz
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user      6389 Feb  2 16:37 init_data.xml
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user         0 Feb  2 16:37 boinc_setup_complete
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user      8192 Feb  2 16:37 boinc_mmap_file
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user         0 Feb  2 16:37 boinc_lockfile
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user      2527 Feb  2 16:37 pandaJob.out
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user   1009772 Feb  2 16:38 agis_schedconf.cvmfs.json
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user   1511668 Feb  2 16:38 agis_ddmendpoints.agis.ALL.json
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user       420 Feb  2 16:38 workernode_map.json
[2026-02-02 17:56:27] drwx------ 5 mf493845 unix-user       440 Feb  2 16:38 pilot3
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user 181229028 Feb  2 17:55 HITS.48442031._000833.pool.root.1
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user      1017 Feb  2 17:55 memory_monitor_summary.json
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user    346334 Feb  2 17:55 log.48442031._000833.job.log.tgz.1
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user      6325 Feb  2 17:55 heartbeat.json
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user        95 Feb  2 17:56 pilot_heartbeat.json
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user      4830 Feb  2 17:56 pilotlog.txt
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user    703396 Feb  2 17:56 log.48442031._000833.job.log.1
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user       357 Feb  2 17:56 output.list
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user       620 Feb  2 17:56 runtime_log
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user   1064960 Feb  2 17:56 result.tar.gz
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user      9219 Feb  2 17:56 runtime_log.err
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user       645 Feb  2 17:56 0mmKDmzRz68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm1uRKDmzzHbFm.diag
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user     21552 Feb  2 17:56 stderr.txt
[2026-02-02 17:56:27] HITS file was successfully produced:
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user 181229028 Feb  2 17:55 shared/HITS.pool.root.1
[2026-02-02 17:56:27]  *** Contents of shared directory: ***
[2026-02-02 17:56:27] total 667240
[2026-02-02 17:56:27] -rw-r--r-- 2 mf493845 unix-user 500339945 Feb  2 16:37 ATLAS.root_0
[2026-02-02 17:56:27] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  2 16:37 start_atlas.sh
[2026-02-02 17:56:27] -rw-r--r-- 2 mf493845 unix-user    597754 Feb  2 16:37 input.tar.gz
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user 181229028 Feb  2 17:55 HITS.pool.root.1
[2026-02-02 17:56:27] -rw------- 1 mf493845 unix-user   1064960 Feb  2 17:56 result.tar.gz
17:56:29 (31647): run_atlas exited; CPU time 19130.837129
17:56:29 (31647): called boinc_finish(0)

</stderr_txt>
]]>

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