Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:24:23 (885581): wrapper (7.7.26015): starting
04:24:23 (885581): wrapper: running run_atlas (--nthreads 10)
[2026-02-02 04:24:23] Arguments: --nthreads 10
[2026-02-02 04:24:23] Threads: 10
[2026-02-02 04:24:23] Checking for CVMFS
[2026-02-02 04:24:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 04:24:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 04:24:23] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 04:24:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 04:24:24] 2.13.3.0 12846 127739 185732 155781 1 337 32033462 32935936 24543 16776704 0 576637983 99.485 796684624 37986 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-02 04:24:24] CVMFS is ok
[2026-02-02 04:24:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 04:24:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 04:24:24] Further information can be found at the LHC@home message board.
[2026-02-02 04:24:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 04:24:24] Checking for apptainer binary...
[2026-02-02 04:24:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 04:24:24] Running /usr/bin/apptainer --version
[2026-02-02 04:24:24] apptainer version 1.4.5-2.el9
[2026-02-02 04:24:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 04:24:24] c7-16-9.aglt2.org
[2026-02-02 04:24:24] apptainer works
[2026-02-02 04:24:24] Set ATHENA_PROC_NUMBER=10
[2026-02-02 04:24:24] Set ATHENA_CORE_NUMBER=10
[2026-02-02 04:24:24] Starting ATLAS job with PandaID=6995620131
[2026-02-02 04:24:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 06:00:05]  *** The last 200 lines of the pilot log: ***
[2026-02-02 06:00:05]  filetype=log
[2026-02-02 06:00:05]  guid=63c77b0c-acf7-495e-a604-f358de00bd75
[2026-02-02 06:00:05]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-02 06:00:05]  is_altstaged=None
[2026-02-02 06:00:05]  is_tar=False
[2026-02-02 06:00:05]  lfn=log.48431080._004979.job.log.tgz.1
[2026-02-02 06:00:05]  mtime=0
[2026-02-02 06:00:05]  protocol_id=None
[2026-02-02 06:00:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-02 06:00:05]  replicas=None
[2026-02-02 06:00:05]  scope=mc23_13p6TeV
[2026-02-02 06:00:05]  status=None
[2026-02-02 06:00:05]  status_code=0
[2026-02-02 06:00:05]  storage_token=
[2026-02-02 06:00:05]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6995620131/log.48431080._004979.job.log.tgz.1
[2026-02-02 06:00:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7b/0a/log.48431080._004979.job.log.tgz.1
[2026-02-02 06:00:05]  workdir=None
[2026-02-02 06:00:05] ]
[2026-02-02 06:00:05] 2026-02-02 10:59:22,382 | INFO     | transferring file log.48431080._004979.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6995620131/log.48431080._004979.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-02 06:00:05] 2026-02-02 10:59:22,383 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6995620131/log.48431080._004979.job.log.tgz.1 /tmp/boinchome/slots/3/log.48431080._004979.job
[2026-02-02 06:00:05] 2026-02-02 10:59:22,400 | INFO     | adding to output.list: log.48431080._004979.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7b/0a/log.48431080._004979.job.log.tg
[2026-02-02 06:00:05] 2026-02-02 10:59:22,401 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-02 06:00:05] 2026-02-02 10:59:22,401 | INFO     | summary of transferred files:
[2026-02-02 06:00:05] 2026-02-02 10:59:22,401 | INFO     |  -- lfn=log.48431080._004979.job.log.tgz.1, status_code=0, status=transferred
[2026-02-02 06:00:05] 2026-02-02 10:59:22,401 | INFO     | stage-out finished correctly
[2026-02-02 06:00:05] 2026-02-02 10:59:22,473 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-02 06:00:05] 2026-02-02 10:59:22,814 | INFO     | time since job start (5672s) is within the limit (349056.0s)
[2026-02-02 06:00:05] 2026-02-02 10:59:23,049 | WARNING  | process 895662 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 06:00:05] 2026-02-02 10:59:23,049 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6995620131/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 06:00:05] 2026-02-02 10:59:23,530 | INFO     | number of running child processes to parent process 895662: 1
[2026-02-02 06:00:05] 2026-02-02 10:59:23,530 | INFO     | maximum number of monitored processes: 6
[2026-02-02 06:00:05] 2026-02-02 10:59:24,511 | INFO     | job 6995620131 has state=finished
[2026-02-02 06:00:05] 2026-02-02 10:59:24,511 | INFO     | preparing for final server update for job 6995620131 in state='finished'
[2026-02-02 06:00:05] 2026-02-02 10:59:24,511 | INFO     | reading metadata from: /tmp/boinchome/slots/3/PanDA_Pilot-6995620131/jobReport.json
[2026-02-02 06:00:05] 2026-02-02 10:59:24,513 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/3/workernode_map.json
[2026-02-02 06:00:05] 2026-02-02 10:59:24,513 | INFO     | this job has now completed (state=finished)
[2026-02-02 06:00:05] 2026-02-02 10:59:24,513 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 06:00:05] 2026-02-02 10:59:24,514 | INFO     | log transfer has been attempted: DONE
[2026-02-02 06:00:05] 2026-02-02 10:59:24,514 | INFO     | job 6995620131 has finished - writing final server update
[2026-02-02 06:00:05] 2026-02-02 10:59:24,514 | INFO     | total number of processed events: 400 (read)
[2026-02-02 06:00:05] 2026-02-02 10:59:24,530 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6995620131/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 06:00:05] 2026-02-02 10:59:24,530 | INFO     | extracted standard info from prmon json
[2026-02-02 06:00:05] 2026-02-02 10:59:24,530 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 06:00:05] 2026-02-02 10:59:24,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 06:00:05] 2026-02-02 10:59:24,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 06:00:05] 2026-02-02 10:59:24,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 06:00:05] 2026-02-02 10:59:24,533 | INFO     | fitting pss+swap vs Time
[2026-02-02 06:00:05] 2026-02-02 10:59:24,533 | INFO     | sum of square deviations: 197200343.48837242
[2026-02-02 06:00:05] 2026-02-02 10:59:24,533 | INFO     | sum of deviations: -10443497948.27907
[2026-02-02 06:00:05] 2026-02-02 10:59:24,533 | INFO     | mean x: 1770027215.511628
[2026-02-02 06:00:05] 2026-02-02 10:59:24,533 | INFO     | mean y: 2777379.7790697673
[2026-02-02 06:00:05] 2026-02-02 10:59:24,533 | INFO     | intersect: 93741334152.03821
[2026-02-02 06:00:05] 2026-02-02 10:59:24,534 | INFO     | chi2: 0.0340196731195939
[2026-02-02 06:00:05] 2026-02-02 10:59:24,534 | INFO     | current memory leak: -52.96 B/s (using 86 data points, chi2=0.03)
[2026-02-02 06:00:05] 2026-02-02 10:59:24,534 | INFO     | could have reported an average CPU frequency of 3181 MHz (7 samples)
[2026-02-02 06:00:05] 2026-02-02 10:59:24,534 | INFO     | ..............................
[2026-02-02 06:00:05] 2026-02-02 10:59:24,534 | INFO     | . Timing measurements:
[2026-02-02 06:00:05] 2026-02-02 10:59:24,534 | INFO     | . get job = 0 s
[2026-02-02 06:00:05] 2026-02-02 10:59:24,534 | INFO     | . initial setup = 9 s
[2026-02-02 06:00:05] 2026-02-02 10:59:24,535 | INFO     | . payload setup = 10 s
[2026-02-02 06:00:05] 2026-02-02 10:59:24,535 | INFO     | . stage-in = 0 s
[2026-02-02 06:00:05] 2026-02-02 10:59:24,535 | INFO     | . payload execution = 5644 s
[2026-02-02 06:00:05] 2026-02-02 10:59:24,535 | INFO     | . stage-out = 0 s
[2026-02-02 06:00:05] 2026-02-02 10:59:24,535 | INFO     | . log creation = 0 s
[2026-02-02 06:00:05] 2026-02-02 10:59:24,535 | INFO     | ..............................
[2026-02-02 06:00:05] 2026-02-02 10:59:24,611 | INFO     | 
[2026-02-02 06:00:05] 2026-02-02 10:59:24,611 | INFO     | job summary report
[2026-02-02 06:00:05] 2026-02-02 10:59:24,611 | INFO     | --------------------------------------------------
[2026-02-02 06:00:05] 2026-02-02 10:59:24,611 | INFO     | PanDA job id: 6995620131
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | task id: 48431080
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | errors: (none)
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | pilot state: finished 
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | transexitcode: 0
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | exeerrorcode: 0
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | exeerrordiag: 
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | exitcode: 0
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | exitmsg: OK
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | cpuconsumptiontime: 42673 s
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | nevents: 400
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | neventsw: 0
[2026-02-02 06:00:05] 2026-02-02 10:59:24,612 | INFO     | pid: 895662
[2026-02-02 06:00:05] 2026-02-02 10:59:24,613 | INFO     | pgrp: 895662
[2026-02-02 06:00:05] 2026-02-02 10:59:24,613 | INFO     | corecount: 10
[2026-02-02 06:00:05] 2026-02-02 10:59:24,613 | INFO     | event service: False
[2026-02-02 06:00:05] 2026-02-02 10:59:24,613 | INFO     | sizes: {0: 2277881, 1: 2278342, 11: 2278342, 5659: 2304986, 5661: 2314040, 5664: 2314178}
[2026-02-02 06:00:05] 2026-02-02 10:59:24,613 | INFO     | --------------------------------------------------
[2026-02-02 06:00:05] 2026-02-02 10:59:24,613 | INFO     | 
[2026-02-02 06:00:05] 2026-02-02 10:59:24,613 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-02-02 06:00:05] 2026-02-02 10:59:24,633 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,633 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,633 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,633 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,633 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,633 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 06:00:05] 2026-02-02 10:59:24,634 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,635 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 06:00:05] 2026-02-02 10:59:24,635 | INFO     | job 6995620131 has completed (purged errors)
[2026-02-02 06:00:05] 2026-02-02 10:59:24,635 | INFO     | overall cleanup function is called
[2026-02-02 06:00:05] 2026-02-02 10:59:25,643 | INFO     | --- collectZombieJob: --- 10, [895662]
[2026-02-02 06:00:05] 2026-02-02 10:59:25,643 | INFO     | zombie collector waiting for pid 895662
[2026-02-02 06:00:05] 2026-02-02 10:59:25,643 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 06:00:05] 2026-02-02 10:59:25,643 | INFO     | collected zombie processes
[2026-02-02 06:00:05] 2026-02-02 10:59:25,643 | INFO     | will attempt to kill all subprocesses of pid=895662
[2026-02-02 06:00:05] 2026-02-02 10:59:26,325 | INFO     | process IDs to be killed: [895662] (in reverse order)
[2026-02-02 06:00:05] 2026-02-02 10:59:26,533 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 06:00:05] 2026-02-02 10:59:26,533 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 06:00:05] 2026-02-02 10:59:26,555 | INFO     | did not find any defunct processes belonging to 895662
[2026-02-02 06:00:05] 2026-02-02 10:59:26,575 | INFO     | did not find any defunct processes belonging to 895662
[2026-02-02 06:00:05] 2026-02-02 10:59:26,576 | INFO     | ready for new job
[2026-02-02 06:00:05] 2026-02-02 10:59:26,576 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 06:00:05] 2026-02-02 10:59:26,577 | INFO     | **************************************
[2026-02-02 06:00:05] 2026-02-02 10:59:26,578 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 06:00:05] 2026-02-02 10:59:26,578 | INFO     | **************************************
[2026-02-02 06:00:05] 2026-02-02 10:59:26,578 | INFO     | 
[2026-02-02 06:00:05] 2026-02-02 10:59:26,582 | INFO     | architecture information:
[2026-02-02 06:00:05] 2026-02-02 10:59:26,583 | INFO     | executing command: cat /etc/os-release
[2026-02-02 06:00:05] 2026-02-02 10:59:26,643 | INFO     | cat /etc/os-release:
[2026-02-02 06:00:05] NAME="CentOS Linux"
[2026-02-02 06:00:05] VERSION="7 (Core)"
[2026-02-02 06:00:05] ID="centos"
[2026-02-02 06:00:05] ID_LIKE="rhel fedora"
[2026-02-02 06:00:05] VERSION_ID="7"
[2026-02-02 06:00:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 06:00:05] ANSI_COLOR="0;31"
[2026-02-02 06:00:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 06:00:05] HOME_URL="https://www.centos.org/"
[2026-02-02 06:00:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 06:00:05] 
[2026-02-02 06:00:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 06:00:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 06:00:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 06:00:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 06:00:05] 
[2026-02-02 06:00:05] 2026-02-02 10:59:26,643 | INFO     | **************************************
[2026-02-02 06:00:05] 2026-02-02 10:59:27,154 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-02-02 06:00:05] 2026-02-02 10:59:27,201 | INFO     | sufficient remaining disk space (69583503360 B)
[2026-02-02 06:00:05] 2026-02-02 10:59:27,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 06:00:05] 2026-02-02 10:59:27,202 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 06:00:05] 2026-02-02 10:59:27,202 | INFO     | update_server=False
[2026-02-02 06:00:05] 2026-02-02 10:59:27,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 06:00:05] 2026-02-02 10:59:27,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 06:00:05] 2026-02-02 10:59:27,202 | INFO     | aborting loop
[2026-02-02 06:00:05] 2026-02-02 10:59:27,289 | INFO     | all payload control threads have been joined
[2026-02-02 06:00:05] 2026-02-02 10:59:27,846 | INFO     | all data control threads have been joined
[2026-02-02 06:00:05] 2026-02-02 10:59:27,986 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 06:00:05] 2026-02-02 10:59:28,207 | INFO     | [job] retrieve thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:28,207 | INFO     | [job] job monitor thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:28,240 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:28,295 | INFO     | [payload] control thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:28,336 | INFO     | [job] validate thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:28,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 06:00:05] 2026-02-02 10:59:28,603 | INFO     | [payload] failed_post thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:28,684 | INFO     | all job control threads have been joined
[2026-02-02 06:00:05] 2026-02-02 10:59:28,771 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:28,862 | INFO     | [data] control thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:28,901 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:28,948 | INFO     | [data] copytool_in thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:29,169 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:29,355 | INFO     | [payload] validate_post thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:29,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 06:00:05] 2026-02-02 10:59:29,691 | INFO     | [job] control thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:29,997 | INFO     | [data] copytool_out thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:30,631 | INFO     | [job] queue monitor thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:32,582 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 06:00:05] 2026-02-02 10:59:56,414 | INFO     | PID=890074 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-02 06:00:05] 2026-02-02 10:59:56,414 | INFO     | .. there are 31 such processes running
[2026-02-02 06:00:05] 2026-02-02 10:59:56,415 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 06:00:05] 2026-02-02 10:59:56,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 06:00:05] 2026-02-02 10:59:56,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 06:00:05] 2026-02-02 10:59:59,244 | INFO     | [monitor] cgroup control has ended
[2026-02-02 06:00:05] 2026-02-02 11:00:00,538 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140570112227136)>', '<ExcThread(monitor, started 140569154144000)>']
[2026-02-02 06:00:05] 2026-02-02 11:00:01,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 06:00:05] 2026-02-02 11:00:01,444 | INFO     | [monitor] control thread has ended
[2026-02-02 06:00:05] 2026-02-02 11:00:05,573 | INFO     | all workflow threads have been joined
[2026-02-02 06:00:05] 2026-02-02 11:00:05,573 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 06:00:05] 2026-02-02 11:00:05,573 | INFO     | traces error code: 0
[2026-02-02 06:00:05] 2026-02-02 11:00:05,573 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 06:00:05] 2026-02-02 11:00:05,696 [wrapper] ==== pilot stdout END ====
[2026-02-02 06:00:05] 2026-02-02 11:00:05,698 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 06:00:05] 2026-02-02 11:00:05,701 [wrapper] pilotpid: 890074
[2026-02-02 06:00:05] 2026-02-02 11:00:05,704 [wrapper] Pilot exit status: 0
[2026-02-02 06:00:05] 2026-02-02 11:00:05,715 [wrapper] pandaids: 6995620131
[2026-02-02 06:00:05] 2026-02-02 11:00:05,856 [wrapper] cleanup supervisor_pilot 1318897 890075
[2026-02-02 06:00:05] 2026-02-02 11:00:05,860 [wrapper] Test setup, not cleaning
[2026-02-02 06:00:05] 2026-02-02 11:00:05,863 [wrapper] apfmon messages muted
[2026-02-02 06:00:05] 2026-02-02 11:00:05,867 [wrapper] ==== wrapper stdout END ====
[2026-02-02 06:00:05] 2026-02-02 11:00:05,872 [wrapper] ==== wrapper stderr END ====
[2026-02-02 06:00:05]  *** Error codes and diagnostics ***
[2026-02-02 06:00:05]     "exeErrorCode": 0,
[2026-02-02 06:00:05]     "exeErrorDiag": "",
[2026-02-02 06:00:05]     "pilotErrorCode": 0,
[2026-02-02 06:00:05]     "pilotErrorDiag": "",
[2026-02-02 06:00:05]  *** Listing of results directory ***
[2026-02-02 06:00:05] total 895772
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas    584422 Feb  1 00:18 pilot3.tar.gz
[2026-02-02 06:00:05] -rwx------. 1 boincer umatlas     36322 Feb  1 00:22 runpilot2-wrapper.sh
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas      5111 Feb  1 00:22 queuedata.json
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas       100 Feb  2 04:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 06:00:05] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  2 04:24 run_atlas
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas       105 Feb  2 04:24 job.xml
[2026-02-02 06:00:05] -rw-r--r--. 2 boincer umatlas 653942076 Feb  2 04:24 EVNT.48431078._000097.pool.root.1
[2026-02-02 06:00:05] -rw-r--r--. 2 boincer umatlas     15845 Feb  2 04:24 start_atlas.sh
[2026-02-02 06:00:05] drwxrwx--x. 2 boincer umatlas      4096 Feb  2 04:24 shared
[2026-02-02 06:00:05] -rw-r--r--. 2 boincer umatlas    597769 Feb  2 04:24 input.tar.gz
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas         0 Feb  2 04:24 boinc_lockfile
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas      2557 Feb  2 04:24 pandaJob.out
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas        57 Feb  2 04:24 setup.sh.local
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas   1008375 Feb  2 04:24 agis_schedconf.cvmfs.json
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas   1511668 Feb  2 04:24 agis_ddmendpoints.agis.ALL.json
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas       428 Feb  2 04:24 workernode_map.json
[2026-02-02 06:00:05] drwx------. 5 boincer umatlas      4096 Feb  2 04:24 pilot3
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas      6945 Feb  2 05:56 init_data.xml
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas 257068190 Feb  2 05:58 HITS.48431080._004979.pool.root.1
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas       530 Feb  2 05:58 boinc_task_state.xml
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas      1030 Feb  2 05:59 memory_monitor_summary.json
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas    367688 Feb  2 05:59 log.48431080._004979.job.log.tgz.1
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas        95 Feb  2 05:59 pilot_heartbeat.json
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas      6324 Feb  2 05:59 heartbeat.json
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas      8192 Feb  2 06:00 boinc_mmap_file
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas        27 Feb  2 06:00 wrapper_checkpoint.txt
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas      4819 Feb  2 06:00 pilotlog.txt
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas    788028 Feb  2 06:00 log.48431080._004979.job.log.1
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas       357 Feb  2 06:00 output.list
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas       620 Feb  2 06:00 runtime_log
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas   1177600 Feb  2 06:00 result.tar.gz
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas       651 Feb  2 06:00 tLwMDmx5e68n9Rq4apOajLDm4fhM0noT9bVooX4SDmEGPKDmU7G5Ro.diag
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas      9338 Feb  2 06:00 runtime_log.err
[2026-02-02 06:00:05] -rw-r--r--. 1 boincer umatlas     21325 Feb  2 06:00 stderr.txt
[2026-02-02 06:00:05] HITS file was successfully produced:
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas 257068190 Feb  2 05:58 shared/HITS.pool.root.1
[2026-02-02 06:00:05]  *** Contents of shared directory: ***
[2026-02-02 06:00:05] total 891420
[2026-02-02 06:00:05] -rw-r--r--. 2 boincer umatlas 653942076 Feb  2 04:24 ATLAS.root_0
[2026-02-02 06:00:05] -rw-r--r--. 2 boincer umatlas     15845 Feb  2 04:24 start_atlas.sh
[2026-02-02 06:00:05] -rw-r--r--. 2 boincer umatlas    597769 Feb  2 04:24 input.tar.gz
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas 257068190 Feb  2 05:58 HITS.pool.root.1
[2026-02-02 06:00:05] -rw-------. 1 boincer umatlas   1177600 Feb  2 06:00 result.tar.gz
06:00:07 (885581): run_atlas exited; CPU time 42886.873915
06:00:07 (885581): called boinc_finish(0)

</stderr_txt>
]]>

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