Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:19:53 (825386): wrapper (7.7.26015): starting
20:19:53 (825386): wrapper: running run_atlas (--nthreads 4)
[2026-02-02 20:19:53] Arguments: --nthreads 4
[2026-02-02 20:19:53] Threads: 4
[2026-02-02 20:19:53] Checking for CVMFS
[2026-02-02 20:19:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 20:19:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 20:19:54] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 20:19:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 20:19:54] 2.9.2.0 3018 4776 93776 155802 2 49 23985087 36864001 0 130560 0 2310171 99.986 170861 12780 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 20:19:54] CVMFS is ok
[2026-02-02 20:19:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 20:19:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 20:19:54] Further information can be found at the LHC@home message board.
[2026-02-02 20:19:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 20:19:54] Checking for apptainer binary...
[2026-02-02 20:19:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 20:19:54] Running /usr/bin/apptainer --version
[2026-02-02 20:19:54] apptainer version 1.4.1-1.1
[2026-02-02 20:19:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 20:19:54] thA334
[2026-02-02 20:19:54] apptainer works
[2026-02-02 20:19:54] Set ATHENA_PROC_NUMBER=4
[2026-02-02 20:19:54] Set ATHENA_CORE_NUMBER=4
[2026-02-02 20:19:54] Starting ATLAS job with PandaID=6996522402
[2026-02-02 20:19:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 21:59:29]  *** The last 200 lines of the pilot log: ***
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 21:59:29] 2026-02-02 20:58:56,970 | INFO     | job 6996522402 has completed (purged errors)
[2026-02-02 21:59:29] 2026-02-02 20:58:56,971 | INFO     | overall cleanup function is called
[2026-02-02 21:59:29] 2026-02-02 20:58:57,977 | INFO     | --- collectZombieJob: --- 10, [834007]
[2026-02-02 21:59:29] 2026-02-02 20:58:57,978 | INFO     | zombie collector waiting for pid 834007
[2026-02-02 21:59:29] 2026-02-02 20:58:57,978 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 21:59:29] 2026-02-02 20:58:57,978 | INFO     | collected zombie processes
[2026-02-02 21:59:29] 2026-02-02 20:58:57,978 | INFO     | will attempt to kill all subprocesses of pid=834007
[2026-02-02 21:59:29] 2026-02-02 20:58:58,019 | INFO     | process IDs to be killed: [834007] (in reverse order)
[2026-02-02 21:59:29] 2026-02-02 20:58:58,050 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 21:59:29] 2026-02-02 20:58:58,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 21:59:29] 2026-02-02 20:58:58,052 | INFO     | did not find any defunct processes belonging to 834007
[2026-02-02 21:59:29] 2026-02-02 20:58:58,053 | INFO     | did not find any defunct processes belonging to 834007
[2026-02-02 21:59:29] 2026-02-02 20:58:58,053 | INFO     | ready for new job
[2026-02-02 21:59:29] 2026-02-02 20:58:58,053 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 21:59:29] 2026-02-02 20:58:58,054 | INFO     | **************************************
[2026-02-02 21:59:29] 2026-02-02 20:58:58,054 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 21:59:29] 2026-02-02 20:58:58,054 | INFO     | **************************************
[2026-02-02 21:59:29] 2026-02-02 20:58:58,054 | INFO     | 
[2026-02-02 21:59:29] 2026-02-02 20:58:58,054 | INFO     | architecture information:
[2026-02-02 21:59:29] 2026-02-02 20:58:58,055 | INFO     | executing command: cat /etc/os-release
[2026-02-02 21:59:29] 2026-02-02 20:58:58,067 | INFO     | cat /etc/os-release:
[2026-02-02 21:59:29] NAME="CentOS Linux"
[2026-02-02 21:59:29] VERSION="7 (Core)"
[2026-02-02 21:59:29] ID="centos"
[2026-02-02 21:59:29] ID_LIKE="rhel fedora"
[2026-02-02 21:59:29] VERSION_ID="7"
[2026-02-02 21:59:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 21:59:29] ANSI_COLOR="0;31"
[2026-02-02 21:59:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 21:59:29] HOME_URL="https://www.centos.org/"
[2026-02-02 21:59:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 21:59:29] 
[2026-02-02 21:59:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 21:59:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 21:59:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 21:59:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 21:59:29] 
[2026-02-02 21:59:29] 2026-02-02 20:58:58,068 | INFO     | **************************************
[2026-02-02 21:59:29] 2026-02-02 20:58:58,571 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 21:59:29] 2026-02-02 20:58:58,589 | INFO     | sufficient remaining disk space (231973322752 B)
[2026-02-02 21:59:29] 2026-02-02 20:58:58,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 21:59:29] 2026-02-02 20:58:58,590 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 21:59:29] 2026-02-02 20:58:58,590 | INFO     | update_server=False
[2026-02-02 21:59:29] 2026-02-02 20:58:58,590 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 21:59:29] 2026-02-02 20:58:58,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 21:59:29] 2026-02-02 20:58:58,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 21:59:29] 2026-02-02 20:58:58,590 | INFO     | aborting loop
[2026-02-02 21:59:29] 2026-02-02 20:58:58,661 | INFO     | all payload control threads have been joined
[2026-02-02 21:59:29] 2026-02-02 20:58:58,928 | INFO     | all job control threads have been joined
[2026-02-02 21:59:29] 2026-02-02 20:58:59,297 | INFO     | all data control threads have been joined
[2026-02-02 21:59:29] 2026-02-02 20:58:59,595 | INFO     | [job] retrieve thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:58:59,595 | INFO     | [job] queue monitor thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:58:59,595 | INFO     | [job] job monitor thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:58:59,667 | INFO     | [payload] control thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:58:59,934 | INFO     | [job] control thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:00,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 21:59:29] 2026-02-02 20:59:00,187 | INFO     | [job] validate thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:00,285 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:00,303 | INFO     | [data] control thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:00,413 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:00,465 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:00,601 | INFO     | [data] copytool_in thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:00,639 | INFO     | [payload] failed_post thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:00,657 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 21:59:29] 2026-02-02 20:59:01,194 | INFO     | [payload] validate_post thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:02,093 | INFO     | [data] copytool_out thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:04,665 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:08,728 | INFO     | job.realtimelogging is not enabled
[2026-02-02 21:59:29] 2026-02-02 20:59:09,734 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 21:59:29] 2026-02-02 20:59:13,157 | INFO     | [monitor] cgroup control has ended
[2026-02-02 21:59:29] 2026-02-02 20:59:13,840 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140058473981760)>', '<ExcThread(monitor, started 140057977534208)>']
[2026-02-02 21:59:29] 2026-02-02 20:59:18,865 | INFO     | all workflow threads have been joined
[2026-02-02 21:59:29] 2026-02-02 20:59:18,866 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 21:59:29] 2026-02-02 20:59:18,867 | INFO     | traces error code: 0
[2026-02-02 21:59:29] 2026-02-02 20:59:18,867 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 21:59:29] 2026-02-02 20:59:29,155 | INFO     | PID=829498 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-02 21:59:29] 2026-02-02 20:59:29,155 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 21:59:29] 2026-02-02 20:59:29,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 21:59:29] 2026-02-02 20:59:29,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 21:59:29] 2026-02-02 20:59:29,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 21:59:29] 2026-02-02 20:59:29,155 | INFO     | [monitor] control thread has ended
[2026-02-02 21:59:29] 2026-02-02 20:59:29,220 [wrapper] ==== pilot stdout END ====
[2026-02-02 21:59:29] 2026-02-02 20:59:29,224 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 21:59:29] 2026-02-02 20:59:29,227 [wrapper] pilotpid: 829498
[2026-02-02 21:59:29] 2026-02-02 20:59:29,231 [wrapper] Pilot exit status: 0
[2026-02-02 21:59:29] 2026-02-02 20:59:29,241 [wrapper] pandaids: 6996522402
[2026-02-02 21:59:29] 2026-02-02 20:59:29,262 [wrapper] cleanup supervisor_pilot  839612 829499
[2026-02-02 21:59:29] 2026-02-02 20:59:29,266 [wrapper] Test setup, not cleaning
[2026-02-02 21:59:29] 2026-02-02 20:59:29,269 [wrapper] apfmon messages muted
[2026-02-02 21:59:29] 2026-02-02 20:59:29,273 [wrapper] ==== wrapper stdout END ====
[2026-02-02 21:59:29] 2026-02-02 20:59:29,277 [wrapper] ==== wrapper stderr END ====
[2026-02-02 21:59:29]  *** Error codes and diagnostics ***
[2026-02-02 21:59:29]     "exeErrorCode": 0,
[2026-02-02 21:59:29]     "exeErrorDiag": "",
[2026-02-02 21:59:29]     "pilotErrorCode": 0,
[2026-02-02 21:59:29]     "pilotErrorDiag": "",
[2026-02-02 21:59:29]  *** Listing of results directory ***
[2026-02-02 21:59:29] total 907864
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc    584422 Feb  2 04:02 pilot3.tar.gz
[2026-02-02 21:59:29] -rwx------ 1 boinc boinc     36322 Feb  2 04:06 runpilot2-wrapper.sh
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc      5111 Feb  2 04:08 queuedata.json
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc       100 Feb  2 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 21:59:29] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 20:19 run_atlas
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc       105 Feb  2 20:19 job.xml
[2026-02-02 21:59:29] -rw-r--r-- 2 boinc boinc 658481010 Feb  2 20:19 EVNT.48431078._000124.pool.root.1
[2026-02-02 21:59:29] -rw-r--r-- 2 boinc boinc    597770 Feb  2 20:19 input.tar.gz
[2026-02-02 21:59:29] -rw-r--r-- 2 boinc boinc     15845 Feb  2 20:19 start_atlas.sh
[2026-02-02 21:59:29] drwxrwx--x 2 boinc boinc      4096 Feb  2 20:19 shared
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc         0 Feb  2 20:19 boinc_setup_complete
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc      6369 Feb  2 20:19 init_data.xml
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc         0 Feb  2 20:19 boinc_lockfile
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc      2559 Feb  2 20:19 pandaJob.out
[2026-02-02 21:59:29] -rw------- 1 boinc boinc   1009324 Feb  2 20:20 agis_schedconf.cvmfs.json
[2026-02-02 21:59:29] -rw------- 1 boinc boinc   1511668 Feb  2 20:20 agis_ddmendpoints.agis.ALL.json
[2026-02-02 21:59:29] -rw------- 1 boinc boinc       427 Feb  2 20:20 workernode_map.json
[2026-02-02 21:59:29] drwx------ 5 boinc boinc      4096 Feb  2 20:20 pilot3
[2026-02-02 21:59:29] -rw------- 1 boinc boinc 264881819 Feb  2 21:58 HITS.48431080._006480.pool.root.1
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc       530 Feb  2 21:58 boinc_task_state.xml
[2026-02-02 21:59:29] -rw------- 1 boinc boinc        95 Feb  2 21:58 pilot_heartbeat.json
[2026-02-02 21:59:29] -rw------- 1 boinc boinc      1019 Feb  2 21:58 memory_monitor_summary.json
[2026-02-02 21:59:29] -rw------- 1 boinc boinc    325783 Feb  2 21:58 log.48431080._006480.job.log.tgz.1
[2026-02-02 21:59:29] -rw------- 1 boinc boinc      6327 Feb  2 21:58 heartbeat.json
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc        27 Feb  2 21:59 wrapper_checkpoint.txt
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc      8192 Feb  2 21:59 boinc_mmap_file
[2026-02-02 21:59:29] -rw------- 1 boinc boinc       746 Feb  2 21:59 pilotlog.txt
[2026-02-02 21:59:29] -rw------- 1 boinc boinc    859120 Feb  2 21:59 log.48431080._006480.job.log.1
[2026-02-02 21:59:29] -rw------- 1 boinc boinc       357 Feb  2 21:59 output.list
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc       620 Feb  2 21:59 runtime_log
[2026-02-02 21:59:29] -rw------- 1 boinc boinc   1198080 Feb  2 21:59 result.tar.gz
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc      8896 Feb  2 21:59 runtime_log.err
[2026-02-02 21:59:29] -rw------- 1 boinc boinc       657 Feb  2 21:59 ZCkMDmPRz68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmjqRKDmZcpIMn.diag
[2026-02-02 21:59:29] -rw-r--r-- 1 boinc boinc     11907 Feb  2 21:59 stderr.txt
[2026-02-02 21:59:29] HITS file was successfully produced:
[2026-02-02 21:59:29] -rw------- 1 boinc boinc 264881819 Feb  2 21:58 shared/HITS.pool.root.1
[2026-02-02 21:59:29]  *** Contents of shared directory: ***
[2026-02-02 21:59:29] total 903504
[2026-02-02 21:59:29] -rw-r--r-- 2 boinc boinc 658481010 Feb  2 20:19 ATLAS.root_0
[2026-02-02 21:59:29] -rw-r--r-- 2 boinc boinc    597770 Feb  2 20:19 input.tar.gz
[2026-02-02 21:59:29] -rw-r--r-- 2 boinc boinc     15845 Feb  2 20:19 start_atlas.sh
[2026-02-02 21:59:29] -rw------- 1 boinc boinc 264881819 Feb  2 21:58 HITS.pool.root.1
[2026-02-02 21:59:29] -rw------- 1 boinc boinc   1198080 Feb  2 21:59 result.tar.gz
21:59:30 (825386): run_atlas exited; CPU time 22638.062301
21:59:30 (825386): called boinc_finish(0)

</stderr_txt>
]]>

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