Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:14:38 (1852714): wrapper (7.7.26015): starting
06:14:38 (1852714): wrapper: running run_atlas (--nthreads 4)
[2026-02-03 06:14:38] Arguments: --nthreads 4
[2026-02-03 06:14:38] Threads: 4
[2026-02-03 06:14:38] Checking for CVMFS
[2026-02-03 06:14:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 06:14:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 06:14:38] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 06:14:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 06:14:38] 2.9.2.0 860379 5287 95136 155819 3 9 25077448 36864001 0 130560 0 2665770 99.986 194270 14762 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-03 06:14:38] CVMFS is ok
[2026-02-03 06:14:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 06:14:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 06:14:38] Further information can be found at the LHC@home message board.
[2026-02-03 06:14:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 06:14:38] Checking for apptainer binary...
[2026-02-03 06:14:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 06:14:38] Running /usr/bin/apptainer --version
[2026-02-03 06:14:38] apptainer version 1.4.1-1.1
[2026-02-03 06:14:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 06:14:38] atlasA139
[2026-02-03 06:14:38] apptainer works
[2026-02-03 06:14:38] Set ATHENA_PROC_NUMBER=4
[2026-02-03 06:14:38] Set ATHENA_CORE_NUMBER=4
[2026-02-03 06:14:38] Starting ATLAS job with PandaID=6996648862
[2026-02-03 06:14:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 07:32:15]  *** The last 200 lines of the pilot log: ***
[2026-02-03 07:32:15]  guid=498fdf1f-2d7d-4dfb-ae80-625051dafdbb
[2026-02-03 07:32:15]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-03 07:32:15]  is_altstaged=None
[2026-02-03 07:32:15]  is_tar=False
[2026-02-03 07:32:15]  lfn=log.48317892._009114.job.log.tgz.1
[2026-02-03 07:32:15]  mtime=0
[2026-02-03 07:32:15]  protocol_id=None
[2026-02-03 07:32:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-03 07:32:15]  replicas=None
[2026-02-03 07:32:15]  scope=mc23_13p6TeV
[2026-02-03 07:32:15]  status=None
[2026-02-03 07:32:15]  status_code=0
[2026-02-03 07:32:15]  storage_token=
[2026-02-03 07:32:15]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6996648862/log.48317892._009114.job.log.tgz.1
[2026-02-03 07:32:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/5c/log.48317892._009114.job.log.tgz.1
[2026-02-03 07:32:15]  workdir=None
[2026-02-03 07:32:15] ]
[2026-02-03 07:32:15] 2026-02-03 06:31:40,529 | INFO     | transferring file log.48317892._009114.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6996648862/log.48317892._009114.job.log.tgz.1 to /local/data/boinc/
[2026-02-03 07:32:15] 2026-02-03 06:31:40,529 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6996648862/log.48317892._009114.job.log.tgz.1 /local/data/boinc/slots/0/log.48317892._0091
[2026-02-03 07:32:15] 2026-02-03 06:31:40,547 | INFO     | adding to output.list: log.48317892._009114.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/5c/log.48317892._009114.job.log.tg
[2026-02-03 07:32:15] 2026-02-03 06:31:40,548 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-03 07:32:15] 2026-02-03 06:31:40,548 | INFO     | summary of transferred files:
[2026-02-03 07:32:15] 2026-02-03 06:31:40,548 | INFO     |  -- lfn=log.48317892._009114.job.log.tgz.1, status_code=0, status=transferred
[2026-02-03 07:32:15] 2026-02-03 06:31:40,548 | INFO     | stage-out finished correctly
[2026-02-03 07:32:15] 2026-02-03 06:31:40,586 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-03 07:32:15] 2026-02-03 06:31:41,739 | INFO     | time since job start (4610s) is within the limit (349056.0s)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,460 | INFO     | job 6996648862 has state=finished
[2026-02-03 07:32:15] 2026-02-03 06:31:43,460 | INFO     | preparing for final server update for job 6996648862 in state='finished'
[2026-02-03 07:32:15] 2026-02-03 06:31:43,460 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-6996648862/jobReport.json
[2026-02-03 07:32:15] 2026-02-03 06:31:43,462 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-02-03 07:32:15] 2026-02-03 06:31:43,462 | INFO     | this job has now completed (state=finished)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,462 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,462 | INFO     | log transfer has been attempted: DONE
[2026-02-03 07:32:15] 2026-02-03 06:31:43,462 | INFO     | job 6996648862 has finished - writing final server update
[2026-02-03 07:32:15] 2026-02-03 06:31:43,462 | INFO     | total number of processed events: 400 (read)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,464 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6996648862/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,464 | INFO     | extracted standard info from prmon json
[2026-02-03 07:32:15] 2026-02-03 06:31:43,464 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 07:32:15] 2026-02-03 06:31:43,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 07:32:15] 2026-02-03 06:31:43,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 07:32:15] 2026-02-03 06:31:43,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 07:32:15] 2026-02-03 06:31:43,465 | INFO     | fitting pss+swap vs Time
[2026-02-03 07:32:15] 2026-02-03 06:31:43,465 | INFO     | sum of square deviations: 101843770.0
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | sum of deviations: -9536127438.000002
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | mean x: 1770098089.0
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | mean y: 2709133.3333333335
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | intersect: 165745600961.31918
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | chi2: 0.1547565553551768
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | current memory leak: -93.63 B/s (using 69 data points, chi2=0.15)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | could have reported an average CPU frequency of 3504 MHz (6 samples)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | ..............................
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | . Timing measurements:
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | . get job = 0 s
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | . initial setup = 4 s
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | . payload setup = 4 s
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | . stage-in = 0 s
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | . payload execution = 4590 s
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | . stage-out = 0 s
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | . log creation = 0 s
[2026-02-03 07:32:15] 2026-02-03 06:31:43,466 | INFO     | ..............................
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | 
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | job summary report
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | --------------------------------------------------
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | PanDA job id: 6996648862
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | task id: 48317892
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | errors: (none)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | pilot state: finished 
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | transexitcode: 0
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | exeerrorcode: 0
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | exeerrordiag: 
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | exitcode: 0
[2026-02-03 07:32:15] 2026-02-03 06:31:43,505 | INFO     | exitmsg: OK
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | cpuconsumptiontime: 17350 s
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | nevents: 400
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | neventsw: 0
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | pid: 1861367
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | pgrp: 1861367
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | corecount: 4
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | event service: False
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | sizes: {0: 2278224, 11: 2278224, 4598: 2313524, 4601: 2313662}
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | --------------------------------------------------
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | 
[2026-02-03 07:32:15] 2026-02-03 06:31:43,506 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,526 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,526 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,526 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 07:32:15] 2026-02-03 06:31:43,526 | INFO     | job 6996648862 has completed (purged errors)
[2026-02-03 07:32:15] 2026-02-03 06:31:43,526 | INFO     | overall cleanup function is called
[2026-02-03 07:32:15] 2026-02-03 06:31:44,394 | WARNING  | process 1861367 can no longer be monitored (due to stat problems) - aborting
[2026-02-03 07:32:15] 2026-02-03 06:31:44,433 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 07:32:15] 2026-02-03 06:31:44,480 | INFO     | number of running child processes to parent process 1861367: 1
[2026-02-03 07:32:15] 2026-02-03 06:31:44,480 | INFO     | maximum number of monitored processes: 6
[2026-02-03 07:32:15] 2026-02-03 06:31:44,480 | INFO     | aborting job monitoring since job object (job id=6996648862) has expired
[2026-02-03 07:32:15] 2026-02-03 06:31:44,532 | INFO     | --- collectZombieJob: --- 10, [1861367]
[2026-02-03 07:32:15] 2026-02-03 06:31:44,532 | INFO     | zombie collector waiting for pid 1861367
[2026-02-03 07:32:15] 2026-02-03 06:31:44,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 07:32:15] 2026-02-03 06:31:44,532 | INFO     | collected zombie processes
[2026-02-03 07:32:15] 2026-02-03 06:31:44,533 | INFO     | will attempt to kill all subprocesses of pid=1861367
[2026-02-03 07:32:15] 2026-02-03 06:31:44,581 | INFO     | process IDs to be killed: [1861367] (in reverse order)
[2026-02-03 07:32:15] 2026-02-03 06:31:44,616 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 07:32:15] 2026-02-03 06:31:44,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 07:32:15] 2026-02-03 06:31:44,618 | INFO     | did not find any defunct processes belonging to 1861367
[2026-02-03 07:32:15] 2026-02-03 06:31:44,620 | INFO     | did not find any defunct processes belonging to 1861367
[2026-02-03 07:32:15] 2026-02-03 06:31:44,620 | INFO     | ready for new job
[2026-02-03 07:32:15] 2026-02-03 06:31:44,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 07:32:15] 2026-02-03 06:31:44,620 | INFO     | **************************************
[2026-02-03 07:32:15] 2026-02-03 06:31:44,621 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 07:32:15] 2026-02-03 06:31:44,621 | INFO     | **************************************
[2026-02-03 07:32:15] 2026-02-03 06:31:44,621 | INFO     | 
[2026-02-03 07:32:15] 2026-02-03 06:31:44,621 | INFO     | architecture information:
[2026-02-03 07:32:15] 2026-02-03 06:31:44,621 | INFO     | executing command: cat /etc/os-release
[2026-02-03 07:32:15] 2026-02-03 06:31:44,635 | INFO     | cat /etc/os-release:
[2026-02-03 07:32:15] NAME="CentOS Linux"
[2026-02-03 07:32:15] VERSION="7 (Core)"
[2026-02-03 07:32:15] ID="centos"
[2026-02-03 07:32:15] ID_LIKE="rhel fedora"
[2026-02-03 07:32:15] VERSION_ID="7"
[2026-02-03 07:32:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 07:32:15] ANSI_COLOR="0;31"
[2026-02-03 07:32:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 07:32:15] HOME_URL="https://www.centos.org/"
[2026-02-03 07:32:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 07:32:15] 
[2026-02-03 07:32:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 07:32:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 07:32:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 07:32:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 07:32:15] 
[2026-02-03 07:32:15] 2026-02-03 06:31:44,635 | INFO     | **************************************
[2026-02-03 07:32:15] 2026-02-03 06:31:45,139 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-03 07:32:15] 2026-02-03 06:31:45,155 | INFO     | sufficient remaining disk space (328483209216 B)
[2026-02-03 07:32:15] 2026-02-03 06:31:45,155 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 07:32:15] 2026-02-03 06:31:45,155 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 07:32:15] 2026-02-03 06:31:45,155 | INFO     | update_server=False
[2026-02-03 07:32:15] 2026-02-03 06:31:45,155 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 07:32:15] 2026-02-03 06:31:45,155 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 07:32:15] 2026-02-03 06:31:45,155 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 07:32:15] 2026-02-03 06:31:45,155 | INFO     | will abort loop
[2026-02-03 07:32:15] 2026-02-03 06:31:45,434 | INFO     | all data control threads have been joined
[2026-02-03 07:32:15] 2026-02-03 06:31:46,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 07:32:15] 2026-02-03 06:31:46,161 | INFO     | [job] retrieve thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:46,161 | INFO     | [job] queue monitor thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:46,161 | INFO     | [job] job monitor thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:46,335 | INFO     | all payload control threads have been joined
[2026-02-03 07:32:15] 2026-02-03 06:31:46,439 | INFO     | [data] control thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:46,630 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 07:32:15] 2026-02-03 06:31:46,637 | INFO     | all job control threads have been joined
[2026-02-03 07:32:15] 2026-02-03 06:31:46,779 | INFO     | [job] validate thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:46,828 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:46,966 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:47,055 | INFO     | [payload] failed_post thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:47,071 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:47,097 | INFO     | [data] copytool_in thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:47,340 | INFO     | [payload] control thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:47,598 | INFO     | [payload] validate_post thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:47,643 | INFO     | [job] control thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:48,102 | INFO     | [data] copytool_out thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:50,637 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:55,039 | INFO     | [monitor] cgroup control has ended
[2026-02-03 07:32:15] 2026-02-03 06:31:56,023 | INFO     | job.realtimelogging is not enabled
[2026-02-03 07:32:15] 2026-02-03 06:31:57,029 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 07:32:15] 2026-02-03 06:31:57,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139656900446016)>', '<ExcThread(monitor, started 139656247088896)>']
[2026-02-03 07:32:15] 2026-02-03 06:32:02,419 | INFO     | all workflow threads have been joined
[2026-02-03 07:32:15] 2026-02-03 06:32:02,419 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 07:32:15] 2026-02-03 06:32:02,419 | INFO     | traces error code: 0
[2026-02-03 07:32:15] 2026-02-03 06:32:02,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 07:32:15] 2026-02-03 06:32:14,864 | INFO     | PID=1856838 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 07:32:15] 2026-02-03 06:32:14,865 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 07:32:15] 2026-02-03 06:32:14,865 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 07:32:15] 2026-02-03 06:32:14,865 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 07:32:15] 2026-02-03 06:32:14,865 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 07:32:15] 2026-02-03 06:32:14,865 | INFO     | [monitor] control thread has ended
[2026-02-03 07:32:15] 2026-02-03 06:32:14,937 [wrapper] ==== pilot stdout END ====
[2026-02-03 07:32:15] 2026-02-03 06:32:14,941 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 07:32:15] 2026-02-03 06:32:14,945 [wrapper] pilotpid: 1856838
[2026-02-03 07:32:15] 2026-02-03 06:32:14,948 [wrapper] Pilot exit status: 0
[2026-02-03 07:32:15] 2026-02-03 06:32:14,959 [wrapper] pandaids: 6996648862
[2026-02-03 07:32:15] 2026-02-03 06:32:14,981 [wrapper] cleanup supervisor_pilot 1867110 1856839
[2026-02-03 07:32:15] 2026-02-03 06:32:14,985 [wrapper] Test setup, not cleaning
[2026-02-03 07:32:15] 2026-02-03 06:32:14,989 [wrapper] apfmon messages muted
[2026-02-03 07:32:15] 2026-02-03 06:32:14,992 [wrapper] ==== wrapper stdout END ====
[2026-02-03 07:32:15] 2026-02-03 06:32:14,996 [wrapper] ==== wrapper stderr END ====
[2026-02-03 07:32:15]  *** Error codes and diagnostics ***
[2026-02-03 07:32:15]     "exeErrorCode": 0,
[2026-02-03 07:32:15]     "exeErrorDiag": "",
[2026-02-03 07:32:15]     "pilotErrorCode": 0,
[2026-02-03 07:32:15]     "pilotErrorDiag": "",
[2026-02-03 07:32:15]  *** Listing of results directory ***
[2026-02-03 07:32:15] total 670076
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc      5111 Feb  2 08:08 queuedata.json
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc    584422 Feb  2 08:08 pilot3.tar.gz
[2026-02-03 07:32:15] -rwx------ 1 boinc boinc     36322 Feb  2 08:08 runpilot2-wrapper.sh
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc       100 Feb  3 06:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 07:32:15] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 06:14 run_atlas
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc       105 Feb  3 06:14 job.xml
[2026-02-03 07:32:15] -rw-r--r-- 2 boinc boinc 494560216 Feb  3 06:14 EVNT.48317889._000174.pool.root.1
[2026-02-03 07:32:15] -rw-r--r-- 2 boinc boinc    597753 Feb  3 06:14 input.tar.gz
[2026-02-03 07:32:15] -rw-r--r-- 2 boinc boinc     15845 Feb  3 06:14 start_atlas.sh
[2026-02-03 07:32:15] drwxrwx--x 2 boinc boinc      4096 Feb  3 06:14 shared
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc         0 Feb  3 06:14 boinc_setup_complete
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc      6372 Feb  3 06:14 init_data.xml
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc         0 Feb  3 06:14 boinc_lockfile
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc      2521 Feb  3 06:14 pandaJob.out
[2026-02-03 07:32:15] -rw------- 1 boinc boinc   1009324 Feb  3 06:14 agis_schedconf.cvmfs.json
[2026-02-03 07:32:15] -rw------- 1 boinc boinc   1511668 Feb  3 06:14 agis_ddmendpoints.agis.ALL.json
[2026-02-03 07:32:15] -rw------- 1 boinc boinc       423 Feb  3 06:14 workernode_map.json
[2026-02-03 07:32:15] drwx------ 5 boinc boinc      4096 Feb  3 06:14 pilot3
[2026-02-03 07:32:15] -rw------- 1 boinc boinc 185704052 Feb  3 07:31 HITS.48317892._009114.pool.root.1
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc       530 Feb  3 07:31 boinc_task_state.xml
[2026-02-03 07:32:15] -rw------- 1 boinc boinc      1020 Feb  3 07:31 memory_monitor_summary.json
[2026-02-03 07:32:15] -rw------- 1 boinc boinc    299619 Feb  3 07:31 log.48317892._009114.job.log.tgz.1
[2026-02-03 07:32:15] -rw------- 1 boinc boinc      6318 Feb  3 07:31 heartbeat.json
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc        27 Feb  3 07:32 wrapper_checkpoint.txt
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc      8192 Feb  3 07:32 boinc_mmap_file
[2026-02-03 07:32:15] -rw------- 1 boinc boinc       747 Feb  3 07:32 pilotlog.txt
[2026-02-03 07:32:15] -rw------- 1 boinc boinc        95 Feb  3 07:32 pilot_heartbeat.json
[2026-02-03 07:32:15] -rw------- 1 boinc boinc    679646 Feb  3 07:32 log.48317892._009114.job.log.1
[2026-02-03 07:32:15] -rw------- 1 boinc boinc       357 Feb  3 07:32 output.list
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc       620 Feb  3 07:32 runtime_log
[2026-02-03 07:32:15] -rw------- 1 boinc boinc    993280 Feb  3 07:32 result.tar.gz
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc      8911 Feb  3 07:32 runtime_log.err
[2026-02-03 07:32:15] -rw------- 1 boinc boinc       660 Feb  3 07:32 UTvNDmHE368n9Rq4apOajLDm4fhM0noT9bVooX4SDmsuRKDmSYoCkn.diag
[2026-02-03 07:32:15] -rw-r--r-- 1 boinc boinc     21356 Feb  3 07:32 stderr.txt
[2026-02-03 07:32:15] HITS file was successfully produced:
[2026-02-03 07:32:15] -rw------- 1 boinc boinc 185704052 Feb  3 07:31 shared/HITS.pool.root.1
[2026-02-03 07:32:15]  *** Contents of shared directory: ***
[2026-02-03 07:32:15] total 665904
[2026-02-03 07:32:15] -rw-r--r-- 2 boinc boinc 494560216 Feb  3 06:14 ATLAS.root_0
[2026-02-03 07:32:15] -rw-r--r-- 2 boinc boinc    597753 Feb  3 06:14 input.tar.gz
[2026-02-03 07:32:15] -rw-r--r-- 2 boinc boinc     15845 Feb  3 06:14 start_atlas.sh
[2026-02-03 07:32:15] -rw------- 1 boinc boinc 185704052 Feb  3 07:31 HITS.pool.root.1
[2026-02-03 07:32:15] -rw------- 1 boinc boinc    993280 Feb  3 07:32 result.tar.gz
07:32:16 (1852714): run_atlas exited; CPU time 17374.166159
07:32:16 (1852714): called boinc_finish(0)

</stderr_txt>
]]>

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