Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:12:47 (1990517): wrapper (7.7.26015): starting
06:12:47 (1990517): wrapper: running run_atlas (--nthreads 3)
[2026-02-03 06:12:47] Arguments: --nthreads 3
[2026-02-03 06:12:47] Threads: 3
[2026-02-03 06:12:47] Checking for CVMFS
[2026-02-03 06:12:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 06:13:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 06:13:07] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 06:13:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 06:13:07] 2.13.3.0 1976961 128 49124 155805 1 50 16208435 31457281 0 130560 0 45837 99.956 9555 29 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-02-03 06:13:07] CVMFS is ok
[2026-02-03 06:13:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 06:13:07] Checking for apptainer binary...
[2026-02-03 06:13:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 06:13:07] Running /usr/bin/apptainer --version
[2026-02-03 06:13:07] apptainer version 1.4.5-2.el9
[2026-02-03 06:13:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 06:13:08] testio001
[2026-02-03 06:13:08] apptainer works
[2026-02-03 06:13:08] Set ATHENA_PROC_NUMBER=3
[2026-02-03 06:13:08] Set ATHENA_CORE_NUMBER=3
[2026-02-03 06:13:08] Starting ATLAS job with PandaID=6996582921
[2026-02-03 06:13:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 08:25:41]  *** The last 200 lines of the pilot log: ***
[2026-02-03 08:25:41] 2026-02-02 23:25:00,432 | INFO     | log transfer has been attempted: DONE
[2026-02-03 08:25:41] 2026-02-02 23:25:00,432 | INFO     | job 6996582921 has finished - writing final server update
[2026-02-03 08:25:41] 2026-02-02 23:25:00,432 | INFO     | total number of processed events: 400 (read)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,433 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6996582921/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,433 | INFO     | extracted standard info from prmon json
[2026-02-03 08:25:41] 2026-02-02 23:25:00,433 | INFO     | extracted standard memory fields from prmon json
[2026-02-03 08:25:41] 2026-02-02 23:25:00,433 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-03 08:25:41] 2026-02-02 23:25:00,433 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-03 08:25:41] 2026-02-02 23:25:00,433 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-03 08:25:41] 2026-02-02 23:25:00,434 | INFO     | fitting pss+swap vs Time
[2026-02-03 08:25:41] 2026-02-02 23:25:00,435 | INFO     | sum of square deviations: 665612480.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,435 | INFO     | sum of deviations: -35924089134.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,435 | INFO     | mean x: 1770070784.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,435 | INFO     | mean y: 2471534.1627906975
[2026-02-03 08:25:41] 2026-02-02 23:25:00,435 | INFO     | intersect: 95535807414.38136
[2026-02-03 08:25:41] 2026-02-02 23:25:00,435 | INFO     | chi2: 2.490267654671623
[2026-02-03 08:25:41] 2026-02-02 23:25:00,435 | INFO     | sum of square deviations: 591173875.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | sum of deviations: -25790664671.50001
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | mean x: 1770070631.5
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | mean y: 2491828.685483871
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | intersect: 77223932139.94208
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | chi2: 1.8604184046864856
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | current chi2=1.8604184046864856 (change=25.292431871874104 %)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | sum of square deviations: 522502820.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | sum of deviations: -23082617221.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | mean x: 1770070479.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | mean y: 2497845.932773109
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | intersect: 78198935754.05566
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | chi2: 1.858480175751064
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | current chi2=1.858480175751064 (change=0.10418242103706404 %)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,436 | INFO     | right removable region: 118
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | sum of square deviations: 591173875.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | sum of deviations: -53783444562.50001
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | mean x: 1770070936.5
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | mean y: 2507314.10483871
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | intersect: 161038906436.00482
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | chi2: 0.8962176310648701
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | current chi2=0.8962176310648701 (change=64.01119255660697 %)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | sum of square deviations: 522502820.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | sum of deviations: -49662336199.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,437 | INFO     | mean x: 1770071089.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | mean y: 2498152.8403361347
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | intersect: 168242481083.55075
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | chi2: 0.8924085885275632
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | current chi2=0.8924085885275632 (change=0.4250131224020903 %)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | left removable region: 20
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | sum of square deviations: 291817564.5
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | sum of deviations: -28893114820.0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | mean x: 1770071058.5
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | mean y: 2508280.2040816327
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | intersect: 175258807264.22028
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | chi2: 0.20173818627600618
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | current memory leak: -99.01 B/s (using 98 data points, chi2=0.20)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,438 | INFO     | could have reported an average CPU frequency of 3599 MHz (8 samples)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | ..............................
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | . Timing measurements:
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | . get job = 0 s
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | . initial setup = 10 s
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | . payload setup = 3 s
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | . stage-in = 0 s
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | . payload execution = 7818 s
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | . stage-out = 0 s
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | . log creation = 0 s
[2026-02-03 08:25:41] 2026-02-02 23:25:00,439 | INFO     | ..............................
[2026-02-03 08:25:41] 2026-02-02 23:25:00,492 | INFO     | 
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | job summary report
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | --------------------------------------------------
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | PanDA job id: 6996582921
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | task id: 48317952
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | errors: (none)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | pilot state: finished 
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | transexitcode: 0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | exeerrorcode: 0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | exeerrordiag: 
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | exitcode: 0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | exitmsg: OK
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | cpuconsumptiontime: 21135 s
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | nevents: 400
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | neventsw: 0
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | pid: 1999004
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | pgrp: 1999004
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | corecount: 3
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | event service: False
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | sizes: {0: 2278272, 11: 2278272, 7825: 2306013, 7826: 2315066, 7828: 2315204}
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | --------------------------------------------------
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | 
[2026-02-03 08:25:41] 2026-02-02 23:25:00,493 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-02-03 08:25:41] 2026-02-02 23:25:00,502 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,502 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,502 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | job 6996582921 has completed (purged errors)
[2026-02-03 08:25:41] 2026-02-02 23:25:00,503 | INFO     | overall cleanup function is called
[2026-02-03 08:25:41] 2026-02-02 23:25:00,632 | INFO     | PID=1994525 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 08:25:41] 2026-02-02 23:25:01,509 | INFO     | --- collectZombieJob: --- 10, [1999004]
[2026-02-03 08:25:41] 2026-02-02 23:25:01,510 | INFO     | zombie collector waiting for pid 1999004
[2026-02-03 08:25:41] 2026-02-02 23:25:01,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 08:25:41] 2026-02-02 23:25:01,510 | INFO     | collected zombie processes
[2026-02-03 08:25:41] 2026-02-02 23:25:01,510 | INFO     | will attempt to kill all subprocesses of pid=1999004
[2026-02-03 08:25:41] 2026-02-02 23:25:01,539 | INFO     | process IDs to be killed: [1999004] (in reverse order)
[2026-02-03 08:25:41] 2026-02-02 23:25:01,559 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 08:25:41] 2026-02-02 23:25:01,559 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 08:25:41] 2026-02-02 23:25:01,560 | INFO     | did not find any defunct processes belonging to 1999004
[2026-02-03 08:25:41] 2026-02-02 23:25:01,561 | INFO     | did not find any defunct processes belonging to 1999004
[2026-02-03 08:25:41] 2026-02-02 23:25:01,561 | INFO     | ready for new job
[2026-02-03 08:25:41] 2026-02-02 23:25:01,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 08:25:41] 2026-02-02 23:25:01,562 | INFO     | **************************************
[2026-02-03 08:25:41] 2026-02-02 23:25:01,562 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 08:25:41] 2026-02-02 23:25:01,562 | INFO     | **************************************
[2026-02-03 08:25:41] 2026-02-02 23:25:01,562 | INFO     | 
[2026-02-03 08:25:41] 2026-02-02 23:25:01,562 | INFO     | architecture information:
[2026-02-03 08:25:41] 2026-02-02 23:25:01,563 | INFO     | executing command: cat /etc/os-release
[2026-02-03 08:25:41] 2026-02-02 23:25:01,569 | INFO     | cat /etc/os-release:
[2026-02-03 08:25:41] NAME="CentOS Linux"
[2026-02-03 08:25:41] VERSION="7 (Core)"
[2026-02-03 08:25:41] ID="centos"
[2026-02-03 08:25:41] ID_LIKE="rhel fedora"
[2026-02-03 08:25:41] VERSION_ID="7"
[2026-02-03 08:25:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 08:25:41] ANSI_COLOR="0;31"
[2026-02-03 08:25:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 08:25:41] HOME_URL="https://www.centos.org/"
[2026-02-03 08:25:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 08:25:41] 
[2026-02-03 08:25:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 08:25:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 08:25:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 08:25:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 08:25:41] 
[2026-02-03 08:25:41] 2026-02-02 23:25:01,569 | INFO     | **************************************
[2026-02-03 08:25:41] 2026-02-02 23:25:02,072 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-02-03 08:25:41] 2026-02-02 23:25:02,079 | INFO     | sufficient remaining disk space (132332388352 B)
[2026-02-03 08:25:41] 2026-02-02 23:25:02,080 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 08:25:41] 2026-02-02 23:25:02,080 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 08:25:41] 2026-02-02 23:25:02,080 | INFO     | update_server=False
[2026-02-03 08:25:41] 2026-02-02 23:25:02,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 08:25:41] 2026-02-02 23:25:02,080 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 08:25:41] 2026-02-02 23:25:02,080 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 08:25:41] 2026-02-02 23:25:02,080 | INFO     | aborting loop
[2026-02-03 08:25:41] 2026-02-02 23:25:02,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 08:25:41] 2026-02-02 23:25:02,529 | INFO     | all data control threads have been joined
[2026-02-03 08:25:41] 2026-02-02 23:25:02,554 | INFO     | all payload control threads have been joined
[2026-02-03 08:25:41] 2026-02-02 23:25:02,854 | INFO     | all job control threads have been joined
[2026-02-03 08:25:41] 2026-02-02 23:25:03,085 | INFO     | [job] retrieve thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:03,086 | INFO     | [job] queue monitor thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:03,086 | INFO     | [job] job monitor thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:03,194 | INFO     | [job] validate thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:03,226 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:03,534 | INFO     | [data] control thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:03,559 | INFO     | [payload] control thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:03,595 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:03,634 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:03,860 | INFO     | [job] control thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:04,086 | INFO     | [data] copytool_out thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:04,146 | INFO     | [data] copytool_in thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:04,449 | INFO     | [payload] validate_post thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:04,585 | INFO     | [payload] failed_post thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:05,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 08:25:41] 2026-02-02 23:25:09,101 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:12,346 | INFO     | job.realtimelogging is not enabled
[2026-02-03 08:25:41] 2026-02-02 23:25:13,351 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 08:25:41] 2026-02-02 23:25:32,725 | INFO     | PID=1994525 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 08:25:41] 2026-02-02 23:25:32,726 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 08:25:41] 2026-02-02 23:25:32,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 08:25:41] 2026-02-02 23:25:32,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 08:25:41] 2026-02-02 23:25:35,046 | INFO     | [monitor] cgroup control has ended
[2026-02-03 08:25:41] 2026-02-02 23:25:36,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627544184640)>', '<ExcThread(monitor, started 140627178133248)>']
[2026-02-03 08:25:41] 2026-02-02 23:25:36,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 08:25:41] 2026-02-02 23:25:36,746 | INFO     | [monitor] control thread has ended
[2026-02-03 08:25:41] 2026-02-02 23:25:41,074 | INFO     | all workflow threads have been joined
[2026-02-03 08:25:41] 2026-02-02 23:25:41,074 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 08:25:41] 2026-02-02 23:25:41,074 | INFO     | traces error code: 0
[2026-02-03 08:25:41] 2026-02-02 23:25:41,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 08:25:41] 2026-02-02 23:25:41,133 [wrapper] ==== pilot stdout END ====
[2026-02-03 08:25:41] 2026-02-02 23:25:41,134 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 08:25:41] 2026-02-02 23:25:41,135 [wrapper] pilotpid: 1994525
[2026-02-03 08:25:41] 2026-02-02 23:25:41,137 [wrapper] Pilot exit status: 0
[2026-02-03 08:25:41] 2026-02-02 23:25:41,143 [wrapper] pandaids: 6996582921
[2026-02-03 08:25:41] 2026-02-02 23:25:41,153 [wrapper] cleanup supervisor_pilot 2003880 1994526
[2026-02-03 08:25:41] 2026-02-02 23:25:41,155 [wrapper] Test setup, not cleaning
[2026-02-03 08:25:41] 2026-02-02 23:25:41,156 [wrapper] apfmon messages muted
[2026-02-03 08:25:41] 2026-02-02 23:25:41,158 [wrapper] ==== wrapper stdout END ====
[2026-02-03 08:25:41] 2026-02-02 23:25:41,159 [wrapper] ==== wrapper stderr END ====
[2026-02-03 08:25:41]  *** Error codes and diagnostics ***
[2026-02-03 08:25:41]     "exeErrorCode": 0,
[2026-02-03 08:25:41]     "exeErrorDiag": "",
[2026-02-03 08:25:41]     "pilotErrorCode": 0,
[2026-02-03 08:25:41]     "pilotErrorDiag": "",
[2026-02-03 08:25:41]  *** Listing of results directory ***
[2026-02-03 08:25:41] total 673224
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc    584422 Feb  2 14:08 pilot3.tar.gz
[2026-02-03 08:25:41] -rwx------. 1 boinc boinc     36322 Feb  2 14:10 runpilot2-wrapper.sh
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc      5111 Feb  2 14:12 queuedata.json
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc       100 Feb  3 06:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 08:25:41] -rwxr-xr-x. 1 boinc boinc      7986 Feb  3 06:12 run_atlas
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc       105 Feb  3 06:12 job.xml
[2026-02-03 08:25:41] -rw-r--r--. 2 boinc boinc     15845 Feb  3 06:12 start_atlas.sh
[2026-02-03 08:25:41] drwxrwx--x. 2 boinc boinc        68 Feb  3 06:12 shared
[2026-02-03 08:25:41] -rw-r--r--. 2 boinc boinc    597751 Feb  3 06:12 input.tar.gz
[2026-02-03 08:25:41] -rw-r--r--. 2 boinc boinc 501871594 Feb  3 06:12 EVNT.48317949._000140.pool.root.1
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc         0 Feb  3 06:12 boinc_lockfile
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc      2522 Feb  3 06:13 pandaJob.out
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc   1009316 Feb  3 06:14 agis_schedconf.cvmfs.json
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc   1511668 Feb  3 06:14 agis_ddmendpoints.agis.ALL.json
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc       418 Feb  3 06:14 workernode_map.json
[2026-02-03 08:25:41] drwx------. 5 boinc boinc      4096 Feb  3 06:14 pilot3
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc      9319 Feb  3 08:21 init_data.xml
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc 180709897 Feb  3 08:24 HITS.48317952._007535.pool.root.1
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc       530 Feb  3 08:24 boinc_task_state.xml
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc      1012 Feb  3 08:24 memory_monitor_summary.json
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc    324011 Feb  3 08:24 log.48317952._007535.job.log.tgz.1
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc      6308 Feb  3 08:25 heartbeat.json
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc        95 Feb  3 08:25 pilot_heartbeat.json
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc      8192 Feb  3 08:25 boinc_mmap_file
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc        27 Feb  3 08:25 wrapper_checkpoint.txt
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc      4817 Feb  3 08:25 pilotlog.txt
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc   1108902 Feb  3 08:25 log.48317952._007535.job.log.1
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc       357 Feb  3 08:25 output.list
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc       620 Feb  3 08:25 runtime_log
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc   1454080 Feb  3 08:25 result.tar.gz
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc       643 Feb  3 08:25 XzUKDm4N168nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmk4RKDml4TjQo.diag
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc      8774 Feb  3 08:25 runtime_log.err
[2026-02-03 08:25:41] -rw-r--r--. 1 boinc boinc     20781 Feb  3 08:25 stderr.txt
[2026-02-03 08:25:41] HITS file was successfully produced:
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc 180709897 Feb  3 08:24 shared/HITS.pool.root.1
[2026-02-03 08:25:41]  *** Contents of shared directory: ***
[2026-02-03 08:25:41] total 668608
[2026-02-03 08:25:41] -rw-r--r--. 2 boinc boinc     15845 Feb  3 06:12 start_atlas.sh
[2026-02-03 08:25:41] -rw-r--r--. 2 boinc boinc    597751 Feb  3 06:12 input.tar.gz
[2026-02-03 08:25:41] -rw-r--r--. 2 boinc boinc 501871594 Feb  3 06:12 ATLAS.root_0
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc 180709897 Feb  3 08:24 HITS.pool.root.1
[2026-02-03 08:25:41] -rw-------. 1 boinc boinc   1454080 Feb  3 08:25 result.tar.gz
08:25:43 (1990517): run_atlas exited; CPU time 21167.228189
08:25:43 (1990517): called boinc_finish(0)

</stderr_txt>
]]>

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