Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:25:28 (10467): wrapper (7.7.26015): starting
23:25:28 (10467): wrapper: running run_atlas (--nthreads 12)
[2026-02-01 23:25:28] Arguments: --nthreads 12
[2026-02-01 23:25:28] Threads: 12
[2026-02-01 23:25:28] Checking for CVMFS
[2026-02-01 23:25:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 23:25:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 23:25:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 23:25:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 23:25:29] 2.11.2.0 3103 175094 104268 155774 1 49 14650103 20275201 1 130560 0 74535719 99.921 9309269 30556 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-01 23:25:29] CVMFS is ok
[2026-02-01 23:25:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 23:25:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 23:25:29] Further information can be found at the LHC@home message board.
[2026-02-01 23:25:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 23:25:29] Checking for apptainer binary...
[2026-02-01 23:25:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 23:25:29] Running /usr/bin/apptainer --version
[2026-02-01 23:25:29] apptainer version 1.3.2-1.el7
[2026-02-01 23:25:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 23:25:30] c-115-41.aglt2.org
[2026-02-01 23:25:30] apptainer works
[2026-02-01 23:25:30] Set ATHENA_PROC_NUMBER=12
[2026-02-01 23:25:30] Set ATHENA_CORE_NUMBER=12
[2026-02-01 23:25:30] Starting ATLAS job with PandaID=6992963602
[2026-02-01 23:25:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 00:25:06]  *** The last 200 lines of the pilot log: ***
[2026-02-02 00:25:06]  filetype=log
[2026-02-02 00:25:06]  guid=a62a75c3-fc53-441d-8b3e-c0486f4116a6
[2026-02-02 00:25:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-02 00:25:06]  is_altstaged=None
[2026-02-02 00:25:06]  is_tar=False
[2026-02-02 00:25:06]  lfn=log.48310749._003847.job.log.tgz.1
[2026-02-02 00:25:06]  mtime=0
[2026-02-02 00:25:06]  protocol_id=None
[2026-02-02 00:25:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-02 00:25:06]  replicas=None
[2026-02-02 00:25:06]  scope=mc23_13p6TeV
[2026-02-02 00:25:06]  status=None
[2026-02-02 00:25:06]  status_code=0
[2026-02-02 00:25:06]  storage_token=
[2026-02-02 00:25:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6992963602/log.48310749._003847.job.log.tgz.1
[2026-02-02 00:25:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/05/log.48310749._003847.job.log.tgz.1
[2026-02-02 00:25:06]  workdir=None
[2026-02-02 00:25:06] ]
[2026-02-02 00:25:06] 2026-02-02 05:24:33,655 | INFO     | transferring file log.48310749._003847.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6992963602/log.48310749._003847.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-02 00:25:06] 2026-02-02 05:24:33,655 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6992963602/log.48310749._003847.job.log.tgz.1 /tmp/boinchome/slots/0/log.48310749._003847.job
[2026-02-02 00:25:06] 2026-02-02 05:24:33,677 | INFO     | adding to output.list: log.48310749._003847.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/05/log.48310749._003847.job.log.tg
[2026-02-02 00:25:06] 2026-02-02 05:24:33,678 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-02 00:25:06] 2026-02-02 05:24:33,678 | INFO     | summary of transferred files:
[2026-02-02 00:25:06] 2026-02-02 05:24:33,678 | INFO     |  -- lfn=log.48310749._003847.job.log.tgz.1, status_code=0, status=transferred
[2026-02-02 00:25:06] 2026-02-02 05:24:33,679 | INFO     | stage-out finished correctly
[2026-02-02 00:25:06] 2026-02-02 05:24:34,411 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-02 00:25:06] 2026-02-02 05:24:34,482 | INFO     | job 6992963602 has state=finished
[2026-02-02 00:25:06] 2026-02-02 05:24:34,482 | INFO     | preparing for final server update for job 6992963602 in state='finished'
[2026-02-02 00:25:06] 2026-02-02 05:24:34,483 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6992963602/jobReport.json
[2026-02-02 00:25:06] 2026-02-02 05:24:34,486 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-02 00:25:06] 2026-02-02 05:24:34,486 | INFO     | this job has now completed (state=finished)
[2026-02-02 00:25:06] 2026-02-02 05:24:34,486 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 00:25:06] 2026-02-02 05:24:34,487 | INFO     | log transfer has been attempted: DONE
[2026-02-02 00:25:06] 2026-02-02 05:24:34,487 | INFO     | job 6992963602 has finished - writing final server update
[2026-02-02 00:25:06] 2026-02-02 05:24:34,487 | INFO     | total number of processed events: 400 (read)
[2026-02-02 00:25:06] 2026-02-02 05:24:34,489 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6992963602/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 00:25:06] 2026-02-02 05:24:34,489 | INFO     | extracted standard info from prmon json
[2026-02-02 00:25:06] 2026-02-02 05:24:34,490 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 00:25:06] 2026-02-02 05:24:34,490 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 00:25:06] 2026-02-02 05:24:34,490 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 00:25:06] 2026-02-02 05:24:34,490 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 00:25:06] 2026-02-02 05:24:34,491 | INFO     | fitting pss+swap vs Time
[2026-02-02 00:25:06] 2026-02-02 05:24:34,491 | INFO     | sum of square deviations: 41117050.0
[2026-02-02 00:25:06] 2026-02-02 05:24:34,491 | INFO     | sum of deviations: -3437577164.0
[2026-02-02 00:25:06] 2026-02-02 05:24:34,492 | INFO     | mean x: 1770008204.0
[2026-02-02 00:25:06] 2026-02-02 05:24:34,492 | INFO     | mean y: 2890755.9803921566
[2026-02-02 00:25:06] 2026-02-02 05:24:34,492 | INFO     | intersect: 147983832534.7085
[2026-02-02 00:25:06] 2026-02-02 05:24:34,492 | INFO     | chi2: 0.08934738154522787
[2026-02-02 00:25:06] 2026-02-02 05:24:34,492 | INFO     | current memory leak: -83.60 B/s (using 51 data points, chi2=0.09)
[2026-02-02 00:25:06] 2026-02-02 05:24:34,492 | INFO     | could have reported an average CPU frequency of 1718 MHz (5 samples)
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | ..............................
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | . Timing measurements:
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | . get job = 0 s
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | . initial setup = 7 s
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | . payload setup = 7 s
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | . stage-in = 0 s
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | . payload execution = 3499 s
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | . stage-out = 0 s
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | . log creation = 0 s
[2026-02-02 00:25:06] 2026-02-02 05:24:34,493 | INFO     | ..............................
[2026-02-02 00:25:06] 2026-02-02 05:24:34,562 | INFO     | 
[2026-02-02 00:25:06] 2026-02-02 05:24:34,562 | INFO     | job summary report
[2026-02-02 00:25:06] 2026-02-02 05:24:34,562 | INFO     | --------------------------------------------------
[2026-02-02 00:25:06] 2026-02-02 05:24:34,562 | INFO     | PanDA job id: 6992963602
[2026-02-02 00:25:06] 2026-02-02 05:24:34,562 | INFO     | task id: 48310749
[2026-02-02 00:25:06] 2026-02-02 05:24:34,562 | INFO     | errors: (none)
[2026-02-02 00:25:06] 2026-02-02 05:24:34,563 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 00:25:06] 2026-02-02 05:24:34,563 | INFO     | pilot state: finished 
[2026-02-02 00:25:06] 2026-02-02 05:24:34,563 | INFO     | transexitcode: 0
[2026-02-02 00:25:06] 2026-02-02 05:24:34,563 | INFO     | exeerrorcode: 0
[2026-02-02 00:25:06] 2026-02-02 05:24:34,563 | INFO     | exeerrordiag: 
[2026-02-02 00:25:06] 2026-02-02 05:24:34,563 | INFO     | exitcode: 0
[2026-02-02 00:25:06] 2026-02-02 05:24:34,564 | INFO     | exitmsg: OK
[2026-02-02 00:25:06] 2026-02-02 05:24:34,564 | INFO     | cpuconsumptiontime: 37331 s
[2026-02-02 00:25:06] 2026-02-02 05:24:34,564 | INFO     | nevents: 400
[2026-02-02 00:25:06] 2026-02-02 05:24:34,564 | INFO     | neventsw: 0
[2026-02-02 00:25:06] 2026-02-02 05:24:34,564 | INFO     | pid: 18726
[2026-02-02 00:25:06] 2026-02-02 05:24:34,564 | INFO     | pgrp: 18726
[2026-02-02 00:25:06] 2026-02-02 05:24:34,565 | INFO     | corecount: 12
[2026-02-02 00:25:06] 2026-02-02 05:24:34,565 | INFO     | event service: False
[2026-02-02 00:25:06] 2026-02-02 05:24:34,565 | INFO     | sizes: {0: 2278223, 11: 2278223, 3510: 2303810, 3511: 2303809, 3512: 2312863, 3513: 2313273}
[2026-02-02 00:25:06] 2026-02-02 05:24:34,565 | INFO     | --------------------------------------------------
[2026-02-02 00:25:06] 2026-02-02 05:24:34,565 | INFO     | 
[2026-02-02 00:25:06] 2026-02-02 05:24:34,565 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-02 00:25:06] 2026-02-02 05:24:34,589 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,589 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,589 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,589 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,590 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,590 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,590 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,590 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,591 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,591 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,592 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 00:25:06] 2026-02-02 05:24:34,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,592 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 00:25:06] 2026-02-02 05:24:34,592 | INFO     | job 6992963602 has completed (purged errors)
[2026-02-02 00:25:06] 2026-02-02 05:24:34,592 | INFO     | overall cleanup function is called
[2026-02-02 00:25:06] 2026-02-02 05:24:35,522 | WARNING  | process 18726 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 00:25:06] 2026-02-02 05:24:35,593 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 00:25:06] 2026-02-02 05:24:35,601 | INFO     | --- collectZombieJob: --- 10, [18726]
[2026-02-02 00:25:06] 2026-02-02 05:24:35,601 | INFO     | zombie collector waiting for pid 18726
[2026-02-02 00:25:06] 2026-02-02 05:24:35,601 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 00:25:06] 2026-02-02 05:24:35,602 | INFO     | collected zombie processes
[2026-02-02 00:25:06] 2026-02-02 05:24:35,602 | INFO     | will attempt to kill all subprocesses of pid=18726
[2026-02-02 00:25:06] 2026-02-02 05:24:35,768 | INFO     | number of running child processes to parent process 18726: 1
[2026-02-02 00:25:06] 2026-02-02 05:24:35,769 | INFO     | maximum number of monitored processes: 6
[2026-02-02 00:25:06] 2026-02-02 05:24:35,769 | INFO     | aborting job monitoring since job object (job id=6992963602) has expired
[2026-02-02 00:25:06] 2026-02-02 05:24:35,776 | INFO     | process IDs to be killed: [18726] (in reverse order)
[2026-02-02 00:25:06] 2026-02-02 05:24:35,827 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 00:25:06] 2026-02-02 05:24:35,828 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 00:25:06] 2026-02-02 05:24:35,831 | INFO     | did not find any defunct processes belonging to 18726
[2026-02-02 00:25:06] 2026-02-02 05:24:35,833 | INFO     | did not find any defunct processes belonging to 18726
[2026-02-02 00:25:06] 2026-02-02 05:24:35,833 | INFO     | ready for new job
[2026-02-02 00:25:06] 2026-02-02 05:24:35,833 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 00:25:06] 2026-02-02 05:24:35,834 | INFO     | **************************************
[2026-02-02 00:25:06] 2026-02-02 05:24:35,834 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 00:25:06] 2026-02-02 05:24:35,834 | INFO     | **************************************
[2026-02-02 00:25:06] 2026-02-02 05:24:35,834 | INFO     | 
[2026-02-02 00:25:06] 2026-02-02 05:24:35,835 | INFO     | architecture information:
[2026-02-02 00:25:06] 2026-02-02 05:24:35,835 | INFO     | executing command: cat /etc/os-release
[2026-02-02 00:25:06] 2026-02-02 05:24:35,848 | INFO     | cat /etc/os-release:
[2026-02-02 00:25:06] NAME="CentOS Linux"
[2026-02-02 00:25:06] VERSION="7 (Core)"
[2026-02-02 00:25:06] ID="centos"
[2026-02-02 00:25:06] ID_LIKE="rhel fedora"
[2026-02-02 00:25:06] VERSION_ID="7"
[2026-02-02 00:25:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 00:25:06] ANSI_COLOR="0;31"
[2026-02-02 00:25:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 00:25:06] HOME_URL="https://www.centos.org/"
[2026-02-02 00:25:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 00:25:06] 
[2026-02-02 00:25:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 00:25:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 00:25:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 00:25:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 00:25:06] 
[2026-02-02 00:25:06] 2026-02-02 05:24:35,849 | INFO     | **************************************
[2026-02-02 00:25:06] 2026-02-02 05:24:36,352 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-02 00:25:06] 2026-02-02 05:24:36,369 | INFO     | sufficient remaining disk space (18022924288 B)
[2026-02-02 00:25:06] 2026-02-02 05:24:36,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 00:25:06] 2026-02-02 05:24:36,369 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 00:25:06] 2026-02-02 05:24:36,370 | INFO     | update_server=False
[2026-02-02 00:25:06] 2026-02-02 05:24:36,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 00:25:06] 2026-02-02 05:24:36,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 00:25:06] 2026-02-02 05:24:36,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 00:25:06] 2026-02-02 05:24:36,371 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 00:25:06] 2026-02-02 05:24:36,371 | INFO     | will abort loop
[2026-02-02 00:25:06] 2026-02-02 05:24:36,692 | INFO     | all data control threads have been joined
[2026-02-02 00:25:06] 2026-02-02 05:24:36,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 00:25:06] 2026-02-02 05:24:37,244 | INFO     | all job control threads have been joined
[2026-02-02 00:25:06] 2026-02-02 05:24:37,375 | INFO     | [job] retrieve thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:37,376 | INFO     | [job] queue monitor thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:37,377 | INFO     | [job] job monitor thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:37,632 | INFO     | [payload] failed_post thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:37,698 | INFO     | [data] control thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:37,834 | INFO     | [job] validate thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:37,868 | INFO     | all payload control threads have been joined
[2026-02-02 00:25:06] 2026-02-02 05:24:38,042 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:38,043 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:38,143 | INFO     | [payload] validate_post thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:38,249 | INFO     | [job] control thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:38,407 | INFO     | [data] copytool_in thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:38,675 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:38,761 | INFO     | [data] copytool_out thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:38,873 | INFO     | [payload] control thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:40,377 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:46,651 | INFO     | job.realtimelogging is not enabled
[2026-02-02 00:25:06] 2026-02-02 05:24:47,656 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 00:25:06] 2026-02-02 05:24:55,525 | INFO     | [monitor] cgroup control has ended
[2026-02-02 00:25:06] 2026-02-02 05:24:56,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140290532689728)>', '<ExcThread(monitor, started 140289201141504)>']
[2026-02-02 00:25:06] 2026-02-02 05:25:01,306 | INFO     | all workflow threads have been joined
[2026-02-02 00:25:06] 2026-02-02 05:25:01,306 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 00:25:06] 2026-02-02 05:25:01,306 | INFO     | traces error code: 0
[2026-02-02 00:25:06] 2026-02-02 05:25:01,307 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 00:25:06] 2026-02-02 05:25:05,948 | INFO     | PID=14216 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-02 00:25:06] 2026-02-02 05:25:05,949 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 00:25:06] 2026-02-02 05:25:05,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 00:25:06] 2026-02-02 05:25:05,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 00:25:06] 2026-02-02 05:25:05,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 00:25:06] 2026-02-02 05:25:05,949 | INFO     | [monitor] control thread has ended
[2026-02-02 00:25:06] 2026-02-02 05:25:06,031 [wrapper] ==== pilot stdout END ====
[2026-02-02 00:25:06] 2026-02-02 05:25:06,034 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 00:25:06] 2026-02-02 05:25:06,038 [wrapper] pilotpid: 14216
[2026-02-02 00:25:06] 2026-02-02 05:25:06,041 [wrapper] Pilot exit status: 0
[2026-02-02 00:25:06] 2026-02-02 05:25:06,056 [wrapper] pandaids: 6992963602
[2026-02-02 00:25:06] 2026-02-02 05:25:06,095 [wrapper] cleanup supervisor_pilot  5486 14217
[2026-02-02 00:25:06] 2026-02-02 05:25:06,099 [wrapper] Test setup, not cleaning
[2026-02-02 00:25:06] 2026-02-02 05:25:06,103 [wrapper] apfmon messages muted
[2026-02-02 00:25:06] 2026-02-02 05:25:06,106 [wrapper] ==== wrapper stdout END ====
[2026-02-02 00:25:06] 2026-02-02 05:25:06,110 [wrapper] ==== wrapper stderr END ====
[2026-02-02 00:25:06]  *** Error codes and diagnostics ***
[2026-02-02 00:25:06]     "exeErrorCode": 0,
[2026-02-02 00:25:06]     "exeErrorDiag": "",
[2026-02-02 00:25:06]     "pilotErrorCode": 0,
[2026-02-02 00:25:06]     "pilotErrorDiag": "",
[2026-02-02 00:25:06]  *** Listing of results directory ***
[2026-02-02 00:25:06] total 664972
[2026-02-02 00:25:06] -rwx------ 1 boincer umatlas     36322 Feb  1 19:08 runpilot2-wrapper.sh
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas      5111 Feb  1 19:08 queuedata.json
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas    584422 Feb  1 19:08 pilot3.tar.gz
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas       100 Feb  1 23:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 00:25:06] -rwxr-xr-x 1 boincer umatlas      7986 Feb  1 23:25 run_atlas
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas       105 Feb  1 23:25 job.xml
[2026-02-02 00:25:06] -rw-r--r-- 2 boincer umatlas 499780973 Feb  1 23:25 EVNT.48310747._000077.pool.root.1
[2026-02-02 00:25:06] -rw-r--r-- 2 boincer umatlas     15845 Feb  1 23:25 start_atlas.sh
[2026-02-02 00:25:06] drwxrwx--x 2 boincer umatlas      4096 Feb  1 23:25 shared
[2026-02-02 00:25:06] -rw-r--r-- 2 boincer umatlas    597754 Feb  1 23:25 input.tar.gz
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas         0 Feb  1 23:25 boinc_lockfile
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas      2523 Feb  1 23:25 pandaJob.out
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas        57 Feb  1 23:25 setup.sh.local
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas   1009823 Feb  1 23:25 agis_schedconf.cvmfs.json
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas   1511668 Feb  1 23:25 agis_ddmendpoints.agis.ALL.json
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas       433 Feb  1 23:25 workernode_map.json
[2026-02-02 00:25:06] drwx------ 5 boincer umatlas      4096 Feb  1 23:25 pilot3
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas      5954 Feb  2 00:20 init_data.xml
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas 175348875 Feb  2 00:24 HITS.48310749._003847.pool.root.1
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas      1045 Feb  2 00:24 memory_monitor_summary.json
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas        95 Feb  2 00:24 pilot_heartbeat.json
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas       530 Feb  2 00:24 boinc_task_state.xml
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas    407953 Feb  2 00:24 log.48310749._003847.job.log.tgz.1
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas      6403 Feb  2 00:24 heartbeat.json
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas      8192 Feb  2 00:25 boinc_mmap_file
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas        27 Feb  2 00:25 wrapper_checkpoint.txt
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas       745 Feb  2 00:25 pilotlog.txt
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas    523566 Feb  2 00:25 log.48310749._003847.job.log.1
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas       357 Feb  2 00:25 output.list
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas       620 Feb  2 00:25 runtime_log
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas    952320 Feb  2 00:25 result.tar.gz
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas      9343 Feb  2 00:25 runtime_log.err
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas       659 Feb  2 00:25 pnINDmhfw68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmkRRKDm04ShUm.diag
[2026-02-02 00:25:06] -rw-r--r-- 1 boincer umatlas     21271 Feb  2 00:25 stderr.txt
[2026-02-02 00:25:06] HITS file was successfully produced:
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas 175348875 Feb  2 00:24 shared/HITS.pool.root.1
[2026-02-02 00:25:06]  *** Contents of shared directory: ***
[2026-02-02 00:25:06] total 660844
[2026-02-02 00:25:06] -rw-r--r-- 2 boincer umatlas 499780973 Feb  1 23:25 ATLAS.root_0
[2026-02-02 00:25:06] -rw-r--r-- 2 boincer umatlas     15845 Feb  1 23:25 start_atlas.sh
[2026-02-02 00:25:06] -rw-r--r-- 2 boincer umatlas    597754 Feb  1 23:25 input.tar.gz
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas 175348875 Feb  2 00:24 HITS.pool.root.1
[2026-02-02 00:25:06] -rw------- 1 boincer umatlas    952320 Feb  2 00:25 result.tar.gz
00:25:07 (10467): run_atlas exited; CPU time 37299.060423
00:25:07 (10467): called boinc_finish(0)

</stderr_txt>
]]>

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