Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:30:47 (1924610): wrapper (7.7.26015): starting
22:30:47 (1924610): wrapper: running run_atlas (--nthreads 8)
[2026-02-01 22:30:47] Arguments: --nthreads 8
[2026-02-01 22:30:47] Threads: 8
[2026-02-01 22:30:47] Checking for CVMFS
[2026-02-01 22:30:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 22:30:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 22:30:48] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 22:30:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 22:30:49] 2.13.3.0 17216 127297 618684 155772 1 358 27612532 32935937 32123 16776704 0 1702916904 99.628 1686914898 50627 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-01 22:30:49] CVMFS is ok
[2026-02-01 22:30:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 22:30:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 22:30:49] Further information can be found at the LHC@home message board.
[2026-02-01 22:30:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 22:30:49] Checking for apptainer binary...
[2026-02-01 22:30:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 22:30:49] Running /usr/bin/apptainer --version
[2026-02-01 22:30:49] apptainer version 1.4.5-2.el9
[2026-02-01 22:30:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 22:31:09] c7-9-14.aglt2.org
[2026-02-01 22:31:09] apptainer works
[2026-02-01 22:31:09] Set ATHENA_PROC_NUMBER=8
[2026-02-01 22:31:09] Set ATHENA_CORE_NUMBER=8
[2026-02-01 22:31:09] Starting ATLAS job with PandaID=6987876198
[2026-02-01 22:31:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 00:10:16]  *** The last 200 lines of the pilot log: ***
[2026-02-02 00:10:16]  mtime=0
[2026-02-02 00:10:16]  protocol_id=None
[2026-02-02 00:10:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-02 00:10:16]  replicas=None
[2026-02-02 00:10:16]  scope=mc23_13p6TeV
[2026-02-02 00:10:16]  status=None
[2026-02-02 00:10:16]  status_code=0
[2026-02-02 00:10:16]  storage_token=
[2026-02-02 00:10:16]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6987876198/log.48317952._002154.job.log.tgz.1
[2026-02-02 00:10:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/9d/log.48317952._002154.job.log.tgz.1
[2026-02-02 00:10:16]  workdir=None
[2026-02-02 00:10:16] ]
[2026-02-02 00:10:16] 2026-02-02 05:09:15,181 | INFO     | transferring file log.48317952._002154.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6987876198/log.48317952._002154.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-02 00:10:16] 2026-02-02 05:09:15,182 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6987876198/log.48317952._002154.job.log.tgz.1 /tmp/boinchome/slots/5/log.48317952._002154.job
[2026-02-02 00:10:16] 2026-02-02 05:09:15,254 | INFO     | adding to output.list: log.48317952._002154.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/9d/log.48317952._002154.job.log.tg
[2026-02-02 00:10:16] 2026-02-02 05:09:15,255 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-02 00:10:16] 2026-02-02 05:09:15,255 | INFO     | summary of transferred files:
[2026-02-02 00:10:16] 2026-02-02 05:09:15,255 | INFO     |  -- lfn=log.48317952._002154.job.log.tgz.1, status_code=0, status=transferred
[2026-02-02 00:10:16] 2026-02-02 05:09:15,255 | INFO     | stage-out finished correctly
[2026-02-02 00:10:16] 2026-02-02 05:09:15,288 | INFO     | time since job start (5777s) is within the limit (349056.0s)
[2026-02-02 00:10:16] 2026-02-02 05:09:15,773 | WARNING  | process 1952337 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 00:10:16] 2026-02-02 05:09:15,774 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6987876198/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 00:10:16] 2026-02-02 05:09:15,774 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6987876198/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 00:10:16] 2026-02-02 05:09:15,774 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-02 00:10:16] 2026-02-02 05:09:15,774 | WARNING  | maxPSS not found in memory monitor output
[2026-02-02 00:10:16] 2026-02-02 05:09:16,834 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-02 00:10:16] 2026-02-02 05:09:17,044 | INFO     | number of running child processes to parent process 1952337: 1
[2026-02-02 00:10:16] 2026-02-02 05:09:17,044 | INFO     | maximum number of monitored processes: 6
[2026-02-02 00:10:16] 2026-02-02 05:09:17,302 | INFO     | time since job start (5779s) is within the limit (349056.0s)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,341 | INFO     | job 6987876198 has state=finished
[2026-02-02 00:10:16] 2026-02-02 05:09:17,341 | INFO     | preparing for final server update for job 6987876198 in state='finished'
[2026-02-02 00:10:16] 2026-02-02 05:09:17,342 | INFO     | reading metadata from: /tmp/boinchome/slots/5/PanDA_Pilot-6987876198/jobReport.json
[2026-02-02 00:10:16] 2026-02-02 05:09:17,343 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/5/workernode_map.json
[2026-02-02 00:10:16] 2026-02-02 05:09:17,343 | INFO     | this job has now completed (state=finished)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,343 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,343 | INFO     | log transfer has been attempted: DONE
[2026-02-02 00:10:16] 2026-02-02 05:09:17,343 | INFO     | job 6987876198 has finished - writing final server update
[2026-02-02 00:10:16] 2026-02-02 05:09:17,343 | INFO     | total number of processed events: 400 (read)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,463 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6987876198/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,479 | INFO     | extracted standard info from prmon json
[2026-02-02 00:10:16] 2026-02-02 05:09:17,479 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 00:10:16] 2026-02-02 05:09:17,479 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 00:10:16] 2026-02-02 05:09:17,479 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 00:10:16] 2026-02-02 05:09:17,479 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 00:10:16] 2026-02-02 05:09:17,480 | INFO     | fitting pss+swap vs Time
[2026-02-02 00:10:16] 2026-02-02 05:09:17,481 | INFO     | sum of square deviations: 204182263.7471262
[2026-02-02 00:10:16] 2026-02-02 05:09:17,481 | INFO     | sum of deviations: -1520074478.3103442
[2026-02-02 00:10:16] 2026-02-02 05:09:17,481 | INFO     | mean x: 1770006191.1609194
[2026-02-02 00:10:16] 2026-02-02 05:09:17,481 | INFO     | mean y: 2536315.379310345
[2026-02-02 00:10:16] 2026-02-02 05:09:17,481 | INFO     | intersect: 13179690825.563267
[2026-02-02 00:10:16] 2026-02-02 05:09:17,481 | INFO     | chi2: 0.11345332068341872
[2026-02-02 00:10:16] 2026-02-02 05:09:17,481 | INFO     | current memory leak: -7.44 B/s (using 87 data points, chi2=0.11)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,481 | INFO     | could have reported an average CPU frequency of 3800 MHz (7 samples)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,481 | INFO     | ..............................
[2026-02-02 00:10:16] 2026-02-02 05:09:17,482 | INFO     | . Timing measurements:
[2026-02-02 00:10:16] 2026-02-02 05:09:17,482 | INFO     | . get job = 0 s
[2026-02-02 00:10:16] 2026-02-02 05:09:17,482 | INFO     | . initial setup = 38 s
[2026-02-02 00:10:16] 2026-02-02 05:09:17,482 | INFO     | . payload setup = 42 s
[2026-02-02 00:10:16] 2026-02-02 05:09:17,482 | INFO     | . stage-in = 0 s
[2026-02-02 00:10:16] 2026-02-02 05:09:17,482 | INFO     | . payload execution = 5710 s
[2026-02-02 00:10:16] 2026-02-02 05:09:17,482 | INFO     | . stage-out = 3 s
[2026-02-02 00:10:16] 2026-02-02 05:09:17,482 | INFO     | . log creation = 0 s
[2026-02-02 00:10:16] 2026-02-02 05:09:17,482 | INFO     | ..............................
[2026-02-02 00:10:16] 2026-02-02 05:09:17,811 | INFO     | 
[2026-02-02 00:10:16] 2026-02-02 05:09:17,811 | INFO     | job summary report
[2026-02-02 00:10:16] 2026-02-02 05:09:17,811 | INFO     | --------------------------------------------------
[2026-02-02 00:10:16] 2026-02-02 05:09:17,811 | INFO     | PanDA job id: 6987876198
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | task id: 48317952
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | errors: (none)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | pilot state: finished 
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | transexitcode: 0
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | exeerrorcode: 0
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | exeerrordiag: 
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | exitcode: 0
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | exitmsg: OK
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | cpuconsumptiontime: 23757 s
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | nevents: 400
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | neventsw: 0
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | pid: 1952337
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | pgrp: 1952337
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | corecount: 8
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | event service: False
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | sizes: {0: 2277779, 1: 2277863, 2: 2278324, 13: 2278324, 5757: 2305046, 5758: 2305045, 5763: 2314227, 5765: 2314283, 5766: 2314477}
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | --------------------------------------------------
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | 
[2026-02-02 00:10:16] 2026-02-02 05:09:17,812 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-02-02 00:10:16] 2026-02-02 05:09:17,869 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | job 6987876198 has completed (purged errors)
[2026-02-02 00:10:16] 2026-02-02 05:09:17,870 | INFO     | overall cleanup function is called
[2026-02-02 00:10:16] 2026-02-02 05:09:18,883 | INFO     | --- collectZombieJob: --- 10, [1952337]
[2026-02-02 00:10:16] 2026-02-02 05:09:18,883 | INFO     | zombie collector waiting for pid 1952337
[2026-02-02 00:10:16] 2026-02-02 05:09:18,883 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 00:10:16] 2026-02-02 05:09:18,883 | INFO     | collected zombie processes
[2026-02-02 00:10:16] 2026-02-02 05:09:18,884 | INFO     | will attempt to kill all subprocesses of pid=1952337
[2026-02-02 00:10:16] 2026-02-02 05:09:20,650 | INFO     | process IDs to be killed: [1952337] (in reverse order)
[2026-02-02 00:10:16] 2026-02-02 05:09:21,121 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 00:10:16] 2026-02-02 05:09:21,121 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 00:10:16] 2026-02-02 05:09:21,143 | INFO     | did not find any defunct processes belonging to 1952337
[2026-02-02 00:10:16] 2026-02-02 05:09:21,179 | INFO     | did not find any defunct processes belonging to 1952337
[2026-02-02 00:10:16] 2026-02-02 05:09:21,180 | INFO     | ready for new job
[2026-02-02 00:10:16] 2026-02-02 05:09:21,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 00:10:16] 2026-02-02 05:09:21,181 | INFO     | **************************************
[2026-02-02 00:10:16] 2026-02-02 05:09:21,181 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 00:10:16] 2026-02-02 05:09:21,181 | INFO     | **************************************
[2026-02-02 00:10:16] 2026-02-02 05:09:21,181 | INFO     | 
[2026-02-02 00:10:16] 2026-02-02 05:09:21,284 | INFO     | architecture information:
[2026-02-02 00:10:16] 2026-02-02 05:09:21,399 | INFO     | executing command: cat /etc/os-release
[2026-02-02 00:10:16] 2026-02-02 05:09:21,479 | INFO     | cat /etc/os-release:
[2026-02-02 00:10:16] NAME="CentOS Linux"
[2026-02-02 00:10:16] VERSION="7 (Core)"
[2026-02-02 00:10:16] ID="centos"
[2026-02-02 00:10:16] ID_LIKE="rhel fedora"
[2026-02-02 00:10:16] VERSION_ID="7"
[2026-02-02 00:10:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 00:10:16] ANSI_COLOR="0;31"
[2026-02-02 00:10:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 00:10:16] HOME_URL="https://www.centos.org/"
[2026-02-02 00:10:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 00:10:16] 
[2026-02-02 00:10:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 00:10:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 00:10:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 00:10:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 00:10:16] 
[2026-02-02 00:10:16] 2026-02-02 05:09:21,479 | INFO     | **************************************
[2026-02-02 00:10:16] 2026-02-02 05:09:21,993 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-02-02 00:10:16] 2026-02-02 05:09:22,077 | INFO     | sufficient remaining disk space (67488448512 B)
[2026-02-02 00:10:16] 2026-02-02 05:09:22,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 00:10:16] 2026-02-02 05:09:22,077 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 00:10:16] 2026-02-02 05:09:22,077 | INFO     | update_server=False
[2026-02-02 00:10:16] 2026-02-02 05:09:22,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 00:10:16] 2026-02-02 05:09:22,077 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-02 00:10:16] 2026-02-02 05:09:22,077 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-02 00:10:16] 2026-02-02 05:09:22,078 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 00:10:16] 2026-02-02 05:09:22,078 | INFO     | will abort loop
[2026-02-02 00:10:16] 2026-02-02 05:09:22,214 | INFO     | all payload control threads have been joined
[2026-02-02 00:10:16] 2026-02-02 05:09:22,258 | INFO     | all job control threads have been joined
[2026-02-02 00:10:16] 2026-02-02 05:09:22,806 | INFO     | all data control threads have been joined
[2026-02-02 00:10:16] 2026-02-02 05:09:22,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 00:10:16] 2026-02-02 05:09:23,083 | INFO     | [job] retrieve thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,084 | INFO     | [job] job monitor thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,085 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,220 | INFO     | [payload] control thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,264 | INFO     | [job] control thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 00:10:16] 2026-02-02 05:09:23,378 | INFO     | [payload] validate_post thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,399 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,415 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,417 | INFO     | [job] validate thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,436 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,436 | INFO     | [data] copytool_in thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,445 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 00:10:16] 2026-02-02 05:09:23,812 | INFO     | [data] control thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:23,834 | INFO     | [job] queue monitor thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:24,152 | INFO     | [payload] failed_post thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:25,454 | INFO     | [data] copytool_out thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:27,332 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 00:10:16] 2026-02-02 05:09:53,106 | INFO     | PID=1936967 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 00:10:16] 2026-02-02 05:09:53,107 | INFO     | .. there are 47 such processes running
[2026-02-02 00:10:16] 2026-02-02 05:09:53,107 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 00:10:16] 2026-02-02 05:09:53,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 00:10:16] 2026-02-02 05:09:53,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 00:10:16] 2026-02-02 05:10:08,019 | INFO     | [monitor] cgroup control has ended
[2026-02-02 00:10:16] 2026-02-02 05:10:09,667 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139803982735168)>', '<ExcThread(monitor, started 139803249071872)>']
[2026-02-02 00:10:16] 2026-02-02 05:10:10,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 00:10:16] 2026-02-02 05:10:10,254 | INFO     | [monitor] control thread has ended
[2026-02-02 00:10:16] 2026-02-02 05:10:14,693 | INFO     | all workflow threads have been joined
[2026-02-02 00:10:16] 2026-02-02 05:10:14,693 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 00:10:16] 2026-02-02 05:10:14,694 | INFO     | traces error code: 0
[2026-02-02 00:10:16] 2026-02-02 05:10:14,694 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 00:10:16] 2026-02-02 05:10:15,391 [wrapper] ==== pilot stdout END ====
[2026-02-02 00:10:16] 2026-02-02 05:10:15,410 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 00:10:16] 2026-02-02 05:10:15,468 [wrapper] pilotpid: 1936967
[2026-02-02 00:10:16] 2026-02-02 05:10:15,503 [wrapper] Pilot exit status: 0
[2026-02-02 00:10:16] 2026-02-02 05:10:15,659 [wrapper] pandaids: 6987876198
[2026-02-02 00:10:16] 2026-02-02 05:10:16,087 [wrapper] cleanup supervisor_pilot 2452385 1936968
[2026-02-02 00:10:16] 2026-02-02 05:10:16,109 [wrapper] Test setup, not cleaning
[2026-02-02 00:10:16] 2026-02-02 05:10:16,145 [wrapper] apfmon messages muted
[2026-02-02 00:10:16] 2026-02-02 05:10:16,171 [wrapper] ==== wrapper stdout END ====
[2026-02-02 00:10:16] 2026-02-02 05:10:16,178 [wrapper] ==== wrapper stderr END ====
[2026-02-02 00:10:16]  *** Error codes and diagnostics ***
[2026-02-02 00:10:16]     "exeErrorCode": 0,
[2026-02-02 00:10:16]     "exeErrorDiag": "",
[2026-02-02 00:10:16]     "pilotErrorCode": 0,
[2026-02-02 00:10:16]     "pilotErrorDiag": "",
[2026-02-02 00:10:16]  *** Listing of results directory ***
[2026-02-02 00:10:16] total 669916
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas    584422 Jan 28 15:38 pilot3.tar.gz
[2026-02-02 00:10:16] -rwx------. 1 boincer umatlas     36322 Jan 28 15:41 runpilot2-wrapper.sh
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas      5111 Jan 28 15:42 queuedata.json
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas       100 Feb  1 22:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 00:10:16] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  1 22:30 run_atlas
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas       105 Feb  1 22:30 job.xml
[2026-02-02 00:10:16] -rw-r--r--. 2 boincer umatlas 497973008 Feb  1 22:30 EVNT.48317949._000043.pool.root.1
[2026-02-02 00:10:16] -rw-r--r--. 2 boincer umatlas     15845 Feb  1 22:30 start_atlas.sh
[2026-02-02 00:10:16] drwxrwx--x. 2 boincer umatlas      4096 Feb  1 22:30 shared
[2026-02-02 00:10:16] -rw-r--r--. 2 boincer umatlas    597762 Feb  1 22:30 input.tar.gz
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas         0 Feb  1 22:30 boinc_lockfile
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas      2520 Feb  1 22:31 pandaJob.out
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas        57 Feb  1 22:31 setup.sh.local
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas   1009823 Feb  1 22:32 agis_schedconf.cvmfs.json
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas   1511668 Feb  1 22:32 agis_ddmendpoints.agis.ALL.json
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas       430 Feb  1 22:32 workernode_map.json
[2026-02-02 00:10:16] drwx------. 5 boincer umatlas      4096 Feb  1 22:32 pilot3
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas      7172 Feb  2 00:04 init_data.xml
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas 181831018 Feb  2 00:08 HITS.48317952._002154.pool.root.1
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas       530 Feb  2 00:08 boinc_task_state.xml
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas      1034 Feb  2 00:09 memory_monitor_summary.json
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas        95 Feb  2 00:09 pilot_heartbeat.json
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas    356776 Feb  2 00:09 log.48317952._002154.job.log.tgz.1
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas      6331 Feb  2 00:09 heartbeat.json
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas      8192 Feb  2 00:10 boinc_mmap_file
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas        27 Feb  2 00:10 wrapper_checkpoint.txt
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas      5006 Feb  2 00:10 pilotlog.txt
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas    776421 Feb  2 00:10 log.48317952._002154.job.log.1
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas       357 Feb  2 00:10 output.list
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas       620 Feb  2 00:10 runtime_log
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas   1146880 Feb  2 00:10 result.tar.gz
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas       651 Feb  2 00:10 T5zMDmUXR58n9Rq4apOajLDm4fhM0noT9bVooX4SDmr2GKDmeJ6fYn.diag
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas      9336 Feb  2 00:10 runtime_log.err
[2026-02-02 00:10:16] -rw-r--r--. 1 boincer umatlas      2146 Feb  2 00:10 stderr.txt
[2026-02-02 00:10:16] HITS file was successfully produced:
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas 181831018 Feb  2 00:08 shared/HITS.pool.root.1
[2026-02-02 00:10:16]  *** Contents of shared directory: ***
[2026-02-02 00:10:16] total 665604
[2026-02-02 00:10:16] -rw-r--r--. 2 boincer umatlas 497973008 Feb  1 22:30 ATLAS.root_0
[2026-02-02 00:10:16] -rw-r--r--. 2 boincer umatlas     15845 Feb  1 22:30 start_atlas.sh
[2026-02-02 00:10:16] -rw-r--r--. 2 boincer umatlas    597762 Feb  1 22:30 input.tar.gz
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas 181831018 Feb  2 00:08 HITS.pool.root.1
[2026-02-02 00:10:16] -rw-------. 1 boincer umatlas   1146880 Feb  2 00:10 result.tar.gz
00:10:18 (1924610): run_atlas exited; CPU time 23879.200793
00:10:18 (1924610): called boinc_finish(0)

</stderr_txt>
]]>

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