Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:06:13 (1115620): wrapper (7.7.26015): starting
22:06:13 (1115620): wrapper: running run_atlas (--nthreads 3)
[2026-02-02 22:06:13] Arguments: --nthreads 3
[2026-02-02 22:06:13] Threads: 3
[2026-02-02 22:06:13] Checking for CVMFS
[2026-02-02 22:06:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 22:06:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 22:06:14] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 22:06:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 22:06:14] 2.9.2.0 4126046 7658 85756 155805 0 49 19338008 36864000 0 130560 0 3403823 99.986 250000 6519 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 22:06:14] CVMFS is ok
[2026-02-02 22:06:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 22:06:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 22:06:14] Further information can be found at the LHC@home message board.
[2026-02-02 22:06:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 22:06:14] Checking for apptainer binary...
[2026-02-02 22:06:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 22:06:14] Running /usr/bin/apptainer --version
[2026-02-02 22:06:14] apptainer version 1.4.1-1.1
[2026-02-02 22:06:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 22:06:14] thA371
[2026-02-02 22:06:14] apptainer works
[2026-02-02 22:06:14] Set ATHENA_PROC_NUMBER=3
[2026-02-02 22:06:14] Set ATHENA_CORE_NUMBER=3
[2026-02-02 22:06:14] Starting ATLAS job with PandaID=6992859252
[2026-02-02 22:06:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 23:29:36]  *** The last 200 lines of the pilot log: ***
[2026-02-02 23:29:36] 2026-02-02 22:29:04,728 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,728 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,728 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,728 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | job 6992859252 has completed (purged errors)
[2026-02-02 23:29:36] 2026-02-02 22:29:04,729 | INFO     | overall cleanup function is called
[2026-02-02 23:29:36] 2026-02-02 22:29:05,735 | INFO     | --- collectZombieJob: --- 10, [1124082]
[2026-02-02 23:29:36] 2026-02-02 22:29:05,736 | INFO     | zombie collector waiting for pid 1124082
[2026-02-02 23:29:36] 2026-02-02 22:29:05,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 23:29:36] 2026-02-02 22:29:05,736 | INFO     | collected zombie processes
[2026-02-02 23:29:36] 2026-02-02 22:29:05,736 | INFO     | will attempt to kill all subprocesses of pid=1124082
[2026-02-02 23:29:36] 2026-02-02 22:29:05,778 | INFO     | process IDs to be killed: [1124082] (in reverse order)
[2026-02-02 23:29:36] 2026-02-02 22:29:05,802 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 23:29:36] 2026-02-02 22:29:05,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 23:29:36] 2026-02-02 22:29:05,804 | INFO     | did not find any defunct processes belonging to 1124082
[2026-02-02 23:29:36] 2026-02-02 22:29:05,805 | INFO     | did not find any defunct processes belonging to 1124082
[2026-02-02 23:29:36] 2026-02-02 22:29:05,805 | INFO     | ready for new job
[2026-02-02 23:29:36] 2026-02-02 22:29:05,805 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 23:29:36] 2026-02-02 22:29:05,805 | INFO     | **************************************
[2026-02-02 23:29:36] 2026-02-02 22:29:05,806 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 23:29:36] 2026-02-02 22:29:05,806 | INFO     | **************************************
[2026-02-02 23:29:36] 2026-02-02 22:29:05,806 | INFO     | 
[2026-02-02 23:29:36] 2026-02-02 22:29:05,806 | INFO     | architecture information:
[2026-02-02 23:29:36] 2026-02-02 22:29:05,806 | INFO     | executing command: cat /etc/os-release
[2026-02-02 23:29:36] 2026-02-02 22:29:05,814 | INFO     | cat /etc/os-release:
[2026-02-02 23:29:36] NAME="CentOS Linux"
[2026-02-02 23:29:36] VERSION="7 (Core)"
[2026-02-02 23:29:36] ID="centos"
[2026-02-02 23:29:36] ID_LIKE="rhel fedora"
[2026-02-02 23:29:36] VERSION_ID="7"
[2026-02-02 23:29:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 23:29:36] ANSI_COLOR="0;31"
[2026-02-02 23:29:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 23:29:36] HOME_URL="https://www.centos.org/"
[2026-02-02 23:29:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 23:29:36] 
[2026-02-02 23:29:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 23:29:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 23:29:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 23:29:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 23:29:36] 
[2026-02-02 23:29:36] 2026-02-02 22:29:05,815 | INFO     | **************************************
[2026-02-02 23:29:36] 2026-02-02 22:29:06,318 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 23:29:36] 2026-02-02 22:29:06,331 | INFO     | sufficient remaining disk space (335854698496 B)
[2026-02-02 23:29:36] 2026-02-02 22:29:06,331 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 23:29:36] 2026-02-02 22:29:06,331 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 23:29:36] 2026-02-02 22:29:06,331 | INFO     | update_server=False
[2026-02-02 23:29:36] 2026-02-02 22:29:06,331 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 23:29:36] 2026-02-02 22:29:06,331 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 23:29:36] 2026-02-02 22:29:06,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 23:29:36] 2026-02-02 22:29:06,609 | INFO     | all data control threads have been joined
[2026-02-02 23:29:36] 2026-02-02 22:29:06,868 | INFO     | all job control threads have been joined
[2026-02-02 23:29:36] 2026-02-02 22:29:07,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 23:29:36] 2026-02-02 22:29:07,317 | INFO     | aborting loop
[2026-02-02 23:29:36] 2026-02-02 22:29:07,337 | INFO     | [job] retrieve thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:07,337 | INFO     | [job] queue monitor thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:07,457 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:07,615 | INFO     | [data] control thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:07,728 | INFO     | all payload control threads have been joined
[2026-02-02 23:29:36] 2026-02-02 22:29:07,735 | INFO     | [payload] failed_post thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:07,874 | INFO     | [job] control thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:08,169 | INFO     | [job] validate thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:08,257 | INFO     | [payload] validate_post thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:08,264 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:08,264 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:08,323 | INFO     | [job] job monitor thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:08,337 | INFO     | [data] copytool_out thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:08,440 | INFO     | [data] copytool_in thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:08,734 | INFO     | [payload] control thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:09,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 23:29:36] 2026-02-02 22:29:13,784 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:16,870 | INFO     | job.realtimelogging is not enabled
[2026-02-02 23:29:36] 2026-02-02 22:29:17,876 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 23:29:36] 2026-02-02 22:29:29,411 | INFO     | [monitor] cgroup control has ended
[2026-02-02 23:29:36] 2026-02-02 22:29:29,910 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465121335104)>', '<ExcThread(monitor, started 140464330098432)>']
[2026-02-02 23:29:36] 2026-02-02 22:29:34,928 | INFO     | all workflow threads have been joined
[2026-02-02 23:29:36] 2026-02-02 22:29:34,928 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 23:29:36] 2026-02-02 22:29:34,928 | INFO     | traces error code: 0
[2026-02-02 23:29:36] 2026-02-02 22:29:34,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 23:29:36] 2026-02-02 22:29:35,981 | INFO     | PID=1119656 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 23:29:36] 2026-02-02 22:29:35,981 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 23:29:36] 2026-02-02 22:29:35,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 23:29:36] 2026-02-02 22:29:35,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 23:29:36] 2026-02-02 22:29:35,982 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 23:29:36] 2026-02-02 22:29:35,982 | INFO     | [monitor] control thread has ended
[2026-02-02 23:29:36] 2026-02-02 22:29:36,027 [wrapper] ==== pilot stdout END ====
[2026-02-02 23:29:36] 2026-02-02 22:29:36,030 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 23:29:36] 2026-02-02 22:29:36,032 [wrapper] pilotpid: 1119656
[2026-02-02 23:29:36] 2026-02-02 22:29:36,035 [wrapper] Pilot exit status: 0
[2026-02-02 23:29:36] 2026-02-02 22:29:36,042 [wrapper] pandaids: 6992859252
[2026-02-02 23:29:36] 2026-02-02 22:29:36,057 [wrapper] cleanup supervisor_pilot 1129120 1119657
[2026-02-02 23:29:36] 2026-02-02 22:29:36,060 [wrapper] Test setup, not cleaning
[2026-02-02 23:29:36] 2026-02-02 22:29:36,062 [wrapper] apfmon messages muted
[2026-02-02 23:29:36] 2026-02-02 22:29:36,064 [wrapper] ==== wrapper stdout END ====
[2026-02-02 23:29:36] 2026-02-02 22:29:36,066 [wrapper] ==== wrapper stderr END ====
[2026-02-02 23:29:36]  *** Error codes and diagnostics ***
[2026-02-02 23:29:36]     "exeErrorCode": 0,
[2026-02-02 23:29:36]     "exeErrorDiag": "",
[2026-02-02 23:29:36]     "pilotErrorCode": 0,
[2026-02-02 23:29:36]     "pilotErrorDiag": "",
[2026-02-02 23:29:36]  *** Listing of results directory ***
[2026-02-02 23:29:36] total 672940
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc    584422 Feb  1 23:04 pilot3.tar.gz
[2026-02-02 23:29:36] -rwx------ 1 boinc boinc     36322 Feb  1 23:05 runpilot2-wrapper.sh
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc      5111 Feb  1 23:06 queuedata.json
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc       100 Feb  2 22:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 23:29:36] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 22:06 run_atlas
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc       105 Feb  2 22:06 job.xml
[2026-02-02 23:29:36] -rw-r--r-- 2 boinc boinc 497472408 Feb  2 22:06 EVNT.48442027._000003.pool.root.1
[2026-02-02 23:29:36] -rw-r--r-- 2 boinc boinc    597750 Feb  2 22:06 input.tar.gz
[2026-02-02 23:29:36] -rw-r--r-- 2 boinc boinc     15845 Feb  2 22:06 start_atlas.sh
[2026-02-02 23:29:36] drwxrwx--x 2 boinc boinc      4096 Feb  2 22:06 shared
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc         0 Feb  2 22:06 boinc_setup_complete
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc      6439 Feb  2 22:06 init_data.xml
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc         0 Feb  2 22:06 boinc_lockfile
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc      2523 Feb  2 22:06 pandaJob.out
[2026-02-02 23:29:36] -rw------- 1 boinc boinc   1009316 Feb  2 22:06 agis_schedconf.cvmfs.json
[2026-02-02 23:29:36] -rw------- 1 boinc boinc   1511668 Feb  2 22:06 agis_ddmendpoints.agis.ALL.json
[2026-02-02 23:29:36] -rw------- 1 boinc boinc       427 Feb  2 22:06 workernode_map.json
[2026-02-02 23:29:36] drwx------ 5 boinc boinc      4096 Feb  2 22:06 pilot3
[2026-02-02 23:29:36] -rw------- 1 boinc boinc 185723626 Feb  2 23:28 HITS.48442031._000066.pool.root.1
[2026-02-02 23:29:36] -rw------- 1 boinc boinc        95 Feb  2 23:28 pilot_heartbeat.json
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc       530 Feb  2 23:28 boinc_task_state.xml
[2026-02-02 23:29:36] -rw------- 1 boinc boinc      1020 Feb  2 23:28 memory_monitor_summary.json
[2026-02-02 23:29:36] -rw------- 1 boinc boinc    255040 Feb  2 23:29 log.48442031._000066.job.log.tgz.1
[2026-02-02 23:29:36] -rw------- 1 boinc boinc      6299 Feb  2 23:29 heartbeat.json
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc        27 Feb  2 23:29 wrapper_checkpoint.txt
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc      8192 Feb  2 23:29 boinc_mmap_file
[2026-02-02 23:29:36] -rw------- 1 boinc boinc       747 Feb  2 23:29 pilotlog.txt
[2026-02-02 23:29:36] -rw------- 1 boinc boinc    727685 Feb  2 23:29 log.48442031._000066.job.log.1
[2026-02-02 23:29:36] -rw------- 1 boinc boinc       357 Feb  2 23:29 output.list
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc       620 Feb  2 23:29 runtime_log
[2026-02-02 23:29:36] -rw------- 1 boinc boinc   1003520 Feb  2 23:29 result.tar.gz
[2026-02-02 23:29:36] -rw------- 1 boinc boinc       657 Feb  2 23:29 sOkLDm1ku68n9Rq4apOajLDm4fhM0noT9bVooX4SDmwvQKDmg2lNSm.diag
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc      8896 Feb  2 23:29 runtime_log.err
[2026-02-02 23:29:36] -rw-r--r-- 1 boinc boinc     12439 Feb  2 23:29 stderr.txt
[2026-02-02 23:29:36] HITS file was successfully produced:
[2026-02-02 23:29:36] -rw------- 1 boinc boinc 185723626 Feb  2 23:28 shared/HITS.pool.root.1
[2026-02-02 23:29:36]  *** Contents of shared directory: ***
[2026-02-02 23:29:36] total 668772
[2026-02-02 23:29:36] -rw-r--r-- 2 boinc boinc 497472408 Feb  2 22:06 ATLAS.root_0
[2026-02-02 23:29:36] -rw-r--r-- 2 boinc boinc    597750 Feb  2 22:06 input.tar.gz
[2026-02-02 23:29:36] -rw-r--r-- 2 boinc boinc     15845 Feb  2 22:06 start_atlas.sh
[2026-02-02 23:29:36] -rw------- 1 boinc boinc 185723626 Feb  2 23:28 HITS.pool.root.1
[2026-02-02 23:29:36] -rw------- 1 boinc boinc   1003520 Feb  2 23:29 result.tar.gz
23:29:37 (1115620): run_atlas exited; CPU time 14189.324419
23:29:37 (1115620): called boinc_finish(0)

</stderr_txt>
]]>

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