Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:04:35 (2454): wrapper (7.7.26015): starting
06:04:35 (2454): wrapper: running run_atlas (--nthreads 8)
[2026-02-02 06:04:35] Arguments: --nthreads 8
[2026-02-02 06:04:35] Threads: 8
[2026-02-02 06:04:35] Checking for CVMFS
[2026-02-02 06:04:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 06:04:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 06:04:35] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 06:04:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 06:04:35] 2.11.0.0 4414 162988 94956 155774 3 188 3035269 4096000 917 130560 15 18108613 99.723 9849571 515 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-02 06:04:35] CVMFS is ok
[2026-02-02 06:04:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 06:04:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 06:04:35] Further information can be found at the LHC@home message board.
[2026-02-02 06:04:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 06:04:35] Checking for apptainer binary...
[2026-02-02 06:04:35] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-02 06:04:35] apptainer is not installed, using version from CVMFS
[2026-02-02 06:04:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 06:04:35] WARNING: Environment variable TMPDIR already has value [/tmp/job_11072622/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node324
[2026-02-02 06:04:35] apptainer works
[2026-02-02 06:04:35] Set ATHENA_PROC_NUMBER=8
[2026-02-02 06:04:35] Set ATHENA_CORE_NUMBER=8
[2026-02-02 06:04:35] Starting ATLAS job with PandaID=6996177906
[2026-02-02 06:04:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11072622/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 06:53:52]  *** The last 200 lines of the pilot log: ***
[2026-02-02 06:53:52]  is_altstaged=None
[2026-02-02 06:53:52]  is_tar=False
[2026-02-02 06:53:52]  lfn=log.48317872._017841.job.log.tgz.1
[2026-02-02 06:53:52]  mtime=0
[2026-02-02 06:53:52]  protocol_id=None
[2026-02-02 06:53:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-02 06:53:52]  replicas=None
[2026-02-02 06:53:52]  scope=mc23_13p6TeV
[2026-02-02 06:53:52]  status=None
[2026-02-02 06:53:52]  status_code=0
[2026-02-02 06:53:52]  storage_token=
[2026-02-02 06:53:52]  surl=/tmp/job_11072622/atlas/pilot/slots/0/PanDA_Pilot-6996177906/log.48317872._017841.job.log.tgz.1
[2026-02-02 06:53:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/3a/log.48317872._017841.job.log.tgz.1
[2026-02-02 06:53:52]  workdir=None
[2026-02-02 06:53:52] ]
[2026-02-02 06:53:52] 2026-02-02 05:52:46,200 | INFO     | transferring file log.48317872._017841.job.log.tgz.1 from /tmp/job_11072622/atlas/pilot/slots/0/PanDA_Pilot-6996177906/log.48317872._017841.job.log.tgz.1 to /tmp/j
[2026-02-02 06:53:52] 2026-02-02 05:52:46,200 | INFO     | executing command: /usr/bin/env mv /tmp/job_11072622/atlas/pilot/slots/0/PanDA_Pilot-6996177906/log.48317872._017841.job.log.tgz.1 /tmp/job_11072622/atlas/pilot/sl
[2026-02-02 06:53:52] 2026-02-02 05:52:46,211 | INFO     | adding to output.list: log.48317872._017841.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/3a/log.48317872._017841.job.log.tg
[2026-02-02 06:53:52] 2026-02-02 05:52:46,211 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-02 06:53:52] 2026-02-02 05:52:46,211 | INFO     | summary of transferred files:
[2026-02-02 06:53:52] 2026-02-02 05:52:46,211 | INFO     |  -- lfn=log.48317872._017841.job.log.tgz.1, status_code=0, status=transferred
[2026-02-02 06:53:52] 2026-02-02 05:52:46,212 | INFO     | stage-out finished correctly
[2026-02-02 06:53:52] 2026-02-02 05:52:46,905 | INFO     | time since job start (2884s) is within the limit (349056.0s)
[2026-02-02 06:53:52] 2026-02-02 05:52:48,268 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-02 06:53:52] 2026-02-02 05:52:48,911 | INFO     | time since job start (2886s) is within the limit (349056.0s)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,034 | INFO     | job 6996177906 has state=finished
[2026-02-02 06:53:52] 2026-02-02 05:52:50,034 | INFO     | preparing for final server update for job 6996177906 in state='finished'
[2026-02-02 06:53:52] 2026-02-02 05:52:50,034 | INFO     | reading metadata from: /tmp/job_11072622/atlas/pilot/slots/0/PanDA_Pilot-6996177906/jobReport.json
[2026-02-02 06:53:52] 2026-02-02 05:52:50,036 | INFO     | added worker_node to metadata from /tmp/job_11072622/atlas/pilot/slots/0/workernode_map.json
[2026-02-02 06:53:52] 2026-02-02 05:52:50,036 | INFO     | this job has now completed (state=finished)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,036 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,036 | INFO     | log transfer has been attempted: DONE
[2026-02-02 06:53:52] 2026-02-02 05:52:50,036 | INFO     | job 6996177906 has finished - writing final server update
[2026-02-02 06:53:52] 2026-02-02 05:52:50,036 | INFO     | total number of processed events: 400 (read)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,055 | INFO     | using path: /tmp/job_11072622/atlas/pilot/slots/0/PanDA_Pilot-6996177906/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,055 | INFO     | extracted standard info from prmon json
[2026-02-02 06:53:52] 2026-02-02 05:52:50,055 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 06:53:52] 2026-02-02 05:52:50,055 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 06:53:52] 2026-02-02 05:52:50,055 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 06:53:52] 2026-02-02 05:52:50,055 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | fitting pss+swap vs Time
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | sum of square deviations: 19832930.0
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | sum of deviations: 228952276.0
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | mean x: 1770010193.5
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | mean y: 2524533.1
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | intersect: -20430556325.10025
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | chi2: 0.00017474738075936257
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | current memory leak: 11.54 B/s (using 40 data points, chi2=0.00)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | could have reported an average CPU frequency of 2471 MHz (5 samples)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | ..............................
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | . Timing measurements:
[2026-02-02 06:53:52] 2026-02-02 05:52:50,056 | INFO     | . get job = 0 s
[2026-02-02 06:53:52] 2026-02-02 05:52:50,057 | INFO     | . initial setup = 2 s
[2026-02-02 06:53:52] 2026-02-02 05:52:50,057 | INFO     | . payload setup = 2 s
[2026-02-02 06:53:52] 2026-02-02 05:52:50,057 | INFO     | . stage-in = 0 s
[2026-02-02 06:53:52] 2026-02-02 05:52:50,057 | INFO     | . payload execution = 2865 s
[2026-02-02 06:53:52] 2026-02-02 05:52:50,057 | INFO     | . stage-out = 0 s
[2026-02-02 06:53:52] 2026-02-02 05:52:50,057 | INFO     | . log creation = 0 s
[2026-02-02 06:53:52] 2026-02-02 05:52:50,057 | INFO     | ..............................
[2026-02-02 06:53:52] 2026-02-02 05:52:50,303 | WARNING  | process 13340 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 06:53:52] 2026-02-02 05:52:50,303 | INFO     | using path: /tmp/job_11072622/atlas/pilot/slots/0/PanDA_Pilot-6996177906/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,402 | INFO     | number of running child processes to parent process 13340: 1
[2026-02-02 06:53:52] 2026-02-02 05:52:50,402 | INFO     | maximum number of monitored processes: 6
[2026-02-02 06:53:52] 2026-02-02 05:52:50,402 | INFO     | aborting job monitoring since job object (job id=6996177906) has expired
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | 
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | job summary report
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | --------------------------------------------------
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | PanDA job id: 6996177906
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | task id: 48317872
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | errors: (none)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | pilot state: finished 
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | transexitcode: 0
[2026-02-02 06:53:52] 2026-02-02 05:52:50,566 | INFO     | exeerrorcode: 0
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | exeerrordiag: 
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | exitcode: 0
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | exitmsg: OK
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | cpuconsumptiontime: 19453 s
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | nevents: 400
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | neventsw: 0
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | pid: 13340
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | pgrp: 13340
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | corecount: 8
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | event service: False
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | sizes: {0: 2278398, 11: 2278398, 2871: 2303891, 2872: 2312974, 2875: 2312974, 2876: 2313200}
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | --------------------------------------------------
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | 
[2026-02-02 06:53:52] 2026-02-02 05:52:50,567 | INFO     | executing command: ls -lF /tmp/job_11072622/atlas/pilot/slots/0
[2026-02-02 06:53:52] 2026-02-02 05:52:50,578 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | job 6996177906 has completed (purged errors)
[2026-02-02 06:53:52] 2026-02-02 05:52:50,579 | INFO     | overall cleanup function is called
[2026-02-02 06:53:52] 2026-02-02 05:52:51,585 | INFO     | --- collectZombieJob: --- 10, [13340]
[2026-02-02 06:53:52] 2026-02-02 05:52:51,586 | INFO     | zombie collector waiting for pid 13340
[2026-02-02 06:53:52] 2026-02-02 05:52:51,586 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 06:53:52] 2026-02-02 05:52:51,586 | INFO     | collected zombie processes
[2026-02-02 06:53:52] 2026-02-02 05:52:51,586 | INFO     | will attempt to kill all subprocesses of pid=13340
[2026-02-02 06:53:52] 2026-02-02 05:52:51,685 | INFO     | process IDs to be killed: [13340] (in reverse order)
[2026-02-02 06:53:52] 2026-02-02 05:52:51,723 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 06:53:52] 2026-02-02 05:52:51,724 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 06:53:52] 2026-02-02 05:52:51,729 | INFO     | did not find any defunct processes belonging to 13340
[2026-02-02 06:53:52] 2026-02-02 05:52:51,732 | INFO     | did not find any defunct processes belonging to 13340
[2026-02-02 06:53:52] 2026-02-02 05:52:51,733 | INFO     | ready for new job
[2026-02-02 06:53:52] 2026-02-02 05:52:51,733 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 06:53:52] 2026-02-02 05:52:51,733 | INFO     | **************************************
[2026-02-02 06:53:52] 2026-02-02 05:52:51,734 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 06:53:52] 2026-02-02 05:52:51,734 | INFO     | **************************************
[2026-02-02 06:53:52] 2026-02-02 05:52:51,734 | INFO     | 
[2026-02-02 06:53:52] 2026-02-02 05:52:51,748 | INFO     | architecture information:
[2026-02-02 06:53:52] 2026-02-02 05:52:51,748 | INFO     | executing command: cat /etc/os-release
[2026-02-02 06:53:52] 2026-02-02 05:52:51,756 | INFO     | cat /etc/os-release:
[2026-02-02 06:53:52] NAME="CentOS Linux"
[2026-02-02 06:53:52] VERSION="7 (Core)"
[2026-02-02 06:53:52] ID="centos"
[2026-02-02 06:53:52] ID_LIKE="rhel fedora"
[2026-02-02 06:53:52] VERSION_ID="7"
[2026-02-02 06:53:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 06:53:52] ANSI_COLOR="0;31"
[2026-02-02 06:53:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 06:53:52] HOME_URL="https://www.centos.org/"
[2026-02-02 06:53:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 06:53:52] 
[2026-02-02 06:53:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 06:53:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 06:53:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 06:53:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 06:53:52] 
[2026-02-02 06:53:52] 2026-02-02 05:52:51,756 | INFO     | **************************************
[2026-02-02 06:53:52] 2026-02-02 05:52:52,259 | INFO     | executing command: df -mP /tmp/job_11072622/atlas/pilot/slots/0
[2026-02-02 06:53:52] 2026-02-02 05:52:52,268 | INFO     | sufficient remaining disk space (225104101376 B)
[2026-02-02 06:53:52] 2026-02-02 05:52:52,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 06:53:52] 2026-02-02 05:52:52,269 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 06:53:52] 2026-02-02 05:52:52,269 | INFO     | update_server=False
[2026-02-02 06:53:52] 2026-02-02 05:52:52,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 06:53:52] 2026-02-02 05:52:52,269 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 06:53:52] 2026-02-02 05:52:52,269 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 06:53:52] 2026-02-02 05:52:52,269 | INFO     | aborting loop
[2026-02-02 06:53:52] 2026-02-02 05:52:52,716 | INFO     | all payload control threads have been joined
[2026-02-02 06:53:52] 2026-02-02 05:52:52,917 | INFO     | all data control threads have been joined
[2026-02-02 06:53:52] 2026-02-02 05:52:53,274 | INFO     | [job] retrieve thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:53,275 | INFO     | [job] job monitor thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:53,368 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:53,618 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:53,721 | INFO     | [payload] control thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:53,875 | INFO     | all job control threads have been joined
[2026-02-02 06:53:52] 2026-02-02 05:52:53,923 | INFO     | [data] control thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:53,937 | INFO     | [data] copytool_in thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:54,248 | INFO     | [payload] failed_post thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:54,275 | INFO     | [data] copytool_out thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:54,326 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 06:53:52] 2026-02-02 05:52:54,524 | INFO     | [payload] validate_post thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:54,755 | INFO     | [job] validate thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:54,755 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:54,880 | INFO     | [job] control thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:55,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 06:53:52] 2026-02-02 05:52:56,123 | INFO     | [job] queue monitor thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:52:58,332 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:53:02,321 | INFO     | job.realtimelogging is not enabled
[2026-02-02 06:53:52] 2026-02-02 05:53:03,326 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 06:53:52] 2026-02-02 05:53:22,096 | INFO     | PID=7459 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-02 06:53:52] 2026-02-02 05:53:22,096 | INFO     | .. there are 3 such processes running
[2026-02-02 06:53:52] 2026-02-02 05:53:22,096 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 06:53:52] 2026-02-02 05:53:22,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 06:53:52] 2026-02-02 05:53:22,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 06:53:52] 2026-02-02 05:53:46,741 | INFO     | [monitor] cgroup control has ended
[2026-02-02 06:53:52] 2026-02-02 05:53:46,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-02-02 06:53:52] 2026-02-02 05:53:47,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 06:53:52] 2026-02-02 05:53:47,219 | INFO     | [monitor] control thread has ended
[2026-02-02 06:53:52] 2026-02-02 05:53:51,876 | INFO     | all workflow threads have been joined
[2026-02-02 06:53:52] 2026-02-02 05:53:51,876 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 06:53:52] 2026-02-02 05:53:51,876 | INFO     | traces error code: 0
[2026-02-02 06:53:52] 2026-02-02 05:53:51,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 06:53:52] 2026-02-02 05:53:51,938 [wrapper] ==== pilot stdout END ====
[2026-02-02 06:53:52] 2026-02-02 05:53:51,940 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 06:53:52] 2026-02-02 05:53:51,941 [wrapper] pilotpid: 7459
[2026-02-02 06:53:52] 2026-02-02 05:53:51,942 [wrapper] Pilot exit status: 0
[2026-02-02 06:53:52] 2026-02-02 05:53:51,948 [wrapper] pandaids: 6996177906
[2026-02-02 06:53:52] 2026-02-02 05:53:51,973 [wrapper] cleanup supervisor_pilot 28327 7460
[2026-02-02 06:53:52] 2026-02-02 05:53:51,974 [wrapper] Test setup, not cleaning
[2026-02-02 06:53:52] 2026-02-02 05:53:51,976 [wrapper] apfmon messages muted
[2026-02-02 06:53:52] 2026-02-02 05:53:51,977 [wrapper] ==== wrapper stdout END ====
[2026-02-02 06:53:52] 2026-02-02 05:53:51,978 [wrapper] ==== wrapper stderr END ====
[2026-02-02 06:53:52]  *** Error codes and diagnostics ***
[2026-02-02 06:53:52]     "exeErrorCode": 0,
[2026-02-02 06:53:52]     "exeErrorDiag": "",
[2026-02-02 06:53:52]     "pilotErrorCode": 0,
[2026-02-02 06:53:52]     "pilotErrorDiag": "",
[2026-02-02 06:53:52]  *** Listing of results directory ***
[2026-02-02 06:53:52] total 665440
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user    584422 Feb  1 18:33 pilot3.tar.gz
[2026-02-02 06:53:52] -rwx------ 1 mf493845 unix-user     36322 Feb  1 18:37 runpilot2-wrapper.sh
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user      5111 Feb  1 18:41 queuedata.json
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user       100 Feb  2 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 06:53:52] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  2 03:57 run_atlas
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user       105 Feb  2 03:57 job.xml
[2026-02-02 06:53:52] -rw-r--r-- 2 mf493845 unix-user 498390087 Feb  2 06:04 EVNT.48317869._000327.pool.root.1
[2026-02-02 06:53:52] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  2 06:04 start_atlas.sh
[2026-02-02 06:53:52] drwxrwx--x 2 mf493845 unix-user       100 Feb  2 06:04 shared
[2026-02-02 06:53:52] -rw-r--r-- 2 mf493845 unix-user    597755 Feb  2 06:04 input.tar.gz
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user      6390 Feb  2 06:04 init_data.xml
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user         0 Feb  2 06:04 boinc_setup_complete
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user      8192 Feb  2 06:04 boinc_mmap_file
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user         0 Feb  2 06:04 boinc_lockfile
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user      2520 Feb  2 06:04 pandaJob.out
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user   1009823 Feb  2 06:04 agis_schedconf.cvmfs.json
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user   1511668 Feb  2 06:04 agis_ddmendpoints.agis.ALL.json
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user       415 Feb  2 06:04 workernode_map.json
[2026-02-02 06:53:52] drwx------ 5 mf493845 unix-user       440 Feb  2 06:04 pilot3
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user 177545484 Feb  2 06:52 HITS.48317872._017841.pool.root.1
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user      1014 Feb  2 06:52 memory_monitor_summary.json
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user    317849 Feb  2 06:52 log.48317872._017841.job.log.tgz.1
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user      6309 Feb  2 06:52 heartbeat.json
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user        95 Feb  2 06:53 pilot_heartbeat.json
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user      4902 Feb  2 06:53 pilotlog.txt
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user    461263 Feb  2 06:53 log.48317872._017841.job.log.1
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user       357 Feb  2 06:53 output.list
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user       620 Feb  2 06:53 runtime_log
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user    798720 Feb  2 06:53 result.tar.gz
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user      9219 Feb  2 06:53 runtime_log.err
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user       642 Feb  2 06:53 iNKNDm3Yq68n9Rq4apOajLDm4fhM0noT9bVooX4SDmbUQKDm2HsLXn.diag
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user     21988 Feb  2 06:53 stderr.txt
[2026-02-02 06:53:52] HITS file was successfully produced:
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user 177545484 Feb  2 06:52 shared/HITS.pool.root.1
[2026-02-02 06:53:52]  *** Contents of shared directory: ***
[2026-02-02 06:53:52] total 661480
[2026-02-02 06:53:52] -rw-r--r-- 2 mf493845 unix-user 498390087 Feb  2 06:04 ATLAS.root_0
[2026-02-02 06:53:52] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  2 06:04 start_atlas.sh
[2026-02-02 06:53:52] -rw-r--r-- 2 mf493845 unix-user    597755 Feb  2 06:04 input.tar.gz
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user 177545484 Feb  2 06:52 HITS.pool.root.1
[2026-02-02 06:53:52] -rw------- 1 mf493845 unix-user    798720 Feb  2 06:53 result.tar.gz
06:53:54 (2454): run_atlas exited; CPU time 19486.098101
06:53:54 (2454): called boinc_finish(0)

</stderr_txt>
]]>

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