Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:56:22 (3416292): wrapper (7.7.26015): starting
13:56:22 (3416292): wrapper: running run_atlas (--nthreads 3)
[2026-02-02 13:56:22] Arguments: --nthreads 3
[2026-02-02 13:56:22] Threads: 3
[2026-02-02 13:56:22] Checking for CVMFS
[2026-02-02 13:56:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 13:56:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 13:56:23] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 13:56:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 13:56:23] 2.9.2.0 2679616 5156 70004 155787 2 50 18864265 36864001 0 130560 0 2089947 99.984 179718 17767 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 13:56:23] CVMFS is ok
[2026-02-02 13:56:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 13:56:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 13:56:23] Further information can be found at the LHC@home message board.
[2026-02-02 13:56:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 13:56:23] Checking for apptainer binary...
[2026-02-02 13:56:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 13:56:23] Running /usr/bin/apptainer --version
[2026-02-02 13:56:23] apptainer version 1.4.1-1.1
[2026-02-02 13:56:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 13:56:23] magicA244b
[2026-02-02 13:56:23] apptainer works
[2026-02-02 13:56:23] Set ATHENA_PROC_NUMBER=3
[2026-02-02 13:56:23] Set ATHENA_CORE_NUMBER=3
[2026-02-02 13:56:23] Starting ATLAS job with PandaID=6996292036
[2026-02-02 13:56:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 15:34:51]  *** The last 200 lines of the pilot log: ***
[2026-02-02 15:34:51] 2026-02-02 14:34:19,593 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 15:34:51] 2026-02-02 14:34:19,593 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 15:34:51] 2026-02-02 14:34:19,593 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 15:34:51] 2026-02-02 14:34:19,593 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 15:34:51] 2026-02-02 14:34:19,593 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 15:34:51] 2026-02-02 14:34:19,593 | INFO     | job 6996292036 has completed (purged errors)
[2026-02-02 15:34:51] 2026-02-02 14:34:19,593 | INFO     | overall cleanup function is called
[2026-02-02 15:34:51] 2026-02-02 14:34:20,600 | INFO     | --- collectZombieJob: --- 10, [3424763]
[2026-02-02 15:34:51] 2026-02-02 14:34:20,600 | INFO     | zombie collector waiting for pid 3424763
[2026-02-02 15:34:51] 2026-02-02 14:34:20,600 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 15:34:51] 2026-02-02 14:34:20,600 | INFO     | collected zombie processes
[2026-02-02 15:34:51] 2026-02-02 14:34:20,601 | INFO     | will attempt to kill all subprocesses of pid=3424763
[2026-02-02 15:34:51] 2026-02-02 14:34:20,636 | INFO     | process IDs to be killed: [3424763] (in reverse order)
[2026-02-02 15:34:51] 2026-02-02 14:34:20,661 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 15:34:51] 2026-02-02 14:34:20,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 15:34:51] 2026-02-02 14:34:20,662 | INFO     | did not find any defunct processes belonging to 3424763
[2026-02-02 15:34:51] 2026-02-02 14:34:20,663 | INFO     | did not find any defunct processes belonging to 3424763
[2026-02-02 15:34:51] 2026-02-02 14:34:20,663 | INFO     | ready for new job
[2026-02-02 15:34:51] 2026-02-02 14:34:20,663 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 15:34:51] 2026-02-02 14:34:20,664 | INFO     | **************************************
[2026-02-02 15:34:51] 2026-02-02 14:34:20,664 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 15:34:51] 2026-02-02 14:34:20,664 | INFO     | **************************************
[2026-02-02 15:34:51] 2026-02-02 14:34:20,664 | INFO     | 
[2026-02-02 15:34:51] 2026-02-02 14:34:20,664 | INFO     | architecture information:
[2026-02-02 15:34:51] 2026-02-02 14:34:20,664 | INFO     | executing command: cat /etc/os-release
[2026-02-02 15:34:51] 2026-02-02 14:34:20,674 | INFO     | cat /etc/os-release:
[2026-02-02 15:34:51] NAME="CentOS Linux"
[2026-02-02 15:34:51] VERSION="7 (Core)"
[2026-02-02 15:34:51] ID="centos"
[2026-02-02 15:34:51] ID_LIKE="rhel fedora"
[2026-02-02 15:34:51] VERSION_ID="7"
[2026-02-02 15:34:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 15:34:51] ANSI_COLOR="0;31"
[2026-02-02 15:34:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 15:34:51] HOME_URL="https://www.centos.org/"
[2026-02-02 15:34:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 15:34:51] 
[2026-02-02 15:34:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 15:34:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 15:34:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 15:34:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 15:34:51] 
[2026-02-02 15:34:51] 2026-02-02 14:34:20,674 | INFO     | **************************************
[2026-02-02 15:34:51] 2026-02-02 14:34:21,177 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | INFO     | sufficient remaining disk space (338126962688 B)
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | INFO     | update_server=False
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 15:34:51] 2026-02-02 14:34:21,191 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 15:34:51] 2026-02-02 14:34:21,344 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-02 15:34:51] 2026-02-02 14:34:21,345 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-02 15:34:51] 2026-02-02 14:34:21,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 15:34:51] 2026-02-02 14:34:21,345 | INFO     | will abort loop
[2026-02-02 15:34:51] 2026-02-02 14:34:21,862 | INFO     | all data control threads have been joined
[2026-02-02 15:34:51] 2026-02-02 14:34:22,196 | INFO     | [job] retrieve thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:22,197 | INFO     | [job] queue monitor thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:22,198 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:22,351 | INFO     | [job] job monitor thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:22,364 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:22,506 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:22,558 | INFO     | [job] validate thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:22,581 | INFO     | all payload control threads have been joined
[2026-02-02 15:34:51] 2026-02-02 14:34:22,595 | INFO     | all job control threads have been joined
[2026-02-02 15:34:51] 2026-02-02 14:34:22,693 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 15:34:51] 2026-02-02 14:34:22,729 | INFO     | [payload] validate_post thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:22,830 | INFO     | [data] copytool_in thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:22,868 | INFO     | [data] control thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:23,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 15:34:51] 2026-02-02 14:34:23,363 | INFO     | [payload] failed_post thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:23,586 | INFO     | [payload] control thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:23,600 | INFO     | [job] control thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:24,699 | INFO     | [data] copytool_out thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:27,285 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:32,139 | INFO     | job.realtimelogging is not enabled
[2026-02-02 15:34:51] 2026-02-02 14:34:33,144 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 15:34:51] 2026-02-02 14:34:44,992 | INFO     | [monitor] cgroup control has ended
[2026-02-02 15:34:51] 2026-02-02 14:34:46,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705822111552)>', '<ExcThread(monitor, started 140705158633216)>']
[2026-02-02 15:34:51] 2026-02-02 14:34:47,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 15:34:51] 2026-02-02 14:34:47,329 | INFO     | [monitor] control thread has ended
[2026-02-02 15:34:51] 2026-02-02 14:34:51,775 | INFO     | all workflow threads have been joined
[2026-02-02 15:34:51] 2026-02-02 14:34:51,775 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 15:34:51] 2026-02-02 14:34:51,776 | INFO     | traces error code: 0
[2026-02-02 15:34:51] 2026-02-02 14:34:51,776 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 15:34:51] 2026-02-02 14:34:51,822 [wrapper] ==== pilot stdout END ====
[2026-02-02 15:34:51] 2026-02-02 14:34:51,825 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 15:34:51] 2026-02-02 14:34:51,827 [wrapper] pilotpid: 3420336
[2026-02-02 15:34:51] 2026-02-02 14:34:51,829 [wrapper] Pilot exit status: 0
[2026-02-02 15:34:51] 2026-02-02 14:34:51,837 [wrapper] pandaids: 6996292036
[2026-02-02 15:34:51] 2026-02-02 14:34:51,853 [wrapper] cleanup supervisor_pilot 3431082 3420337
[2026-02-02 15:34:51] 2026-02-02 14:34:51,856 [wrapper] Test setup, not cleaning
[2026-02-02 15:34:51] 2026-02-02 14:34:51,859 [wrapper] apfmon messages muted
[2026-02-02 15:34:51] 2026-02-02 14:34:51,861 [wrapper] ==== wrapper stdout END ====
[2026-02-02 15:34:51] 2026-02-02 14:34:51,864 [wrapper] ==== wrapper stderr END ====
[2026-02-02 15:34:51]  *** Error codes and diagnostics ***
[2026-02-02 15:34:51]     "exeErrorCode": 0,
[2026-02-02 15:34:51]     "exeErrorDiag": "",
[2026-02-02 15:34:51]     "pilotErrorCode": 0,
[2026-02-02 15:34:51]     "pilotErrorDiag": "",
[2026-02-02 15:34:51]  *** Listing of results directory ***
[2026-02-02 15:34:51] total 674840
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc    584422 Feb  1 20:04 pilot3.tar.gz
[2026-02-02 15:34:51] -rwx------ 1 boinc boinc     36322 Feb  1 20:05 runpilot2-wrapper.sh
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc      5111 Feb  1 20:07 queuedata.json
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc       100 Feb  2 13:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 15:34:51] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 13:56 run_atlas
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc       105 Feb  2 13:56 job.xml
[2026-02-02 15:34:51] -rw-r--r-- 2 boinc boinc 497545852 Feb  2 13:56 EVNT.48317889._000140.pool.root.1
[2026-02-02 15:34:51] -rw-r--r-- 2 boinc boinc    597763 Feb  2 13:56 input.tar.gz
[2026-02-02 15:34:51] -rw-r--r-- 2 boinc boinc     15845 Feb  2 13:56 start_atlas.sh
[2026-02-02 15:34:51] drwxrwx--x 2 boinc boinc      4096 Feb  2 13:56 shared
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc         0 Feb  2 13:56 boinc_setup_complete
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc      6199 Feb  2 13:56 init_data.xml
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc         0 Feb  2 13:56 boinc_lockfile
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc      2521 Feb  2 13:56 pandaJob.out
[2026-02-02 15:34:51] -rw------- 1 boinc boinc   1008375 Feb  2 13:56 agis_schedconf.cvmfs.json
[2026-02-02 15:34:51] -rw------- 1 boinc boinc   1511668 Feb  2 13:56 agis_ddmendpoints.agis.ALL.json
[2026-02-02 15:34:51] -rw------- 1 boinc boinc       430 Feb  2 13:56 workernode_map.json
[2026-02-02 15:34:51] drwx------ 5 boinc boinc      4096 Feb  2 13:56 pilot3
[2026-02-02 15:34:51] -rw------- 1 boinc boinc 187242534 Feb  2 15:33 HITS.48317892._007356.pool.root.1
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc       530 Feb  2 15:33 boinc_task_state.xml
[2026-02-02 15:34:51] -rw------- 1 boinc boinc        95 Feb  2 15:34 pilot_heartbeat.json
[2026-02-02 15:34:51] -rw------- 1 boinc boinc      1021 Feb  2 15:34 memory_monitor_summary.json
[2026-02-02 15:34:51] -rw------- 1 boinc boinc    306178 Feb  2 15:34 log.48317892._007356.job.log.tgz.1
[2026-02-02 15:34:51] -rw------- 1 boinc boinc      6322 Feb  2 15:34 heartbeat.json
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc        27 Feb  2 15:34 wrapper_checkpoint.txt
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc      8192 Feb  2 15:34 boinc_mmap_file
[2026-02-02 15:34:51] -rw------- 1 boinc boinc      4810 Feb  2 15:34 pilotlog.txt
[2026-02-02 15:34:51] -rw------- 1 boinc boinc    851025 Feb  2 15:34 log.48317892._007356.job.log.1
[2026-02-02 15:34:51] -rw------- 1 boinc boinc       357 Feb  2 15:34 output.list
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc       620 Feb  2 15:34 runtime_log
[2026-02-02 15:34:51] -rw------- 1 boinc boinc   1177600 Feb  2 15:34 result.tar.gz
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc      8916 Feb  2 15:34 runtime_log.err
[2026-02-02 15:34:51] -rw------- 1 boinc boinc       661 Feb  2 15:34 8eLODmawr68n9Rq4apOajLDm4fhM0noT9bVooX4SDmqiQKDm5szaNm.diag
[2026-02-02 15:34:51] -rw-r--r-- 1 boinc boinc     11563 Feb  2 15:34 stderr.txt
[2026-02-02 15:34:51] HITS file was successfully produced:
[2026-02-02 15:34:51] -rw------- 1 boinc boinc 187242534 Feb  2 15:33 shared/HITS.pool.root.1
[2026-02-02 15:34:51]  *** Contents of shared directory: ***
[2026-02-02 15:34:51] total 670504
[2026-02-02 15:34:51] -rw-r--r-- 2 boinc boinc 497545852 Feb  2 13:56 ATLAS.root_0
[2026-02-02 15:34:51] -rw-r--r-- 2 boinc boinc    597763 Feb  2 13:56 input.tar.gz
[2026-02-02 15:34:51] -rw-r--r-- 2 boinc boinc     15845 Feb  2 13:56 start_atlas.sh
[2026-02-02 15:34:51] -rw------- 1 boinc boinc 187242534 Feb  2 15:33 HITS.pool.root.1
[2026-02-02 15:34:51] -rw------- 1 boinc boinc   1177600 Feb  2 15:34 result.tar.gz
15:34:53 (3416292): run_atlas exited; CPU time 16825.780194
15:34:53 (3416292): called boinc_finish(0)

</stderr_txt>
]]>

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