Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:58:02 (2468407): wrapper (7.7.26015): starting
09:58:02 (2468407): wrapper: running run_atlas (--nthreads 3)
[2026-02-02 09:58:02] Arguments: --nthreads 3
[2026-02-02 09:58:02] Threads: 3
[2026-02-02 09:58:02] Checking for CVMFS
[2026-02-02 09:58:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 09:58:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 09:58:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 09:58:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 09:58:04] 2.9.2.0 1381994 6796 86268 155780 1 50 26087111 36864000 0 130560 0 3119940 99.986 220540 17377 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 09:58:04] CVMFS is ok
[2026-02-02 09:58:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 09:58:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 09:58:04] Further information can be found at the LHC@home message board.
[2026-02-02 09:58:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 09:58:04] Checking for apptainer binary...
[2026-02-02 09:58:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 09:58:04] Running /usr/bin/apptainer --version
[2026-02-02 09:58:04] apptainer version 1.4.1-1.1
[2026-02-02 09:58:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 09:58:04] magicA161a
[2026-02-02 09:58:04] apptainer works
[2026-02-02 09:58:04] Set ATHENA_PROC_NUMBER=3
[2026-02-02 09:58:04] Set ATHENA_CORE_NUMBER=3
[2026-02-02 09:58:04] Starting ATLAS job with PandaID=6992473182
[2026-02-02 09:58:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 11:19:30]  *** The last 200 lines of the pilot log: ***
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | job 6992473182 has completed (purged errors)
[2026-02-02 11:19:30] 2026-02-02 10:18:58,257 | INFO     | overall cleanup function is called
[2026-02-02 11:19:30] 2026-02-02 10:18:59,260 | INFO     | --- collectZombieJob: --- 10, [2476863]
[2026-02-02 11:19:30] 2026-02-02 10:18:59,260 | INFO     | zombie collector waiting for pid 2476863
[2026-02-02 11:19:30] 2026-02-02 10:18:59,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 11:19:30] 2026-02-02 10:18:59,260 | INFO     | collected zombie processes
[2026-02-02 11:19:30] 2026-02-02 10:18:59,260 | INFO     | will attempt to kill all subprocesses of pid=2476863
[2026-02-02 11:19:30] 2026-02-02 10:18:59,302 | INFO     | process IDs to be killed: [2476863] (in reverse order)
[2026-02-02 11:19:30] 2026-02-02 10:18:59,325 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 11:19:30] 2026-02-02 10:18:59,326 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 11:19:30] 2026-02-02 10:18:59,327 | INFO     | did not find any defunct processes belonging to 2476863
[2026-02-02 11:19:30] 2026-02-02 10:18:59,328 | INFO     | did not find any defunct processes belonging to 2476863
[2026-02-02 11:19:30] 2026-02-02 10:18:59,328 | INFO     | ready for new job
[2026-02-02 11:19:30] 2026-02-02 10:18:59,328 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 11:19:30] 2026-02-02 10:18:59,329 | INFO     | **************************************
[2026-02-02 11:19:30] 2026-02-02 10:18:59,329 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 11:19:30] 2026-02-02 10:18:59,329 | INFO     | **************************************
[2026-02-02 11:19:30] 2026-02-02 10:18:59,329 | INFO     | 
[2026-02-02 11:19:30] 2026-02-02 10:18:59,330 | INFO     | architecture information:
[2026-02-02 11:19:30] 2026-02-02 10:18:59,330 | INFO     | executing command: cat /etc/os-release
[2026-02-02 11:19:30] 2026-02-02 10:18:59,338 | INFO     | cat /etc/os-release:
[2026-02-02 11:19:30] NAME="CentOS Linux"
[2026-02-02 11:19:30] VERSION="7 (Core)"
[2026-02-02 11:19:30] ID="centos"
[2026-02-02 11:19:30] ID_LIKE="rhel fedora"
[2026-02-02 11:19:30] VERSION_ID="7"
[2026-02-02 11:19:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 11:19:30] ANSI_COLOR="0;31"
[2026-02-02 11:19:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 11:19:30] HOME_URL="https://www.centos.org/"
[2026-02-02 11:19:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 11:19:30] 
[2026-02-02 11:19:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 11:19:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 11:19:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 11:19:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 11:19:30] 
[2026-02-02 11:19:30] 2026-02-02 10:18:59,338 | INFO     | **************************************
[2026-02-02 11:19:30] 2026-02-02 10:18:59,841 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 11:19:30] 2026-02-02 10:18:59,854 | INFO     | sufficient remaining disk space (376356995072 B)
[2026-02-02 11:19:30] 2026-02-02 10:18:59,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 11:19:30] 2026-02-02 10:18:59,854 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 11:19:30] 2026-02-02 10:18:59,854 | INFO     | update_server=False
[2026-02-02 11:19:30] 2026-02-02 10:18:59,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 11:19:30] 2026-02-02 10:18:59,854 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 11:19:30] 2026-02-02 10:18:59,854 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 11:19:30] 2026-02-02 10:18:59,854 | INFO     | aborting loop
[2026-02-02 11:19:30] 2026-02-02 10:18:59,893 | INFO     | all payload control threads have been joined
[2026-02-02 11:19:30] 2026-02-02 10:19:00,320 | INFO     | all data control threads have been joined
[2026-02-02 11:19:30] 2026-02-02 10:19:00,366 | INFO     | all job control threads have been joined
[2026-02-02 11:19:30] 2026-02-02 10:19:00,860 | INFO     | [job] retrieve thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:00,860 | INFO     | [job] queue monitor thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:00,860 | INFO     | [job] job monitor thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:00,897 | INFO     | [payload] control thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:01,046 | INFO     | [data] copytool_in thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:01,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 11:19:30] 2026-02-02 10:19:01,324 | INFO     | [data] control thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:01,372 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:01,372 | INFO     | [job] control thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:01,902 | INFO     | [payload] validate_post thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:02,104 | INFO     | [payload] failed_post thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:02,308 | INFO     | [job] validate thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:02,336 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:02,354 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:02,505 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 11:19:30] 2026-02-02 10:19:03,193 | INFO     | [data] copytool_out thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:06,513 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:10,197 | INFO     | job.realtimelogging is not enabled
[2026-02-02 11:19:30] 2026-02-02 10:19:11,203 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 11:19:30] 2026-02-02 10:19:19,423 | INFO     | [monitor] cgroup control has ended
[2026-02-02 11:19:30] 2026-02-02 10:19:19,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140181391599424)>', '<ExcThread(monitor, started 140181038405376)>']
[2026-02-02 11:19:30] 2026-02-02 10:19:24,876 | INFO     | all workflow threads have been joined
[2026-02-02 11:19:30] 2026-02-02 10:19:24,876 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 11:19:30] 2026-02-02 10:19:24,876 | INFO     | traces error code: 0
[2026-02-02 11:19:30] 2026-02-02 10:19:24,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 11:19:30] 2026-02-02 10:19:30,817 | INFO     | PID=2472445 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 11:19:30] 2026-02-02 10:19:30,817 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 11:19:30] 2026-02-02 10:19:30,817 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 11:19:30] 2026-02-02 10:19:30,817 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 11:19:30] 2026-02-02 10:19:30,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 11:19:30] 2026-02-02 10:19:30,817 | INFO     | [monitor] control thread has ended
[2026-02-02 11:19:30] 2026-02-02 10:19:30,864 [wrapper] ==== pilot stdout END ====
[2026-02-02 11:19:30] 2026-02-02 10:19:30,866 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 11:19:30] 2026-02-02 10:19:30,869 [wrapper] pilotpid: 2472445
[2026-02-02 11:19:30] 2026-02-02 10:19:30,871 [wrapper] Pilot exit status: 0
[2026-02-02 11:19:30] 2026-02-02 10:19:30,878 [wrapper] pandaids: 6992473182
[2026-02-02 11:19:30] 2026-02-02 10:19:30,893 [wrapper] cleanup supervisor_pilot 2482066 2472446
[2026-02-02 11:19:30] 2026-02-02 10:19:30,896 [wrapper] Test setup, not cleaning
[2026-02-02 11:19:30] 2026-02-02 10:19:30,898 [wrapper] apfmon messages muted
[2026-02-02 11:19:30] 2026-02-02 10:19:30,900 [wrapper] ==== wrapper stdout END ====
[2026-02-02 11:19:30] 2026-02-02 10:19:30,903 [wrapper] ==== wrapper stderr END ====
[2026-02-02 11:19:30]  *** Error codes and diagnostics ***
[2026-02-02 11:19:30]     "exeErrorCode": 0,
[2026-02-02 11:19:30]     "exeErrorDiag": "",
[2026-02-02 11:19:30]     "pilotErrorCode": 0,
[2026-02-02 11:19:30]     "pilotErrorDiag": "",
[2026-02-02 11:19:30]  *** Listing of results directory ***
[2026-02-02 11:19:30] total 664552
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc    584422 Feb  1 18:33 pilot3.tar.gz
[2026-02-02 11:19:30] -rwx------ 1 boinc boinc     36322 Feb  1 18:34 runpilot2-wrapper.sh
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc      5111 Feb  1 18:35 queuedata.json
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc       100 Feb  2 09:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 11:19:30] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 09:58 run_atlas
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc       105 Feb  2 09:58 job.xml
[2026-02-02 11:19:30] -rw-r--r-- 2 boinc boinc 491595353 Feb  2 09:58 EVNT.48318032._000082.pool.root.1
[2026-02-02 11:19:30] -rw-r--r-- 2 boinc boinc    597768 Feb  2 09:58 input.tar.gz
[2026-02-02 11:19:30] -rw-r--r-- 2 boinc boinc     15845 Feb  2 09:58 start_atlas.sh
[2026-02-02 11:19:30] drwxrwx--x 2 boinc boinc      4096 Feb  2 09:58 shared
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc         0 Feb  2 09:58 boinc_setup_complete
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc      6448 Feb  2 09:58 init_data.xml
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc         0 Feb  2 09:58 boinc_lockfile
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc      2534 Feb  2 09:58 pandaJob.out
[2026-02-02 11:19:30] -rw------- 1 boinc boinc   1008375 Feb  2 09:58 agis_schedconf.cvmfs.json
[2026-02-02 11:19:30] -rw------- 1 boinc boinc   1511668 Feb  2 09:58 agis_ddmendpoints.agis.ALL.json
[2026-02-02 11:19:30] -rw------- 1 boinc boinc       426 Feb  2 09:58 workernode_map.json
[2026-02-02 11:19:30] drwx------ 5 boinc boinc      4096 Feb  2 09:58 pilot3
[2026-02-02 11:19:30] -rw------- 1 boinc boinc        95 Feb  2 11:18 pilot_heartbeat.json
[2026-02-02 11:19:30] -rw------- 1 boinc boinc 183071014 Feb  2 11:18 HITS.48318034._004428.pool.root.1
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc       530 Feb  2 11:18 boinc_task_state.xml
[2026-02-02 11:19:30] -rw------- 1 boinc boinc      1028 Feb  2 11:18 memory_monitor_summary.json
[2026-02-02 11:19:30] -rw------- 1 boinc boinc    240267 Feb  2 11:18 log.48318034._004428.job.log.tgz.1
[2026-02-02 11:19:30] -rw------- 1 boinc boinc      6304 Feb  2 11:18 heartbeat.json
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc      8192 Feb  2 11:19 boinc_mmap_file
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc        27 Feb  2 11:19 wrapper_checkpoint.txt
[2026-02-02 11:19:30] -rw------- 1 boinc boinc       747 Feb  2 11:19 pilotlog.txt
[2026-02-02 11:19:30] -rw------- 1 boinc boinc    711450 Feb  2 11:19 log.48318034._004428.job.log.1
[2026-02-02 11:19:30] -rw------- 1 boinc boinc       357 Feb  2 11:19 output.list
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc       620 Feb  2 11:19 runtime_log
[2026-02-02 11:19:30] -rw------- 1 boinc boinc    972800 Feb  2 11:19 result.tar.gz
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc      8916 Feb  2 11:19 runtime_log.err
[2026-02-02 11:19:30] -rw------- 1 boinc boinc       661 Feb  2 11:19 Ud9LDmdWq68n9Rq4apOajLDm4fhM0noT9bVooX4SDmQRQKDmLyB3Oo.diag
[2026-02-02 11:19:30] -rw-r--r-- 1 boinc boinc     12236 Feb  2 11:19 stderr.txt
[2026-02-02 11:19:30] HITS file was successfully produced:
[2026-02-02 11:19:30] -rw------- 1 boinc boinc 183071014 Feb  2 11:18 shared/HITS.pool.root.1
[2026-02-02 11:19:30]  *** Contents of shared directory: ***
[2026-02-02 11:19:30] total 660420
[2026-02-02 11:19:30] -rw-r--r-- 2 boinc boinc 491595353 Feb  2 09:58 ATLAS.root_0
[2026-02-02 11:19:30] -rw-r--r-- 2 boinc boinc    597768 Feb  2 09:58 input.tar.gz
[2026-02-02 11:19:30] -rw-r--r-- 2 boinc boinc     15845 Feb  2 09:58 start_atlas.sh
[2026-02-02 11:19:30] -rw------- 1 boinc boinc 183071014 Feb  2 11:18 HITS.pool.root.1
[2026-02-02 11:19:30] -rw------- 1 boinc boinc    972800 Feb  2 11:19 result.tar.gz
11:19:32 (2468407): run_atlas exited; CPU time 13888.027950
11:19:32 (2468407): called boinc_finish(0)

</stderr_txt>
]]>

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