Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:16:10 (2256447): wrapper (7.7.26015): starting
07:16:10 (2256447): wrapper: running run_atlas (--nthreads 2)
[2026-02-02 07:16:10] Arguments: --nthreads 2
[2026-02-02 07:16:10] Threads: 2
[2026-02-02 07:16:10] Checking for CVMFS
[2026-02-02 07:16:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 07:16:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 07:16:10] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 07:16:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 07:16:10] 2.9.2.0 1581152 6634 62052 155776 0 50 22046936 36864000 0 130560 0 1997602 99.980 216986 16096 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 07:16:10] CVMFS is ok
[2026-02-02 07:16:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 07:16:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 07:16:10] Further information can be found at the LHC@home message board.
[2026-02-02 07:16:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 07:16:10] Checking for apptainer binary...
[2026-02-02 07:16:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 07:16:10] Running /usr/bin/apptainer --version
[2026-02-02 07:16:10] apptainer version 1.4.1-1.1
[2026-02-02 07:16:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 07:16:10] thA314b
[2026-02-02 07:16:10] apptainer works
[2026-02-02 07:16:10] Set ATHENA_PROC_NUMBER=2
[2026-02-02 07:16:10] Set ATHENA_CORE_NUMBER=2
[2026-02-02 07:16:10] Starting ATLAS job with PandaID=6981241199
[2026-02-02 07:16:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 09:22:46]  *** The last 200 lines of the pilot log: ***
[2026-02-02 09:22:46] 2026-02-02 08:21:44,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 09:22:46] 2026-02-02 08:21:44,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 09:22:46] 2026-02-02 08:21:44,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 09:22:46] 2026-02-02 08:21:44,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 09:22:46] 2026-02-02 08:21:44,667 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 09:22:46] 2026-02-02 08:21:44,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 09:22:46] 2026-02-02 08:21:44,667 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 09:22:46] 2026-02-02 08:21:44,667 | INFO     | job 6981241199 has completed (purged errors)
[2026-02-02 09:22:46] 2026-02-02 08:21:44,667 | INFO     | overall cleanup function is called
[2026-02-02 09:22:46] 2026-02-02 08:21:45,020 | INFO     | PID=2260477 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 09:22:46] 2026-02-02 08:21:45,673 | INFO     | --- collectZombieJob: --- 10, [2264885]
[2026-02-02 09:22:46] 2026-02-02 08:21:45,673 | INFO     | zombie collector waiting for pid 2264885
[2026-02-02 09:22:46] 2026-02-02 08:21:45,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 09:22:46] 2026-02-02 08:21:45,673 | INFO     | collected zombie processes
[2026-02-02 09:22:46] 2026-02-02 08:21:45,673 | INFO     | will attempt to kill all subprocesses of pid=2264885
[2026-02-02 09:22:46] 2026-02-02 08:21:45,705 | INFO     | process IDs to be killed: [2264885] (in reverse order)
[2026-02-02 09:22:46] 2026-02-02 08:21:45,721 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 09:22:46] 2026-02-02 08:21:45,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 09:22:46] 2026-02-02 08:21:45,721 | INFO     | did not find any defunct processes belonging to 2264885
[2026-02-02 09:22:46] 2026-02-02 08:21:45,722 | INFO     | did not find any defunct processes belonging to 2264885
[2026-02-02 09:22:46] 2026-02-02 08:21:45,722 | INFO     | ready for new job
[2026-02-02 09:22:46] 2026-02-02 08:21:45,722 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 09:22:46] 2026-02-02 08:21:45,723 | INFO     | **************************************
[2026-02-02 09:22:46] 2026-02-02 08:21:45,723 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 09:22:46] 2026-02-02 08:21:45,723 | INFO     | **************************************
[2026-02-02 09:22:46] 2026-02-02 08:21:45,723 | INFO     | 
[2026-02-02 09:22:46] 2026-02-02 08:21:45,723 | INFO     | architecture information:
[2026-02-02 09:22:46] 2026-02-02 08:21:45,723 | INFO     | executing command: cat /etc/os-release
[2026-02-02 09:22:46] 2026-02-02 08:21:45,734 | INFO     | cat /etc/os-release:
[2026-02-02 09:22:46] NAME="CentOS Linux"
[2026-02-02 09:22:46] VERSION="7 (Core)"
[2026-02-02 09:22:46] ID="centos"
[2026-02-02 09:22:46] ID_LIKE="rhel fedora"
[2026-02-02 09:22:46] VERSION_ID="7"
[2026-02-02 09:22:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 09:22:46] ANSI_COLOR="0;31"
[2026-02-02 09:22:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 09:22:46] HOME_URL="https://www.centos.org/"
[2026-02-02 09:22:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 09:22:46] 
[2026-02-02 09:22:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 09:22:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 09:22:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 09:22:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 09:22:46] 
[2026-02-02 09:22:46] 2026-02-02 08:21:45,734 | INFO     | **************************************
[2026-02-02 09:22:46] 2026-02-02 08:21:46,237 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 09:22:46] 2026-02-02 08:21:46,250 | INFO     | sufficient remaining disk space (500358447104 B)
[2026-02-02 09:22:46] 2026-02-02 08:21:46,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 09:22:46] 2026-02-02 08:21:46,250 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 09:22:46] 2026-02-02 08:21:46,250 | INFO     | update_server=False
[2026-02-02 09:22:46] 2026-02-02 08:21:46,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 09:22:46] 2026-02-02 08:21:46,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 09:22:46] 2026-02-02 08:21:46,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 09:22:46] 2026-02-02 08:21:46,270 | INFO     | all data control threads have been joined
[2026-02-02 09:22:46] 2026-02-02 08:21:46,313 | WARNING  | process 2264885 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 09:22:46] 2026-02-02 08:21:46,334 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 09:22:46] 2026-02-02 08:21:46,360 | INFO     | number of running child processes to parent process 2264885: 1
[2026-02-02 09:22:46] 2026-02-02 08:21:46,360 | INFO     | maximum number of monitored processes: 6
[2026-02-02 09:22:46] 2026-02-02 08:21:46,360 | INFO     | aborting job monitoring since job object (job id=6981241199) has expired
[2026-02-02 09:22:46] 2026-02-02 08:21:46,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 09:22:46] 2026-02-02 08:21:46,360 | INFO     | will abort loop
[2026-02-02 09:22:46] 2026-02-02 08:21:47,148 | INFO     | all payload control threads have been joined
[2026-02-02 09:22:46] 2026-02-02 08:21:47,226 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 09:22:46] 2026-02-02 08:21:47,256 | INFO     | [job] queue monitor thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:47,256 | INFO     | [job] retrieve thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:47,263 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:47,264 | INFO     | [data] copytool_in thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:47,276 | INFO     | [data] control thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:47,366 | INFO     | [job] job monitor thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:47,378 | INFO     | all job control threads have been joined
[2026-02-02 09:22:46] 2026-02-02 08:21:47,734 | INFO     | [payload] failed_post thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:48,154 | INFO     | [payload] control thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:48,384 | INFO     | [job] control thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:48,412 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:48,460 | INFO     | [job] validate thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:48,491 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:48,842 | INFO     | [payload] validate_post thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:49,232 | INFO     | [data] copytool_out thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:50,257 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:21:56,535 | INFO     | job.realtimelogging is not enabled
[2026-02-02 09:22:46] 2026-02-02 08:21:57,541 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 09:22:46] 2026-02-02 08:22:17,128 | INFO     | PID=2260477 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 09:22:46] 2026-02-02 08:22:17,128 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 09:22:46] 2026-02-02 08:22:17,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 09:22:46] 2026-02-02 08:22:17,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 09:22:46] 2026-02-02 08:22:41,647 | INFO     | [monitor] cgroup control has ended
[2026-02-02 09:22:46] 2026-02-02 08:22:41,649 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687183456064)>', '<ExcThread(monitor, started 139686513186560)>']
[2026-02-02 09:22:46] 2026-02-02 08:22:42,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 09:22:46] 2026-02-02 08:22:42,261 | INFO     | [monitor] control thread has ended
[2026-02-02 09:22:46] 2026-02-02 08:22:46,674 | INFO     | all workflow threads have been joined
[2026-02-02 09:22:46] 2026-02-02 08:22:46,676 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 09:22:46] 2026-02-02 08:22:46,676 | INFO     | traces error code: 0
[2026-02-02 09:22:46] 2026-02-02 08:22:46,676 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 09:22:46] 2026-02-02 08:22:46,719 [wrapper] ==== pilot stdout END ====
[2026-02-02 09:22:46] 2026-02-02 08:22:46,721 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 09:22:46] 2026-02-02 08:22:46,724 [wrapper] pilotpid: 2260477
[2026-02-02 09:22:46] 2026-02-02 08:22:46,726 [wrapper] Pilot exit status: 0
[2026-02-02 09:22:46] 2026-02-02 08:22:46,731 [wrapper] pandaids: 6981241199
[2026-02-02 09:22:46] 2026-02-02 08:22:46,743 [wrapper] cleanup supervisor_pilot 2270788 2260478
[2026-02-02 09:22:46] 2026-02-02 08:22:46,745 [wrapper] Test setup, not cleaning
[2026-02-02 09:22:46] 2026-02-02 08:22:46,747 [wrapper] apfmon messages muted
[2026-02-02 09:22:46] 2026-02-02 08:22:46,749 [wrapper] ==== wrapper stdout END ====
[2026-02-02 09:22:46] 2026-02-02 08:22:46,751 [wrapper] ==== wrapper stderr END ====
[2026-02-02 09:22:46]  *** Error codes and diagnostics ***
[2026-02-02 09:22:46]     "exeErrorCode": 0,
[2026-02-02 09:22:46]     "exeErrorDiag": "",
[2026-02-02 09:22:46]     "pilotErrorCode": 0,
[2026-02-02 09:22:46]     "pilotErrorDiag": "",
[2026-02-02 09:22:46]  *** Listing of results directory ***
[2026-02-02 09:22:46] total 730128
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc    584422 Jan 24 15:28 pilot3.tar.gz
[2026-02-02 09:22:46] -rwx------ 1 boinc boinc     36322 Jan 24 15:30 runpilot2-wrapper.sh
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc      5111 Jan 24 15:31 queuedata.json
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc       100 Feb  2 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 09:22:46] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 07:16 run_atlas
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc       105 Feb  2 07:16 job.xml
[2026-02-02 09:22:46] -rw-r--r-- 2 boinc boinc 544673756 Feb  2 07:16 EVNT.48310836._000020.pool.root.1
[2026-02-02 09:22:46] -rw-r--r-- 2 boinc boinc    597750 Feb  2 07:16 input.tar.gz
[2026-02-02 09:22:46] -rw-r--r-- 2 boinc boinc     15845 Feb  2 07:16 start_atlas.sh
[2026-02-02 09:22:46] drwxrwx--x 2 boinc boinc      4096 Feb  2 07:16 shared
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc         0 Feb  2 07:16 boinc_setup_complete
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc      6207 Feb  2 07:16 init_data.xml
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc         0 Feb  2 07:16 boinc_lockfile
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc      2498 Feb  2 07:16 pandaJob.out
[2026-02-02 09:22:46] -rw------- 1 boinc boinc   1009823 Feb  2 07:16 agis_schedconf.cvmfs.json
[2026-02-02 09:22:46] -rw------- 1 boinc boinc   1511668 Feb  2 07:16 agis_ddmendpoints.agis.ALL.json
[2026-02-02 09:22:46] -rw------- 1 boinc boinc       419 Feb  2 07:16 workernode_map.json
[2026-02-02 09:22:46] drwx------ 5 boinc boinc      4096 Feb  2 07:16 pilot3
[2026-02-02 09:22:46] -rw------- 1 boinc boinc 196310069 Feb  2 09:21 HITS.48310840._000875.pool.root.1
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc       530 Feb  2 09:21 boinc_task_state.xml
[2026-02-02 09:22:46] -rw------- 1 boinc boinc      1014 Feb  2 09:21 memory_monitor_summary.json
[2026-02-02 09:22:46] -rw------- 1 boinc boinc    288255 Feb  2 09:21 log.48310840._000875.job.log.tgz.1
[2026-02-02 09:22:46] -rw------- 1 boinc boinc      6296 Feb  2 09:21 heartbeat.json
[2026-02-02 09:22:46] -rw------- 1 boinc boinc        95 Feb  2 09:22 pilot_heartbeat.json
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc        27 Feb  2 09:22 wrapper_checkpoint.txt
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc      8192 Feb  2 09:22 boinc_mmap_file
[2026-02-02 09:22:46] -rw------- 1 boinc boinc      5344 Feb  2 09:22 pilotlog.txt
[2026-02-02 09:22:46] -rw------- 1 boinc boinc   1080451 Feb  2 09:22 log.48310840._000875.job.log.1
[2026-02-02 09:22:46] -rw------- 1 boinc boinc       357 Feb  2 09:22 output.list
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc       620 Feb  2 09:22 runtime_log
[2026-02-02 09:22:46] -rw------- 1 boinc boinc   1382400 Feb  2 09:22 result.tar.gz
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc      8901 Feb  2 09:22 runtime_log.err
[2026-02-02 09:22:46] -rw------- 1 boinc boinc       658 Feb  2 09:22 1dRKDmRpt38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAO5KDmPsKrdm.diag
[2026-02-02 09:22:46] -rw-r--r-- 1 boinc boinc     12470 Feb  2 09:22 stderr.txt
[2026-02-02 09:22:46] HITS file was successfully produced:
[2026-02-02 09:22:46] -rw------- 1 boinc boinc 196310069 Feb  2 09:21 shared/HITS.pool.root.1
[2026-02-02 09:22:46]  *** Contents of shared directory: ***
[2026-02-02 09:22:46] total 725580
[2026-02-02 09:22:46] -rw-r--r-- 2 boinc boinc 544673756 Feb  2 07:16 ATLAS.root_0
[2026-02-02 09:22:46] -rw-r--r-- 2 boinc boinc    597750 Feb  2 07:16 input.tar.gz
[2026-02-02 09:22:46] -rw-r--r-- 2 boinc boinc     15845 Feb  2 07:16 start_atlas.sh
[2026-02-02 09:22:46] -rw------- 1 boinc boinc 196310069 Feb  2 09:21 HITS.pool.root.1
[2026-02-02 09:22:46] -rw------- 1 boinc boinc   1382400 Feb  2 09:22 result.tar.gz
09:22:48 (2256447): run_atlas exited; CPU time 14658.017541
09:22:48 (2256447): called boinc_finish(0)

</stderr_txt>
]]>

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