Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:50:07 (832491): wrapper (7.7.26015): starting
09:50:07 (832491): wrapper: running run_atlas (--nthreads 6)
[2026-02-02 09:50:07] Arguments: --nthreads 6
[2026-02-02 09:50:07] Threads: 6
[2026-02-02 09:50:07] Checking for CVMFS
[2026-02-02 09:50:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 09:50:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 09:50:09] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 09:50:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 09:50:10] 2.13.3.0 707625 910 66552 155768 2 50 41438212 52428801 922 130560 0 408279 99.981 31891 105 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-02 09:50:10] CVMFS is ok
[2026-02-02 09:50:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 09:50:10] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-02 09:50:10] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-02 09:50:10] Further information can be found at the LHC@home message board.
[2026-02-02 09:50:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 09:50:10] Checking for apptainer binary...
[2026-02-02 09:50:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 09:50:10] Running /usr/bin/apptainer --version
[2026-02-02 09:50:10] apptainer version 1.4.5-2.el9
[2026-02-02 09:50:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 09:50:10] Atto003
[2026-02-02 09:50:10] apptainer works
[2026-02-02 09:50:10] Set ATHENA_PROC_NUMBER=6
[2026-02-02 09:50:10] Set ATHENA_CORE_NUMBER=6
[2026-02-02 09:50:10] Starting ATLAS job with PandaID=6992459319
[2026-02-02 09:50:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 12:02:52]  *** The last 200 lines of the pilot log: ***
[2026-02-02 12:02:52] 2026-02-02 03:01:50,794 | INFO     | extracted standard info from prmon json
[2026-02-02 12:02:52] 2026-02-02 03:01:50,794 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 12:02:52] 2026-02-02 03:01:50,794 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 12:02:52] 2026-02-02 03:01:50,794 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 12:02:52] 2026-02-02 03:01:50,794 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 12:02:52] 2026-02-02 03:01:50,796 | INFO     | fitting pss+swap vs Time
[2026-02-02 12:02:52] 2026-02-02 03:01:50,796 | INFO     | sum of square deviations: 665612480.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,797 | INFO     | sum of deviations: 4338913346.999995
[2026-02-02 12:02:52] 2026-02-02 03:01:50,797 | INFO     | mean x: 1769997357.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,797 | INFO     | mean y: 2537295.3410852714
[2026-02-02 12:02:52] 2026-02-02 03:01:50,797 | INFO     | intersect: -11535505315.341356
[2026-02-02 12:02:52] 2026-02-02 03:01:50,797 | INFO     | chi2: 1.8313601850215964
[2026-02-02 12:02:52] 2026-02-02 03:01:50,797 | INFO     | sum of square deviations: 591173875.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,798 | INFO     | sum of deviations: 4120572478.499996
[2026-02-02 12:02:52] 2026-02-02 03:01:50,798 | INFO     | mean x: 1769997204.5
[2026-02-02 12:02:52] 2026-02-02 03:01:50,798 | INFO     | mean y: 2536847.7983870967
[2026-02-02 12:02:52] 2026-02-02 03:01:50,798 | INFO     | intersect: -12334614836.86398
[2026-02-02 12:02:52] 2026-02-02 03:01:50,798 | INFO     | chi2: 1.83271185413327
[2026-02-02 12:02:52] 2026-02-02 03:01:50,798 | INFO     | current chi2=1.83271185413327 (change=-0.07380684164310287 %)
[2026-02-02 12:02:52] 2026-02-02 03:01:50,798 | INFO     | right removable region: 123
[2026-02-02 12:02:52] 2026-02-02 03:01:50,799 | INFO     | sum of square deviations: 591173875.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,799 | INFO     | sum of deviations: -16792953764.000002
[2026-02-02 12:02:52] 2026-02-02 03:01:50,799 | INFO     | mean x: 1769997509.5
[2026-02-02 12:02:52] 2026-02-02 03:01:50,799 | INFO     | mean y: 2579836.564516129
[2026-02-02 12:02:52] 2026-02-02 03:01:50,799 | INFO     | intersect: 50281334694.31031
[2026-02-02 12:02:52] 2026-02-02 03:01:50,799 | INFO     | chi2: 0.18266385810188376
[2026-02-02 12:02:52] 2026-02-02 03:01:50,800 | INFO     | current chi2=0.18266385810188376 (change=90.02578195180487 %)
[2026-02-02 12:02:52] 2026-02-02 03:01:50,800 | INFO     | sum of square deviations: 522502820.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,800 | INFO     | sum of deviations: -12845436669.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,800 | INFO     | mean x: 1769997662.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,800 | INFO     | mean y: 2571026.31092437
[2026-02-02 12:02:52] 2026-02-02 03:01:50,800 | INFO     | intersect: 43516963678.773674
[2026-02-02 12:02:52] 2026-02-02 03:01:50,801 | INFO     | chi2: 0.17275285404468244
[2026-02-02 12:02:52] 2026-02-02 03:01:50,801 | INFO     | current chi2=0.17275285404468244 (change=5.425815571941605 %)
[2026-02-02 12:02:52] 2026-02-02 03:01:50,801 | INFO     | left removable region: 20
[2026-02-02 12:02:52] 2026-02-02 03:01:50,801 | INFO     | sum of square deviations: 338804492.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,801 | INFO     | sum of deviations: -2850440818.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,801 | INFO     | mean x: 1769997784.0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,801 | INFO     | mean y: 2545426.4077669904
[2026-02-02 12:02:52] 2026-02-02 03:01:50,801 | INFO     | intersect: 14893947548.913116
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | chi2: 0.09754307002495242
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | current memory leak: -8.41 B/s (using 103 data points, chi2=0.10)
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | could have reported an average CPU frequency of 3699 MHz (8 samples)
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | ..............................
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | . Timing measurements:
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | . get job = 0 s
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | . initial setup = 9 s
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | . payload setup = 4 s
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | . stage-in = 0 s
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | . payload execution = 7857 s
[2026-02-02 12:02:52] 2026-02-02 03:01:50,802 | INFO     | . stage-out = 0 s
[2026-02-02 12:02:52] 2026-02-02 03:01:50,803 | INFO     | . log creation = 0 s
[2026-02-02 12:02:52] 2026-02-02 03:01:50,803 | INFO     | ..............................
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | 
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | job summary report
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | --------------------------------------------------
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | PanDA job id: 6992459319
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | task id: 48431113
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | errors: (none)
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | pilot state: finished 
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | transexitcode: 0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | exeerrorcode: 0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,868 | INFO     | exeerrordiag: 
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | exitcode: 0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | exitmsg: OK
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | cpuconsumptiontime: 44854 s
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | nevents: 400
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | neventsw: 0
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | pid: 841217
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | pgrp: 841217
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | corecount: 6
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | event service: False
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | sizes: {0: 2277808, 1: 2278325, 11: 2278325, 7865: 2306088, 7866: 2315280}
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | --------------------------------------------------
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | 
[2026-02-02 12:02:52] 2026-02-02 03:01:50,869 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-02-02 12:02:52] 2026-02-02 03:01:50,880 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,882 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,882 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,882 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,882 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 12:02:52] 2026-02-02 03:01:50,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,882 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 12:02:52] 2026-02-02 03:01:50,882 | INFO     | job 6992459319 has completed (purged errors)
[2026-02-02 12:02:52] 2026-02-02 03:01:50,882 | INFO     | overall cleanup function is called
[2026-02-02 12:02:52] 2026-02-02 03:01:51,888 | INFO     | --- collectZombieJob: --- 10, [841217]
[2026-02-02 12:02:52] 2026-02-02 03:01:51,888 | INFO     | zombie collector waiting for pid 841217
[2026-02-02 12:02:52] 2026-02-02 03:01:51,888 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 12:02:52] 2026-02-02 03:01:51,888 | INFO     | collected zombie processes
[2026-02-02 12:02:52] 2026-02-02 03:01:51,888 | INFO     | will attempt to kill all subprocesses of pid=841217
[2026-02-02 12:02:52] 2026-02-02 03:01:51,944 | INFO     | process IDs to be killed: [841217] (in reverse order)
[2026-02-02 12:02:52] 2026-02-02 03:01:51,969 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 12:02:52] 2026-02-02 03:01:51,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 12:02:52] 2026-02-02 03:01:51,971 | INFO     | did not find any defunct processes belonging to 841217
[2026-02-02 12:02:52] 2026-02-02 03:01:51,973 | INFO     | did not find any defunct processes belonging to 841217
[2026-02-02 12:02:52] 2026-02-02 03:01:51,973 | INFO     | ready for new job
[2026-02-02 12:02:52] 2026-02-02 03:01:51,973 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 12:02:52] 2026-02-02 03:01:51,974 | INFO     | **************************************
[2026-02-02 12:02:52] 2026-02-02 03:01:51,974 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 12:02:52] 2026-02-02 03:01:51,974 | INFO     | **************************************
[2026-02-02 12:02:52] 2026-02-02 03:01:51,975 | INFO     | 
[2026-02-02 12:02:52] 2026-02-02 03:01:51,975 | INFO     | architecture information:
[2026-02-02 12:02:52] 2026-02-02 03:01:51,975 | INFO     | executing command: cat /etc/os-release
[2026-02-02 12:02:52] 2026-02-02 03:01:51,984 | INFO     | cat /etc/os-release:
[2026-02-02 12:02:52] NAME="CentOS Linux"
[2026-02-02 12:02:52] VERSION="7 (Core)"
[2026-02-02 12:02:52] ID="centos"
[2026-02-02 12:02:52] ID_LIKE="rhel fedora"
[2026-02-02 12:02:52] VERSION_ID="7"
[2026-02-02 12:02:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 12:02:52] ANSI_COLOR="0;31"
[2026-02-02 12:02:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 12:02:52] HOME_URL="https://www.centos.org/"
[2026-02-02 12:02:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 12:02:52] 
[2026-02-02 12:02:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 12:02:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 12:02:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 12:02:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 12:02:52] 
[2026-02-02 12:02:52] 2026-02-02 03:01:51,984 | INFO     | **************************************
[2026-02-02 12:02:52] 2026-02-02 03:01:52,486 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-02-02 12:02:52] 2026-02-02 03:01:52,494 | INFO     | sufficient remaining disk space (102817071104 B)
[2026-02-02 12:02:52] 2026-02-02 03:01:52,495 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 12:02:52] 2026-02-02 03:01:52,495 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 12:02:52] 2026-02-02 03:01:52,495 | INFO     | update_server=False
[2026-02-02 12:02:52] 2026-02-02 03:01:52,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 12:02:52] 2026-02-02 03:01:52,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 12:02:52] 2026-02-02 03:01:52,495 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 12:02:52] 2026-02-02 03:01:52,676 | INFO     | all job control threads have been joined
[2026-02-02 12:02:52] 2026-02-02 03:01:53,052 | INFO     | all payload control threads have been joined
[2026-02-02 12:02:52] 2026-02-02 03:01:53,138 | INFO     | all data control threads have been joined
[2026-02-02 12:02:52] 2026-02-02 03:01:53,325 | WARNING  | process 841217 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 12:02:52] 2026-02-02 03:01:53,365 | INFO     | using path: /var/lib/boinc/slots/4/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 12:02:52] 2026-02-02 03:01:53,366 | INFO     | using path: /var/lib/boinc/slots/4/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 12:02:52] 2026-02-02 03:01:53,366 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-02 12:02:52] 2026-02-02 03:01:53,366 | WARNING  | maxPSS not found in memory monitor output
[2026-02-02 12:02:52] 2026-02-02 03:01:53,367 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/4/PanDA_Pilot-6992459319/payload.stdout) since it has not been created yet
[2026-02-02 12:02:52] 2026-02-02 03:01:53,367 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-02-02 12:02:52] 2026-02-02 03:01:53,375 | INFO     | sufficient remaining disk space (102817071104 B)
[2026-02-02 12:02:52] 2026-02-02 03:01:53,375 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-02 12:02:52] 2026-02-02 03:01:53,375 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/4/PanDA_Pilot-6992459319/HITS.48431113._000296.pool.root.1 since it does not exist
[2026-02-02 12:02:52] 2026-02-02 03:01:53,431 | INFO     | number of running child processes to parent process 841217: 1
[2026-02-02 12:02:52] 2026-02-02 03:01:53,431 | INFO     | maximum number of monitored processes: 6
[2026-02-02 12:02:52] 2026-02-02 03:01:53,432 | INFO     | aborting job monitoring since job object (job id=6992459319) has expired
[2026-02-02 12:02:52] 2026-02-02 03:01:53,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 12:02:52] 2026-02-02 03:01:53,432 | INFO     | will abort loop
[2026-02-02 12:02:52] 2026-02-02 03:01:53,500 | INFO     | [job] queue monitor thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:53,500 | INFO     | [job] retrieve thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:53,531 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:53,568 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 12:02:52] 2026-02-02 03:01:53,575 | INFO     | [data] copytool_in thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:53,681 | INFO     | [job] control thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:53,892 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:53,915 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:54,057 | INFO     | [payload] control thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:54,136 | INFO     | [payload] validate_post thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:54,143 | INFO     | [data] control thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:54,367 | INFO     | [payload] failed_post thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:54,398 | INFO     | [job] validate thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:54,436 | INFO     | [job] job monitor thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:54,703 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:55,573 | INFO     | [data] copytool_out thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:01:56,500 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 12:02:52] 2026-02-02 03:02:22,705 | INFO     | PID=836610 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-02 12:02:52] 2026-02-02 03:02:22,705 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 12:02:52] 2026-02-02 03:02:22,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 12:02:52] 2026-02-02 03:02:22,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 12:02:52] 2026-02-02 03:02:46,692 | INFO     | [monitor] cgroup control has ended
[2026-02-02 12:02:52] 2026-02-02 03:02:47,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140494530606912)>', '<ExcThread(monitor, started 140494168364800)>']
[2026-02-02 12:02:52] 2026-02-02 03:02:47,830 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 12:02:52] 2026-02-02 03:02:47,830 | INFO     | [monitor] control thread has ended
[2026-02-02 12:02:52] 2026-02-02 03:02:52,370 | INFO     | all workflow threads have been joined
[2026-02-02 12:02:52] 2026-02-02 03:02:52,370 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 12:02:52] 2026-02-02 03:02:52,370 | INFO     | traces error code: 0
[2026-02-02 12:02:52] 2026-02-02 03:02:52,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 12:02:52] 2026-02-02 03:02:52,444 [wrapper] ==== pilot stdout END ====
[2026-02-02 12:02:52] 2026-02-02 03:02:52,446 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 12:02:52] 2026-02-02 03:02:52,447 [wrapper] pilotpid: 836610
[2026-02-02 12:02:52] 2026-02-02 03:02:52,449 [wrapper] Pilot exit status: 0
[2026-02-02 12:02:52] 2026-02-02 03:02:52,460 [wrapper] pandaids: 6992459319
[2026-02-02 12:02:52] 2026-02-02 03:02:52,476 [wrapper] cleanup supervisor_pilot  846372 836611
[2026-02-02 12:02:52] 2026-02-02 03:02:52,482 [wrapper] Test setup, not cleaning
[2026-02-02 12:02:52] 2026-02-02 03:02:52,485 [wrapper] apfmon messages muted
[2026-02-02 12:02:52] 2026-02-02 03:02:52,487 [wrapper] ==== wrapper stdout END ====
[2026-02-02 12:02:52] 2026-02-02 03:02:52,488 [wrapper] ==== wrapper stderr END ====
[2026-02-02 12:02:52]  *** Error codes and diagnostics ***
[2026-02-02 12:02:52]     "exeErrorCode": 0,
[2026-02-02 12:02:52]     "exeErrorDiag": "",
[2026-02-02 12:02:52]     "pilotErrorCode": 0,
[2026-02-02 12:02:52]     "pilotErrorDiag": "",
[2026-02-02 12:02:52]  *** Listing of results directory ***
[2026-02-02 12:02:52] total 887840
[2026-02-02 12:02:52] -rwx------. 1 boinc boinc     36322 Feb  1 21:59 runpilot2-wrapper.sh
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc    584422 Feb  1 22:02 pilot3.tar.gz
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc      5111 Feb  1 22:03 queuedata.json
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc       100 Feb  2 09:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 12:02:52] -rwxr-xr-x. 1 boinc boinc      7986 Feb  2 09:50 run_atlas
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc       105 Feb  2 09:50 job.xml
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc      9345 Feb  2 09:50 init_data.xml
[2026-02-02 12:02:52] -rw-r--r--. 2 boinc boinc 647945586 Feb  2 09:50 EVNT.48431111._000006.pool.root.1
[2026-02-02 12:02:52] -rw-r--r--. 2 boinc boinc     15845 Feb  2 09:50 start_atlas.sh
[2026-02-02 12:02:52] drwxrwx--x. 2 boinc boinc        68 Feb  2 09:50 shared
[2026-02-02 12:02:52] -rw-r--r--. 2 boinc boinc    597753 Feb  2 09:50 input.tar.gz
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc         0 Feb  2 09:50 boinc_lockfile
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc      2542 Feb  2 09:50 pandaJob.out
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc   1009765 Feb  2 09:50 agis_schedconf.cvmfs.json
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc   1511668 Feb  2 09:50 agis_ddmendpoints.agis.ALL.json
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc       418 Feb  2 09:50 workernode_map.json
[2026-02-02 12:02:52] drwx------. 5 boinc boinc      4096 Feb  2 09:50 pilot3
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc 254251507 Feb  2 12:01 HITS.48431113._000296.pool.root.1
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc        95 Feb  2 12:01 pilot_heartbeat.json
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc       530 Feb  2 12:01 boinc_task_state.xml
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc      1017 Feb  2 12:01 memory_monitor_summary.json
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc    376635 Feb  2 12:01 log.48431113._000296.job.log.tgz.1
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc      6319 Feb  2 12:01 heartbeat.json
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc      8192 Feb  2 12:02 boinc_mmap_file
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc        27 Feb  2 12:02 wrapper_checkpoint.txt
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc      6228 Feb  2 12:02 pilotlog.txt
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc   1135236 Feb  2 12:02 log.48431113._000296.job.log.1
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc       357 Feb  2 12:02 output.list
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc       620 Feb  2 12:02 runtime_log
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc   1525760 Feb  2 12:02 result.tar.gz
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc      8764 Feb  2 12:02 runtime_log.err
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc       639 Feb  2 12:02 DvrNDmZEm68n9Rq4apOajLDm4fhM0noT9bVooX4SDma7PKDm2uZOum.diag
[2026-02-02 12:02:52] -rw-r--r--. 1 boinc boinc     21474 Feb  2 12:02 stderr.txt
[2026-02-02 12:02:52] HITS file was successfully produced:
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc 254251507 Feb  2 12:01 shared/HITS.pool.root.1
[2026-02-02 12:02:52]  *** Contents of shared directory: ***
[2026-02-02 12:02:52] total 883148
[2026-02-02 12:02:52] -rw-r--r--. 2 boinc boinc 647945586 Feb  2 09:50 ATLAS.root_0
[2026-02-02 12:02:52] -rw-r--r--. 2 boinc boinc     15845 Feb  2 09:50 start_atlas.sh
[2026-02-02 12:02:52] -rw-r--r--. 2 boinc boinc    597753 Feb  2 09:50 input.tar.gz
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc 254251507 Feb  2 12:01 HITS.pool.root.1
[2026-02-02 12:02:52] -rw-------. 1 boinc boinc   1525760 Feb  2 12:02 result.tar.gz
12:02:53 (832491): run_atlas exited; CPU time 44934.926152
12:02:53 (832491): called boinc_finish(0)

</stderr_txt>
]]>

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