Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
21:58:55 (991066): wrapper (7.7.26015): starting
21:58:55 (991066): wrapper: running run_atlas (--nthreads 4)
[2026-02-06 21:58:55] Arguments: --nthreads 4
[2026-02-06 21:58:55] Threads: 4
[2026-02-06 21:58:55] Checking for CVMFS
[2026-02-06 21:58:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 21:58:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 21:58:55] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 21:58:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 21:58:55] 2.13.3.0 12357 1092 47924 155958 1 50 23743748 33554433 0 130560 0 743745 99.986 51320 213 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-02-06 21:58:55] CVMFS is ok
[2026-02-06 21:58:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 21:58:55] Checking for apptainer binary...
[2026-02-06 21:58:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 21:58:55] Running /usr/bin/apptainer --version
[2026-02-06 21:58:55] apptainer version 1.4.5
[2026-02-06 21:58:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 21:58:55] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-02-06 21:58:55] apptainer works
[2026-02-06 21:58:55] Set ATHENA_PROC_NUMBER=4
[2026-02-06 21:58:55] Set ATHENA_CORE_NUMBER=4
[2026-02-06 21:58:55] Starting ATLAS job with PandaID=6992353625
[2026-02-06 21:58:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 22:53:12]  *** The last 200 lines of the pilot log: ***
[2026-02-06 22:53:12]  guid=ead75566-1a63-489f-8dda-059960bccc6f
[2026-02-06 22:53:12]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-06 22:53:12]  is_altstaged=None
[2026-02-06 22:53:12]  is_tar=False
[2026-02-06 22:53:12]  lfn=log.48310749._003110.job.log.tgz.1
[2026-02-06 22:53:12]  mtime=0
[2026-02-06 22:53:12]  protocol_id=None
[2026-02-06 22:53:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-06 22:53:12]  replicas=None
[2026-02-06 22:53:12]  scope=mc23_13p6TeV
[2026-02-06 22:53:12]  status=None
[2026-02-06 22:53:12]  status_code=0
[2026-02-06 22:53:12]  storage_token=
[2026-02-06 22:53:12]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-6992353625/log.48310749._003110.job.log.tgz.1
[2026-02-06 22:53:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/9e/log.48310749._003110.job.log.tgz.1
[2026-02-06 22:53:12]  workdir=None
[2026-02-06 22:53:12] ]
[2026-02-06 22:53:12] 2026-02-06 20:52:07,135 | INFO     | transferring file log.48310749._003110.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-6992353625/log.48310749._003110.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-02-06 22:53:12] 2026-02-06 20:52:07,135 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-6992353625/log.48310749._003110.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48310749._003110.job
[2026-02-06 22:53:12] 2026-02-06 20:52:07,143 | INFO     | adding to output.list: log.48310749._003110.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/9e/log.48310749._003110.job.log.tg
[2026-02-06 22:53:12] 2026-02-06 20:52:07,144 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-06 22:53:12] 2026-02-06 20:52:07,144 | INFO     | summary of transferred files:
[2026-02-06 22:53:12] 2026-02-06 20:52:07,144 | INFO     |  -- lfn=log.48310749._003110.job.log.tgz.1, status_code=0, status=transferred
[2026-02-06 22:53:12] 2026-02-06 20:52:07,144 | INFO     | stage-out finished correctly
[2026-02-06 22:53:12] 2026-02-06 20:52:07,913 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-06 22:53:12] 2026-02-06 20:52:08,363 | INFO     | time since job start (3186s) is within the limit (349056.0s)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,387 | INFO     | job 6992353625 has state=finished
[2026-02-06 22:53:12] 2026-02-06 20:52:08,387 | INFO     | preparing for final server update for job 6992353625 in state='finished'
[2026-02-06 22:53:12] 2026-02-06 20:52:08,387 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-6992353625/jobReport.json
[2026-02-06 22:53:12] 2026-02-06 20:52:08,388 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-02-06 22:53:12] 2026-02-06 20:52:08,389 | INFO     | this job has now completed (state=finished)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,389 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,389 | INFO     | log transfer has been attempted: DONE
[2026-02-06 22:53:12] 2026-02-06 20:52:08,389 | INFO     | job 6992353625 has finished - writing final server update
[2026-02-06 22:53:12] 2026-02-06 20:52:08,389 | INFO     | total number of processed events: 400 (read)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,390 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-6992353625/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,391 | INFO     | extracted standard info from prmon json
[2026-02-06 22:53:12] 2026-02-06 20:52:08,391 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 22:53:12] 2026-02-06 20:52:08,391 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 22:53:12] 2026-02-06 20:52:08,391 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 22:53:12] 2026-02-06 20:52:08,391 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 22:53:12] 2026-02-06 20:52:08,391 | INFO     | fitting pss+swap vs Time
[2026-02-06 22:53:12] 2026-02-06 20:52:08,391 | INFO     | sum of square deviations: 28242390.0
[2026-02-06 22:53:12] 2026-02-06 20:52:08,391 | INFO     | sum of deviations: -4771520161.999999
[2026-02-06 22:53:12] 2026-02-06 20:52:08,391 | INFO     | mean x: 1770409605.0
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | mean y: 2482331.111111111
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | intersect: 299111202423.7078
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | chi2: 0.09994769230088511
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | current memory leak: -168.95 B/s (using 45 data points, chi2=0.10)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | could have reported an average CPU frequency of 2877 MHz (5 samples)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | ..............................
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | . Timing measurements:
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | . get job = 0 s
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | . initial setup = 3 s
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | . payload setup = 2 s
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | . stage-in = 0 s
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | . payload execution = 3167 s
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | . stage-out = 0 s
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | . log creation = 0 s
[2026-02-06 22:53:12] 2026-02-06 20:52:08,392 | INFO     | ..............................
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | 
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | job summary report
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | --------------------------------------------------
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | PanDA job id: 6992353625
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | task id: 48310749
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | errors: (none)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | pilot state: finished 
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | transexitcode: 0
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | exeerrorcode: 0
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | exeerrordiag: 
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | exitcode: 0
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | exitmsg: OK
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | cpuconsumptiontime: 11913 s
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | nevents: 400
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | neventsw: 0
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | pid: 999508
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | pgrp: 999508
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | corecount: 4
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | event service: False
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | sizes: {0: 2282775, 1: 2283065, 11: 2283065, 3173: 2308662, 3174: 2317660, 3175: 2318070}
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | --------------------------------------------------
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | 
[2026-02-06 22:53:12] 2026-02-06 20:52:08,418 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-02-06 22:53:12] 2026-02-06 20:52:08,426 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | job 6992353625 has completed (purged errors)
[2026-02-06 22:53:12] 2026-02-06 20:52:08,427 | INFO     | overall cleanup function is called
[2026-02-06 22:53:12] 2026-02-06 20:52:09,433 | INFO     | --- collectZombieJob: --- 10, [999508]
[2026-02-06 22:53:12] 2026-02-06 20:52:09,433 | INFO     | zombie collector waiting for pid 999508
[2026-02-06 22:53:12] 2026-02-06 20:52:09,433 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 22:53:12] 2026-02-06 20:52:09,433 | INFO     | collected zombie processes
[2026-02-06 22:53:12] 2026-02-06 20:52:09,433 | INFO     | will attempt to kill all subprocesses of pid=999508
[2026-02-06 22:53:12] 2026-02-06 20:52:09,518 | INFO     | process IDs to be killed: [999508] (in reverse order)
[2026-02-06 22:53:12] 2026-02-06 20:52:09,547 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 22:53:12] 2026-02-06 20:52:09,547 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 22:53:12] 2026-02-06 20:52:09,549 | INFO     | did not find any defunct processes belonging to 999508
[2026-02-06 22:53:12] 2026-02-06 20:52:09,551 | INFO     | did not find any defunct processes belonging to 999508
[2026-02-06 22:53:12] 2026-02-06 20:52:09,551 | INFO     | ready for new job
[2026-02-06 22:53:12] 2026-02-06 20:52:09,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 22:53:12] 2026-02-06 20:52:09,552 | INFO     | **************************************
[2026-02-06 22:53:12] 2026-02-06 20:52:09,552 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-06 22:53:12] 2026-02-06 20:52:09,552 | INFO     | **************************************
[2026-02-06 22:53:12] 2026-02-06 20:52:09,552 | INFO     | 
[2026-02-06 22:53:12] 2026-02-06 20:52:09,553 | INFO     | architecture information:
[2026-02-06 22:53:12] 2026-02-06 20:52:09,553 | INFO     | executing command: cat /etc/os-release
[2026-02-06 22:53:12] 2026-02-06 20:52:09,559 | INFO     | cat /etc/os-release:
[2026-02-06 22:53:12] NAME="CentOS Linux"
[2026-02-06 22:53:12] VERSION="7 (Core)"
[2026-02-06 22:53:12] ID="centos"
[2026-02-06 22:53:12] ID_LIKE="rhel fedora"
[2026-02-06 22:53:12] VERSION_ID="7"
[2026-02-06 22:53:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 22:53:12] ANSI_COLOR="0;31"
[2026-02-06 22:53:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 22:53:12] HOME_URL="https://www.centos.org/"
[2026-02-06 22:53:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 22:53:12] 
[2026-02-06 22:53:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 22:53:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 22:53:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 22:53:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 22:53:12] 
[2026-02-06 22:53:12] 2026-02-06 20:52:09,559 | INFO     | **************************************
[2026-02-06 22:53:12] 2026-02-06 20:52:09,800 | WARNING  | process 999508 can no longer be monitored (due to stat problems) - aborting
[2026-02-06 22:53:12] 2026-02-06 20:52:09,852 | INFO     | using path: /home/ek/BOINC/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 22:53:12] 2026-02-06 20:52:09,933 | INFO     | number of running child processes to parent process 999508: 1
[2026-02-06 22:53:12] 2026-02-06 20:52:09,933 | INFO     | maximum number of monitored processes: 6
[2026-02-06 22:53:12] 2026-02-06 20:52:09,933 | INFO     | aborting job monitoring since job object (job id=6992353625) has expired
[2026-02-06 22:53:12] 2026-02-06 20:52:10,062 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-02-06 22:53:12] 2026-02-06 20:52:10,067 | INFO     | sufficient remaining disk space (65106083840 B)
[2026-02-06 22:53:12] 2026-02-06 20:52:10,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 22:53:12] 2026-02-06 20:52:10,067 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 22:53:12] 2026-02-06 20:52:10,067 | INFO     | update_server=False
[2026-02-06 22:53:12] 2026-02-06 20:52:10,067 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 22:53:12] 2026-02-06 20:52:10,067 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-06 22:53:12] 2026-02-06 20:52:10,068 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 22:53:12] 2026-02-06 20:52:10,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 22:53:12] 2026-02-06 20:52:10,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 22:53:12] 2026-02-06 20:52:10,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 22:53:12] 2026-02-06 20:52:10,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 22:53:12] 2026-02-06 20:52:10,068 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 22:53:12] 2026-02-06 20:52:10,068 | INFO     | will abort loop
[2026-02-06 22:53:12] 2026-02-06 20:52:10,175 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 22:53:12] 2026-02-06 20:52:10,183 | INFO     | all data control threads have been joined
[2026-02-06 22:53:12] 2026-02-06 20:52:10,914 | INFO     | all job control threads have been joined
[2026-02-06 22:53:12] 2026-02-06 20:52:11,072 | INFO     | [job] retrieve thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:11,073 | INFO     | [job] queue monitor thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:11,073 | INFO     | [job] job monitor thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:11,157 | INFO     | [payload] failed_post thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:11,189 | INFO     | [data] control thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:11,344 | INFO     | all payload control threads have been joined
[2026-02-06 22:53:12] 2026-02-06 20:52:11,577 | INFO     | [job] validate thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:11,802 | INFO     | [data] copytool_in thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:11,814 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:11,919 | INFO     | [job] control thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:11,985 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:12,115 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:12,180 | INFO     | [data] copytool_out thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:12,349 | INFO     | [payload] control thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:12,447 | INFO     | [payload] validate_post thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:14,074 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:52:20,768 | INFO     | job.realtimelogging is not enabled
[2026-02-06 22:53:12] 2026-02-06 20:52:21,774 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 22:53:12] 2026-02-06 20:53:06,045 | INFO     | [monitor] cgroup control has ended
[2026-02-06 22:53:12] 2026-02-06 20:53:07,395 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140604613834560)>', '<ExcThread(monitor, started 140603992037120)>']
[2026-02-06 22:53:12] 2026-02-06 20:53:08,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 22:53:12] 2026-02-06 20:53:08,328 | INFO     | [monitor] control thread has ended
[2026-02-06 22:53:12] 2026-02-06 20:53:12,411 | INFO     | all workflow threads have been joined
[2026-02-06 22:53:12] 2026-02-06 20:53:12,411 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 22:53:12] 2026-02-06 20:53:12,411 | INFO     | traces error code: 0
[2026-02-06 22:53:12] 2026-02-06 20:53:12,412 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 22:53:12] 2026-02-06 20:53:12,453 [wrapper] ==== pilot stdout END ====
[2026-02-06 22:53:12] 2026-02-06 20:53:12,454 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 22:53:12] 2026-02-06 20:53:12,456 [wrapper] pilotpid: 994881
[2026-02-06 22:53:12] 2026-02-06 20:53:12,457 [wrapper] Pilot exit status: 0
[2026-02-06 22:53:12] 2026-02-06 20:53:12,462 [wrapper] pandaids: 6992353625
[2026-02-06 22:53:12] 2026-02-06 20:53:12,482 [wrapper] cleanup supervisor_pilot 1033715 994882
[2026-02-06 22:53:12] 2026-02-06 20:53:12,484 [wrapper] Test setup, not cleaning
[2026-02-06 22:53:12] 2026-02-06 20:53:12,485 [wrapper] apfmon messages muted
[2026-02-06 22:53:12] 2026-02-06 20:53:12,487 [wrapper] ==== wrapper stdout END ====
[2026-02-06 22:53:12] 2026-02-06 20:53:12,488 [wrapper] ==== wrapper stderr END ====
[2026-02-06 22:53:12]  *** Error codes and diagnostics ***
[2026-02-06 22:53:12]     "exeErrorCode": 0,
[2026-02-06 22:53:12]     "exeErrorDiag": "",
[2026-02-06 22:53:12]     "pilotErrorCode": 0,
[2026-02-06 22:53:12]     "pilotErrorDiag": "",
[2026-02-06 22:53:12]  *** Listing of results directory ***
[2026-02-06 22:53:12] total 667284
[2026-02-06 22:53:12] -rw-r--r-- 1 ek ek    584422 Feb  1 14:55 pilot3.tar.gz
[2026-02-06 22:53:12] -rwx------ 1 ek ek     36322 Feb  1 14:58 runpilot2-wrapper.sh
[2026-02-06 22:53:12] -rw-r--r-- 1 ek ek      5111 Feb  1 15:00 queuedata.json
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek       100 Feb  6 21:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 22:53:12] -rwxr-xr-x 1 ek ek      7986 Feb  6 21:58 run_atlas
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek       105 Feb  6 21:58 job.xml
[2026-02-06 22:53:12] -rw-r--r-- 2 ek ek 491208412 Feb  6 21:58 EVNT.48310747._000063.pool.root.1
[2026-02-06 22:53:12] -rw-r--r-- 2 ek ek    597761 Feb  6 21:58 input.tar.gz
[2026-02-06 22:53:12] -rw-r--r-- 2 ek ek     15845 Feb  6 21:58 start_atlas.sh
[2026-02-06 22:53:12] drwxrwx--x 2 ek ek      4096 Feb  6 21:58 shared
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek         0 Feb  6 21:58 boinc_setup_complete
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek      9841 Feb  6 21:58 init_data.xml
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek         0 Feb  6 21:58 boinc_lockfile
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek      2522 Feb  6 21:58 pandaJob.out
[2026-02-06 22:53:12] -rw------- 1 ek ek        50 Feb  6 21:58 setup.sh.local
[2026-02-06 22:53:12] -rw------- 1 ek ek   1009512 Feb  6 21:58 agis_schedconf.cvmfs.json
[2026-02-06 22:53:12] -rw------- 1 ek ek   1513088 Feb  6 21:59 agis_ddmendpoints.agis.ALL.json
[2026-02-06 22:53:12] -rw------- 1 ek ek       433 Feb  6 21:59 workernode_map.json
[2026-02-06 22:53:12] drwx------ 5 ek ek      4096 Feb  6 21:59 pilot3
[2026-02-06 22:53:12] -rw------- 1 ek ek        95 Feb  6 22:51 pilot_heartbeat.json
[2026-02-06 22:53:12] -rw------- 1 ek ek 186684023 Feb  6 22:51 HITS.48310749._003110.pool.root.1
[2026-02-06 22:53:12] -rw------- 1 ek ek      1031 Feb  6 22:52 memory_monitor_summary.json
[2026-02-06 22:53:12] -rw------- 1 ek ek    241306 Feb  6 22:52 log.48310749._003110.job.log.tgz.1
[2026-02-06 22:53:12] -rw------- 1 ek ek      6340 Feb  6 22:52 heartbeat.json
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek       530 Feb  6 22:52 boinc_task_state.xml
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek        27 Feb  6 22:52 wrapper_checkpoint.txt
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek      8192 Feb  6 22:52 boinc_mmap_file
[2026-02-06 22:53:12] -rw------- 1 ek ek      5139 Feb  6 22:53 pilotlog.txt
[2026-02-06 22:53:12] -rw------- 1 ek ek    484270 Feb  6 22:53 log.48310749._003110.job.log.1
[2026-02-06 22:53:12] -rw------- 1 ek ek       357 Feb  6 22:53 output.list
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek       620 Feb  6 22:53 runtime_log
[2026-02-06 22:53:12] -rw------- 1 ek ek    747520 Feb  6 22:53 result.tar.gz
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek      9501 Feb  6 22:53 runtime_log.err
[2026-02-06 22:53:12] -rw------- 1 ek ek       663 Feb  6 22:53 1EULDmaDm68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpRQKDm1Md4Lo.diag
[2026-02-06 22:53:12] -rw-rw-r-- 1 ek ek     21121 Feb  6 22:53 stderr.txt
[2026-02-06 22:53:12] HITS file was successfully produced:
[2026-02-06 22:53:12] -rw------- 1 ek ek 186684023 Feb  6 22:51 shared/HITS.pool.root.1
[2026-02-06 22:53:12]  *** Contents of shared directory: ***
[2026-02-06 22:53:12] total 663348
[2026-02-06 22:53:12] -rw-r--r-- 2 ek ek 491208412 Feb  6 21:58 ATLAS.root_0
[2026-02-06 22:53:12] -rw-r--r-- 2 ek ek    597761 Feb  6 21:58 input.tar.gz
[2026-02-06 22:53:12] -rw-r--r-- 2 ek ek     15845 Feb  6 21:58 start_atlas.sh
[2026-02-06 22:53:12] -rw------- 1 ek ek 186684023 Feb  6 22:51 HITS.pool.root.1
[2026-02-06 22:53:12] -rw------- 1 ek ek    747520 Feb  6 22:53 result.tar.gz
22:53:14 (991066): run_atlas exited; CPU time 11939.972524
22:53:14 (991066): called boinc_finish(0)

</stderr_txt>
]]>

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