Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:36:19 (1046107): wrapper (7.7.26015): starting
10:36:19 (1046107): wrapper: running run_atlas (--nthreads 3)
[2026-02-02 10:36:19] Arguments: --nthreads 3
[2026-02-02 10:36:19] Threads: 3
[2026-02-02 10:36:19] Checking for CVMFS
[2026-02-02 10:36:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 10:36:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 10:36:19] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 10:36:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 10:36:19] 2.9.2.0 4027610 7038 86868 155781 3 49 25215050 36864001 0 130560 0 3162209 99.987 220670 13704 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 10:36:19] CVMFS is ok
[2026-02-02 10:36:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 10:36:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 10:36:19] Further information can be found at the LHC@home message board.
[2026-02-02 10:36:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 10:36:19] Checking for apptainer binary...
[2026-02-02 10:36:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 10:36:19] Running /usr/bin/apptainer --version
[2026-02-02 10:36:19] apptainer version 1.4.1-1.1
[2026-02-02 10:36:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 10:36:19] magicA246a
[2026-02-02 10:36:19] apptainer works
[2026-02-02 10:36:19] Set ATHENA_PROC_NUMBER=3
[2026-02-02 10:36:19] Set ATHENA_CORE_NUMBER=3
[2026-02-02 10:36:19] Starting ATLAS job with PandaID=6992459649
[2026-02-02 10:36:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 12:31:44]  *** The last 200 lines of the pilot log: ***
[2026-02-02 12:31:44] 2026-02-02 11:31:12,261 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 12:31:44] 2026-02-02 11:31:12,261 | INFO     | job 6992459649 has completed (purged errors)
[2026-02-02 12:31:44] 2026-02-02 11:31:12,261 | INFO     | overall cleanup function is called
[2026-02-02 12:31:44] 2026-02-02 11:31:13,267 | INFO     | --- collectZombieJob: --- 10, [1054569]
[2026-02-02 12:31:44] 2026-02-02 11:31:13,267 | INFO     | zombie collector waiting for pid 1054569
[2026-02-02 12:31:44] 2026-02-02 11:31:13,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 12:31:44] 2026-02-02 11:31:13,268 | INFO     | collected zombie processes
[2026-02-02 12:31:44] 2026-02-02 11:31:13,268 | INFO     | will attempt to kill all subprocesses of pid=1054569
[2026-02-02 12:31:44] 2026-02-02 11:31:13,324 | INFO     | process IDs to be killed: [1054569] (in reverse order)
[2026-02-02 12:31:44] 2026-02-02 11:31:13,353 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 12:31:44] 2026-02-02 11:31:13,354 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 12:31:44] 2026-02-02 11:31:13,355 | INFO     | did not find any defunct processes belonging to 1054569
[2026-02-02 12:31:44] 2026-02-02 11:31:13,357 | INFO     | did not find any defunct processes belonging to 1054569
[2026-02-02 12:31:44] 2026-02-02 11:31:13,357 | INFO     | ready for new job
[2026-02-02 12:31:44] 2026-02-02 11:31:13,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 12:31:44] 2026-02-02 11:31:13,358 | INFO     | **************************************
[2026-02-02 12:31:44] 2026-02-02 11:31:13,358 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 12:31:44] 2026-02-02 11:31:13,358 | INFO     | **************************************
[2026-02-02 12:31:44] 2026-02-02 11:31:13,358 | INFO     | 
[2026-02-02 12:31:44] 2026-02-02 11:31:13,358 | INFO     | architecture information:
[2026-02-02 12:31:44] 2026-02-02 11:31:13,358 | INFO     | executing command: cat /etc/os-release
[2026-02-02 12:31:44] 2026-02-02 11:31:13,367 | INFO     | cat /etc/os-release:
[2026-02-02 12:31:44] NAME="CentOS Linux"
[2026-02-02 12:31:44] VERSION="7 (Core)"
[2026-02-02 12:31:44] ID="centos"
[2026-02-02 12:31:44] ID_LIKE="rhel fedora"
[2026-02-02 12:31:44] VERSION_ID="7"
[2026-02-02 12:31:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 12:31:44] ANSI_COLOR="0;31"
[2026-02-02 12:31:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 12:31:44] HOME_URL="https://www.centos.org/"
[2026-02-02 12:31:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 12:31:44] 
[2026-02-02 12:31:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 12:31:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 12:31:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 12:31:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 12:31:44] 
[2026-02-02 12:31:44] 2026-02-02 11:31:13,367 | INFO     | **************************************
[2026-02-02 12:31:44] 2026-02-02 11:31:13,870 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 12:31:44] 2026-02-02 11:31:13,882 | INFO     | sufficient remaining disk space (276001980416 B)
[2026-02-02 12:31:44] 2026-02-02 11:31:13,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 12:31:44] 2026-02-02 11:31:13,883 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 12:31:44] 2026-02-02 11:31:13,883 | INFO     | update_server=False
[2026-02-02 12:31:44] 2026-02-02 11:31:13,883 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 12:31:44] 2026-02-02 11:31:13,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 12:31:44] 2026-02-02 11:31:13,883 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 12:31:44] 2026-02-02 11:31:13,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 12:31:44] 2026-02-02 11:31:13,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 12:31:44] 2026-02-02 11:31:13,883 | INFO     | aborting loop
[2026-02-02 12:31:44] 2026-02-02 11:31:14,301 | INFO     | all job control threads have been joined
[2026-02-02 12:31:44] 2026-02-02 11:31:14,413 | INFO     | all data control threads have been joined
[2026-02-02 12:31:44] 2026-02-02 11:31:14,450 | INFO     | all payload control threads have been joined
[2026-02-02 12:31:44] 2026-02-02 11:31:14,888 | INFO     | [job] retrieve thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:14,889 | INFO     | [job] queue monitor thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:14,889 | INFO     | [job] job monitor thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:15,007 | INFO     | [data] copytool_in thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:15,299 | INFO     | [payload] validate_post thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:15,307 | INFO     | [job] control thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:15,418 | INFO     | [data] control thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:15,455 | INFO     | [payload] control thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:15,889 | INFO     | [data] copytool_out thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:15,894 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:16,210 | INFO     | [job] validate thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:16,298 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:16,316 | INFO     | [payload] failed_post thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:16,368 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:17,888 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:24,362 | INFO     | job.realtimelogging is not enabled
[2026-02-02 12:31:44] 2026-02-02 11:31:25,367 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 12:31:44] 2026-02-02 11:31:37,328 | INFO     | [monitor] cgroup control has ended
[2026-02-02 12:31:44] 2026-02-02 11:31:39,436 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140434595243840)>', '<ExcThread(monitor, started 140434240149248)>']
[2026-02-02 12:31:44] 2026-02-02 11:31:44,369 | INFO     | PID=1050142 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 12:31:44] 2026-02-02 11:31:44,369 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 12:31:44] 2026-02-02 11:31:44,369 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 12:31:44] 2026-02-02 11:31:44,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 12:31:44] 2026-02-02 11:31:44,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 12:31:44] 2026-02-02 11:31:44,369 | INFO     | [monitor] control thread has ended
[2026-02-02 12:31:44] 2026-02-02 11:31:44,462 | INFO     | all workflow threads have been joined
[2026-02-02 12:31:44] 2026-02-02 11:31:44,462 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 12:31:44] 2026-02-02 11:31:44,462 | INFO     | traces error code: 0
[2026-02-02 12:31:44] 2026-02-02 11:31:44,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 12:31:44] 2026-02-02 11:31:44,515 [wrapper] ==== pilot stdout END ====
[2026-02-02 12:31:44] 2026-02-02 11:31:44,518 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 12:31:44] 2026-02-02 11:31:44,520 [wrapper] pilotpid: 1050142
[2026-02-02 12:31:44] 2026-02-02 11:31:44,523 [wrapper] Pilot exit status: 0
[2026-02-02 12:31:44] 2026-02-02 11:31:44,530 [wrapper] pandaids: 6992459649
[2026-02-02 12:31:44] 2026-02-02 11:31:44,549 [wrapper] cleanup supervisor_pilot 1062208 1050143
[2026-02-02 12:31:44] 2026-02-02 11:31:44,552 [wrapper] Test setup, not cleaning
[2026-02-02 12:31:44] 2026-02-02 11:31:44,554 [wrapper] apfmon messages muted
[2026-02-02 12:31:44] 2026-02-02 11:31:44,557 [wrapper] ==== wrapper stdout END ====
[2026-02-02 12:31:44] 2026-02-02 11:31:44,559 [wrapper] ==== wrapper stderr END ====
[2026-02-02 12:31:44]  *** Error codes and diagnostics ***
[2026-02-02 12:31:44]     "exeErrorCode": 0,
[2026-02-02 12:31:44]     "exeErrorDiag": "",
[2026-02-02 12:31:44]     "pilotErrorCode": 0,
[2026-02-02 12:31:44]     "pilotErrorDiag": "",
[2026-02-02 12:31:44]  *** Listing of results directory ***
[2026-02-02 12:31:44] total 902428
[2026-02-02 12:31:44] -rwx------ 1 boinc boinc     36322 Feb  1 18:37 runpilot2-wrapper.sh
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc      5111 Feb  1 18:42 queuedata.json
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc    584422 Feb  1 18:42 pilot3.tar.gz
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc       100 Feb  2 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 12:31:44] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 10:36 run_atlas
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc       105 Feb  2 10:36 job.xml
[2026-02-02 12:31:44] -rw-r--r-- 2 boinc boinc 656446823 Feb  2 10:36 EVNT.48431111._000011.pool.root.1
[2026-02-02 12:31:44] -rw-r--r-- 2 boinc boinc    597765 Feb  2 10:36 input.tar.gz
[2026-02-02 12:31:44] -rw-r--r-- 2 boinc boinc     15845 Feb  2 10:36 start_atlas.sh
[2026-02-02 12:31:44] drwxrwx--x 2 boinc boinc      4096 Feb  2 10:36 shared
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc         0 Feb  2 10:36 boinc_setup_complete
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc      6447 Feb  2 10:36 init_data.xml
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc         0 Feb  2 10:36 boinc_lockfile
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc      2542 Feb  2 10:36 pandaJob.out
[2026-02-02 12:31:44] -rw------- 1 boinc boinc   1008375 Feb  2 10:36 agis_schedconf.cvmfs.json
[2026-02-02 12:31:44] -rw------- 1 boinc boinc   1511668 Feb  2 10:36 agis_ddmendpoints.agis.ALL.json
[2026-02-02 12:31:44] -rw------- 1 boinc boinc       428 Feb  2 10:36 workernode_map.json
[2026-02-02 12:31:44] drwx------ 5 boinc boinc      4096 Feb  2 10:36 pilot3
[2026-02-02 12:31:44] -rw------- 1 boinc boinc 261182537 Feb  2 12:30 HITS.48431113._000505.pool.root.1
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc       530 Feb  2 12:30 boinc_task_state.xml
[2026-02-02 12:31:44] -rw------- 1 boinc boinc      1023 Feb  2 12:31 memory_monitor_summary.json
[2026-02-02 12:31:44] -rw------- 1 boinc boinc        95 Feb  2 12:31 pilot_heartbeat.json
[2026-02-02 12:31:44] -rw------- 1 boinc boinc    274049 Feb  2 12:31 log.48431113._000505.job.log.tgz.1
[2026-02-02 12:31:44] -rw------- 1 boinc boinc      6313 Feb  2 12:31 heartbeat.json
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc      8192 Feb  2 12:31 boinc_mmap_file
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc        27 Feb  2 12:31 wrapper_checkpoint.txt
[2026-02-02 12:31:44] -rw------- 1 boinc boinc      4820 Feb  2 12:31 pilotlog.txt
[2026-02-02 12:31:44] -rw------- 1 boinc boinc    990968 Feb  2 12:31 log.48431113._000505.job.log.1
[2026-02-02 12:31:44] -rw------- 1 boinc boinc       357 Feb  2 12:31 output.list
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc       620 Feb  2 12:31 runtime_log
[2026-02-02 12:31:44] -rw------- 1 boinc boinc   1280000 Feb  2 12:31 result.tar.gz
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc      8916 Feb  2 12:31 runtime_log.err
[2026-02-02 12:31:44] -rw------- 1 boinc boinc       661 Feb  2 12:31 naqMDmfZq68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmuQKDmIdMINo.diag
[2026-02-02 12:31:44] -rw-r--r-- 1 boinc boinc     11003 Feb  2 12:31 stderr.txt
[2026-02-02 12:31:44] HITS file was successfully produced:
[2026-02-02 12:31:44] -rw------- 1 boinc boinc 261182537 Feb  2 12:30 shared/HITS.pool.root.1
[2026-02-02 12:31:44]  *** Contents of shared directory: ***
[2026-02-02 12:31:44] total 897988
[2026-02-02 12:31:44] -rw-r--r-- 2 boinc boinc 656446823 Feb  2 10:36 ATLAS.root_0
[2026-02-02 12:31:44] -rw-r--r-- 2 boinc boinc    597765 Feb  2 10:36 input.tar.gz
[2026-02-02 12:31:44] -rw-r--r-- 2 boinc boinc     15845 Feb  2 10:36 start_atlas.sh
[2026-02-02 12:31:44] -rw------- 1 boinc boinc 261182537 Feb  2 12:30 HITS.pool.root.1
[2026-02-02 12:31:44] -rw------- 1 boinc boinc   1280000 Feb  2 12:31 result.tar.gz
12:31:46 (1046107): run_atlas exited; CPU time 19922.356462
12:31:46 (1046107): called boinc_finish(0)

</stderr_txt>
]]>

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