Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:51:18 (3388314): wrapper (7.7.26015): starting
10:51:18 (3388314): wrapper: running run_atlas (--nthreads 3)
[2026-02-02 10:51:18] Arguments: --nthreads 3
[2026-02-02 10:51:18] Threads: 3
[2026-02-02 10:51:18] Checking for CVMFS
[2026-02-02 10:51:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 10:51:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 10:51:19] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 10:51:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 10:51:19] 2.9.2.0 2679616 4970 69164 155781 2 50 18822559 36864000 0 130560 0 2009780 99.984 171366 18572 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 10:51:19] CVMFS is ok
[2026-02-02 10:51:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 10:51:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 10:51:19] Further information can be found at the LHC@home message board.
[2026-02-02 10:51:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 10:51:19] Checking for apptainer binary...
[2026-02-02 10:51:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 10:51:19] Running /usr/bin/apptainer --version
[2026-02-02 10:51:19] apptainer version 1.4.1-1.1
[2026-02-02 10:51:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 10:51:19] magicA244b
[2026-02-02 10:51:19] apptainer works
[2026-02-02 10:51:19] Set ATHENA_PROC_NUMBER=3
[2026-02-02 10:51:19] Set ATHENA_CORE_NUMBER=3
[2026-02-02 10:51:19] Starting ATLAS job with PandaID=6992471541
[2026-02-02 10:51:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 12:29:47]  *** The last 200 lines of the pilot log: ***
[2026-02-02 12:29:47] 2026-02-02 11:29:14,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 12:29:47] 2026-02-02 11:29:14,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 12:29:47] 2026-02-02 11:29:14,887 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 12:29:47] 2026-02-02 11:29:14,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 12:29:47] 2026-02-02 11:29:14,887 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 12:29:47] 2026-02-02 11:29:14,887 | INFO     | job 6992471541 has completed (purged errors)
[2026-02-02 12:29:47] 2026-02-02 11:29:14,887 | INFO     | overall cleanup function is called
[2026-02-02 12:29:47] 2026-02-02 11:29:15,893 | INFO     | --- collectZombieJob: --- 10, [3396784]
[2026-02-02 12:29:47] 2026-02-02 11:29:15,893 | INFO     | zombie collector waiting for pid 3396784
[2026-02-02 12:29:47] 2026-02-02 11:29:15,894 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 12:29:47] 2026-02-02 11:29:15,894 | INFO     | collected zombie processes
[2026-02-02 12:29:47] 2026-02-02 11:29:15,894 | INFO     | will attempt to kill all subprocesses of pid=3396784
[2026-02-02 12:29:47] 2026-02-02 11:29:15,929 | INFO     | process IDs to be killed: [3396784] (in reverse order)
[2026-02-02 12:29:47] 2026-02-02 11:29:15,953 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 12:29:47] 2026-02-02 11:29:15,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 12:29:47] 2026-02-02 11:29:15,954 | INFO     | did not find any defunct processes belonging to 3396784
[2026-02-02 12:29:47] 2026-02-02 11:29:15,955 | INFO     | did not find any defunct processes belonging to 3396784
[2026-02-02 12:29:47] 2026-02-02 11:29:15,955 | INFO     | ready for new job
[2026-02-02 12:29:47] 2026-02-02 11:29:15,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 12:29:47] 2026-02-02 11:29:15,955 | INFO     | **************************************
[2026-02-02 12:29:47] 2026-02-02 11:29:15,955 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 12:29:47] 2026-02-02 11:29:15,956 | INFO     | **************************************
[2026-02-02 12:29:47] 2026-02-02 11:29:15,956 | INFO     | 
[2026-02-02 12:29:47] 2026-02-02 11:29:15,956 | INFO     | architecture information:
[2026-02-02 12:29:47] 2026-02-02 11:29:15,956 | INFO     | executing command: cat /etc/os-release
[2026-02-02 12:29:47] 2026-02-02 11:29:15,965 | INFO     | cat /etc/os-release:
[2026-02-02 12:29:47] NAME="CentOS Linux"
[2026-02-02 12:29:47] VERSION="7 (Core)"
[2026-02-02 12:29:47] ID="centos"
[2026-02-02 12:29:47] ID_LIKE="rhel fedora"
[2026-02-02 12:29:47] VERSION_ID="7"
[2026-02-02 12:29:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 12:29:47] ANSI_COLOR="0;31"
[2026-02-02 12:29:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 12:29:47] HOME_URL="https://www.centos.org/"
[2026-02-02 12:29:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 12:29:47] 
[2026-02-02 12:29:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 12:29:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 12:29:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 12:29:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 12:29:47] 
[2026-02-02 12:29:47] 2026-02-02 11:29:15,966 | INFO     | **************************************
[2026-02-02 12:29:47] 2026-02-02 11:29:16,467 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 12:29:47] 2026-02-02 11:29:16,479 | INFO     | sufficient remaining disk space (338172051456 B)
[2026-02-02 12:29:47] 2026-02-02 11:29:16,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 12:29:47] 2026-02-02 11:29:16,480 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 12:29:47] 2026-02-02 11:29:16,480 | INFO     | update_server=False
[2026-02-02 12:29:47] 2026-02-02 11:29:16,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 12:29:47] 2026-02-02 11:29:16,480 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 12:29:47] 2026-02-02 11:29:16,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 12:29:47] 2026-02-02 11:29:16,804 | INFO     | all data control threads have been joined
[2026-02-02 12:29:47] 2026-02-02 11:29:16,870 | INFO     | all job control threads have been joined
[2026-02-02 12:29:47] 2026-02-02 11:29:17,102 | INFO     | all payload control threads have been joined
[2026-02-02 12:29:47] 2026-02-02 11:29:17,486 | INFO     | [job] retrieve thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:17,487 | INFO     | [job] queue monitor thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:17,563 | INFO     | [payload] failed_post thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:17,621 | WARNING  | process 3396784 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 12:29:47] 2026-02-02 11:29:17,647 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 12:29:47] 2026-02-02 11:29:17,677 | INFO     | number of running child processes to parent process 3396784: 1
[2026-02-02 12:29:47] 2026-02-02 11:29:17,678 | INFO     | maximum number of monitored processes: 6
[2026-02-02 12:29:47] 2026-02-02 11:29:17,678 | INFO     | aborting job monitoring since job object (job id=6992471541) has expired
[2026-02-02 12:29:47] 2026-02-02 11:29:17,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 12:29:47] 2026-02-02 11:29:17,678 | INFO     | will abort loop
[2026-02-02 12:29:47] 2026-02-02 11:29:17,810 | INFO     | [data] control thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:17,874 | INFO     | [job] control thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:17,905 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:17,948 | INFO     | [job] validate thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:18,108 | INFO     | [payload] control thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:18,220 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:18,230 | INFO     | [payload] validate_post thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:18,486 | INFO     | [data] copytool_out thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:18,531 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:18,616 | INFO     | [data] copytool_in thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:18,683 | INFO     | [job] job monitor thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:19,073 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 12:29:47] 2026-02-02 11:29:23,080 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:27,306 | INFO     | job.realtimelogging is not enabled
[2026-02-02 12:29:47] 2026-02-02 11:29:28,312 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 12:29:47] 2026-02-02 11:29:41,025 | INFO     | [monitor] cgroup control has ended
[2026-02-02 12:29:47] 2026-02-02 11:29:42,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623249766208)>', '<ExcThread(monitor, started 140622455367424)>']
[2026-02-02 12:29:47] 2026-02-02 11:29:46,939 | INFO     | PID=3392362 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 12:29:47] 2026-02-02 11:29:46,939 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 12:29:47] 2026-02-02 11:29:46,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 12:29:47] 2026-02-02 11:29:46,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 12:29:47] 2026-02-02 11:29:46,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 12:29:47] 2026-02-02 11:29:46,939 | INFO     | [monitor] control thread has ended
[2026-02-02 12:29:47] 2026-02-02 11:29:47,536 | INFO     | all workflow threads have been joined
[2026-02-02 12:29:47] 2026-02-02 11:29:47,536 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 12:29:47] 2026-02-02 11:29:47,537 | INFO     | traces error code: 0
[2026-02-02 12:29:47] 2026-02-02 11:29:47,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 12:29:47] 2026-02-02 11:29:47,583 [wrapper] ==== pilot stdout END ====
[2026-02-02 12:29:47] 2026-02-02 11:29:47,586 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 12:29:47] 2026-02-02 11:29:47,590 [wrapper] pilotpid: 3392362
[2026-02-02 12:29:47] 2026-02-02 11:29:47,592 [wrapper] Pilot exit status: 0
[2026-02-02 12:29:47] 2026-02-02 11:29:47,600 [wrapper] pandaids: 6992471541
[2026-02-02 12:29:47] 2026-02-02 11:29:47,616 [wrapper] cleanup supervisor_pilot 3402292 3392363
[2026-02-02 12:29:47] 2026-02-02 11:29:47,618 [wrapper] Test setup, not cleaning
[2026-02-02 12:29:47] 2026-02-02 11:29:47,621 [wrapper] apfmon messages muted
[2026-02-02 12:29:47] 2026-02-02 11:29:47,624 [wrapper] ==== wrapper stdout END ====
[2026-02-02 12:29:47] 2026-02-02 11:29:47,626 [wrapper] ==== wrapper stderr END ====
[2026-02-02 12:29:47]  *** Error codes and diagnostics ***
[2026-02-02 12:29:47]     "exeErrorCode": 0,
[2026-02-02 12:29:47]     "exeErrorDiag": "",
[2026-02-02 12:29:47]     "pilotErrorCode": 0,
[2026-02-02 12:29:47]     "pilotErrorDiag": "",
[2026-02-02 12:29:47]  *** Listing of results directory ***
[2026-02-02 12:29:47] total 674196
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc    584422 Feb  1 18:33 pilot3.tar.gz
[2026-02-02 12:29:47] -rwx------ 1 boinc boinc     36322 Feb  1 18:34 runpilot2-wrapper.sh
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc      5111 Feb  1 18:35 queuedata.json
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc       100 Feb  2 10:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 12:29:47] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 10:51 run_atlas
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc       105 Feb  2 10:51 job.xml
[2026-02-02 12:29:47] -rw-r--r-- 2 boinc boinc 496071232 Feb  2 10:51 EVNT.48318016._000013.pool.root.1
[2026-02-02 12:29:47] -rw-r--r-- 2 boinc boinc    597749 Feb  2 10:51 input.tar.gz
[2026-02-02 12:29:47] -rw-r--r-- 2 boinc boinc     15845 Feb  2 10:51 start_atlas.sh
[2026-02-02 12:29:47] drwxrwx--x 2 boinc boinc      4096 Feb  2 10:51 shared
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc         0 Feb  2 10:51 boinc_setup_complete
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc      6199 Feb  2 10:51 init_data.xml
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc         0 Feb  2 10:51 boinc_lockfile
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc      2518 Feb  2 10:51 pandaJob.out
[2026-02-02 12:29:47] -rw------- 1 boinc boinc   1008375 Feb  2 10:51 agis_schedconf.cvmfs.json
[2026-02-02 12:29:47] -rw------- 1 boinc boinc   1511668 Feb  2 10:51 agis_ddmendpoints.agis.ALL.json
[2026-02-02 12:29:47] -rw------- 1 boinc boinc       430 Feb  2 10:51 workernode_map.json
[2026-02-02 12:29:47] drwx------ 5 boinc boinc      4096 Feb  2 10:51 pilot3
[2026-02-02 12:29:47] -rw------- 1 boinc boinc 188058779 Feb  2 12:28 HITS.48318018._000676.pool.root.1
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc       530 Feb  2 12:28 boinc_task_state.xml
[2026-02-02 12:29:47] -rw------- 1 boinc boinc        95 Feb  2 12:28 pilot_heartbeat.json
[2026-02-02 12:29:47] -rw------- 1 boinc boinc      1020 Feb  2 12:29 memory_monitor_summary.json
[2026-02-02 12:29:47] -rw------- 1 boinc boinc    305194 Feb  2 12:29 log.48318018._000676.job.log.tgz.1
[2026-02-02 12:29:47] -rw------- 1 boinc boinc      6319 Feb  2 12:29 heartbeat.json
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc      8192 Feb  2 12:29 boinc_mmap_file
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc        27 Feb  2 12:29 wrapper_checkpoint.txt
[2026-02-02 12:29:47] -rw------- 1 boinc boinc      5344 Feb  2 12:29 pilotlog.txt
[2026-02-02 12:29:47] -rw------- 1 boinc boinc    851071 Feb  2 12:29 log.48318018._000676.job.log.1
[2026-02-02 12:29:47] -rw------- 1 boinc boinc       357 Feb  2 12:29 output.list
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc       620 Feb  2 12:29 runtime_log
[2026-02-02 12:29:47] -rw------- 1 boinc boinc   1177600 Feb  2 12:29 result.tar.gz
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc      8916 Feb  2 12:29 runtime_log.err
[2026-02-02 12:29:47] -rw------- 1 boinc boinc       661 Feb  2 12:29 XGvLDmPWq68n9Rq4apOajLDm4fhM0noT9bVooX4SDmVOQKDmTzZUOo.diag
[2026-02-02 12:29:47] -rw-r--r-- 1 boinc boinc     12045 Feb  2 12:29 stderr.txt
[2026-02-02 12:29:47] HITS file was successfully produced:
[2026-02-02 12:29:47] -rw------- 1 boinc boinc 188058779 Feb  2 12:28 shared/HITS.pool.root.1
[2026-02-02 12:29:47]  *** Contents of shared directory: ***
[2026-02-02 12:29:47] total 669860
[2026-02-02 12:29:47] -rw-r--r-- 2 boinc boinc 496071232 Feb  2 10:51 ATLAS.root_0
[2026-02-02 12:29:47] -rw-r--r-- 2 boinc boinc    597749 Feb  2 10:51 input.tar.gz
[2026-02-02 12:29:47] -rw-r--r-- 2 boinc boinc     15845 Feb  2 10:51 start_atlas.sh
[2026-02-02 12:29:47] -rw------- 1 boinc boinc 188058779 Feb  2 12:28 HITS.pool.root.1
[2026-02-02 12:29:47] -rw------- 1 boinc boinc   1177600 Feb  2 12:29 result.tar.gz
12:29:48 (3388314): run_atlas exited; CPU time 16904.686013
12:29:48 (3388314): called boinc_finish(0)

</stderr_txt>
]]>

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