Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:36:59 (19510): wrapper (7.7.26015): starting
16:36:59 (19510): wrapper: running run_atlas (--nthreads 12)
[2026-02-01 16:36:59] Arguments: --nthreads 12
[2026-02-01 16:36:59] Threads: 12
[2026-02-01 16:36:59] Checking for CVMFS
[2026-02-01 16:37:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 16:37:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 16:37:00] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 16:37:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 16:37:00] 2.11.2.0 3103 174686 102160 155763 1 52 14066522 20275200 1 130560 0 74224358 99.921 9294626 30536 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-01 16:37:00] CVMFS is ok
[2026-02-01 16:37:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 16:37:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 16:37:00] Further information can be found at the LHC@home message board.
[2026-02-01 16:37:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 16:37:00] Checking for apptainer binary...
[2026-02-01 16:37:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 16:37:00] Running /usr/bin/apptainer --version
[2026-02-01 16:37:00] apptainer version 1.3.2-1.el7
[2026-02-01 16:37:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 16:37:01] c-115-41.aglt2.org
[2026-02-01 16:37:01] apptainer works
[2026-02-01 16:37:01] Set ATHENA_PROC_NUMBER=12
[2026-02-01 16:37:01] Set ATHENA_CORE_NUMBER=12
[2026-02-01 16:37:01] Starting ATLAS job with PandaID=6996178118
[2026-02-01 16:37:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 17:44:42]  *** The last 200 lines of the pilot log: ***
[2026-02-01 17:44:42]  is_tar=False
[2026-02-01 17:44:42]  lfn=log.48317931._011672.job.log.tgz.1
[2026-02-01 17:44:42]  mtime=0
[2026-02-01 17:44:42]  protocol_id=None
[2026-02-01 17:44:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-01 17:44:42]  replicas=None
[2026-02-01 17:44:42]  scope=mc23_13p6TeV
[2026-02-01 17:44:42]  status=None
[2026-02-01 17:44:42]  status_code=0
[2026-02-01 17:44:42]  storage_token=
[2026-02-01 17:44:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6996178118/log.48317931._011672.job.log.tgz.1
[2026-02-01 17:44:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/9c/log.48317931._011672.job.log.tgz.1
[2026-02-01 17:44:42]  workdir=None
[2026-02-01 17:44:42] ]
[2026-02-01 17:44:42] 2026-02-01 22:44:03,965 | INFO     | transferring file log.48317931._011672.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6996178118/log.48317931._011672.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-01 17:44:42] 2026-02-01 22:44:03,965 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6996178118/log.48317931._011672.job.log.tgz.1 /tmp/boinchome/slots/0/log.48317931._011672.job
[2026-02-01 17:44:42] 2026-02-01 22:44:03,987 | INFO     | adding to output.list: log.48317931._011672.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/9c/log.48317931._011672.job.log.tg
[2026-02-01 17:44:42] 2026-02-01 22:44:03,988 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-01 17:44:42] 2026-02-01 22:44:03,988 | INFO     | summary of transferred files:
[2026-02-01 17:44:42] 2026-02-01 22:44:03,988 | INFO     |  -- lfn=log.48317931._011672.job.log.tgz.1, status_code=0, status=transferred
[2026-02-01 17:44:42] 2026-02-01 22:44:03,988 | INFO     | stage-out finished correctly
[2026-02-01 17:44:42] 2026-02-01 22:44:04,576 | INFO     | time since job start (4004s) is within the limit (349056.0s)
[2026-02-01 17:44:42] 2026-02-01 22:44:06,582 | INFO     | time since job start (4006s) is within the limit (349056.0s)
[2026-02-01 17:44:42] 2026-02-01 22:44:07,554 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-01 17:44:42] 2026-02-01 22:44:08,608 | INFO     | time since job start (4008s) is within the limit (349056.0s)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,137 | WARNING  | process 27735 can no longer be monitored (due to stat problems) - aborting
[2026-02-01 17:44:42] 2026-02-01 22:44:09,137 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6996178118/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,218 | INFO     | number of running child processes to parent process 27735: 1
[2026-02-01 17:44:42] 2026-02-01 22:44:09,218 | INFO     | maximum number of monitored processes: 6
[2026-02-01 17:44:42] 2026-02-01 22:44:09,812 | INFO     | job 6996178118 has state=finished
[2026-02-01 17:44:42] 2026-02-01 22:44:09,813 | INFO     | preparing for final server update for job 6996178118 in state='finished'
[2026-02-01 17:44:42] 2026-02-01 22:44:09,813 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6996178118/jobReport.json
[2026-02-01 17:44:42] 2026-02-01 22:44:09,816 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-01 17:44:42] 2026-02-01 22:44:09,816 | INFO     | this job has now completed (state=finished)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,816 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,816 | INFO     | log transfer has been attempted: DONE
[2026-02-01 17:44:42] 2026-02-01 22:44:09,817 | INFO     | job 6996178118 has finished - writing final server update
[2026-02-01 17:44:42] 2026-02-01 22:44:09,817 | INFO     | total number of processed events: 400 (read)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,819 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6996178118/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,819 | INFO     | extracted standard info from prmon json
[2026-02-01 17:44:42] 2026-02-01 22:44:09,819 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 17:44:42] 2026-02-01 22:44:09,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 17:44:42] 2026-02-01 22:44:09,820 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 17:44:42] 2026-02-01 22:44:09,820 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 17:44:42] 2026-02-01 22:44:09,821 | INFO     | fitting pss+swap vs Time
[2026-02-01 17:44:42] 2026-02-01 22:44:09,821 | INFO     | sum of square deviations: 63666310.0
[2026-02-01 17:44:42] 2026-02-01 22:44:09,822 | INFO     | sum of deviations: -6784716521.0
[2026-02-01 17:44:42] 2026-02-01 22:44:09,822 | INFO     | mean x: 1769983938.0
[2026-02-01 17:44:42] 2026-02-01 22:44:09,822 | INFO     | mean y: 2841074.779661017
[2026-02-01 17:44:42] 2026-02-01 22:44:09,822 | INFO     | intersect: 188624409782.83325
[2026-02-01 17:44:42] 2026-02-01 22:44:09,822 | INFO     | chi2: 0.04580456568876216
[2026-02-01 17:44:42] 2026-02-01 22:44:09,822 | INFO     | current memory leak: -106.57 B/s (using 59 data points, chi2=0.05)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,822 | INFO     | could have reported an average CPU frequency of 1817 MHz (6 samples)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | ..............................
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | . Timing measurements:
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | . get job = 0 s
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | . initial setup = 7 s
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | . payload setup = 7 s
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | . stage-in = 0 s
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | . payload execution = 3980 s
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | . stage-out = 0 s
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | . log creation = 0 s
[2026-02-01 17:44:42] 2026-02-01 22:44:09,823 | INFO     | ..............................
[2026-02-01 17:44:42] 2026-02-01 22:44:09,893 | INFO     | 
[2026-02-01 17:44:42] 2026-02-01 22:44:09,893 | INFO     | job summary report
[2026-02-01 17:44:42] 2026-02-01 22:44:09,894 | INFO     | --------------------------------------------------
[2026-02-01 17:44:42] 2026-02-01 22:44:09,894 | INFO     | PanDA job id: 6996178118
[2026-02-01 17:44:42] 2026-02-01 22:44:09,894 | INFO     | task id: 48317931
[2026-02-01 17:44:42] 2026-02-01 22:44:09,894 | INFO     | errors: (none)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,894 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 17:44:42] 2026-02-01 22:44:09,894 | INFO     | pilot state: finished 
[2026-02-01 17:44:42] 2026-02-01 22:44:09,895 | INFO     | transexitcode: 0
[2026-02-01 17:44:42] 2026-02-01 22:44:09,895 | INFO     | exeerrorcode: 0
[2026-02-01 17:44:42] 2026-02-01 22:44:09,895 | INFO     | exeerrordiag: 
[2026-02-01 17:44:42] 2026-02-01 22:44:09,895 | INFO     | exitcode: 0
[2026-02-01 17:44:42] 2026-02-01 22:44:09,895 | INFO     | exitmsg: OK
[2026-02-01 17:44:42] 2026-02-01 22:44:09,895 | INFO     | cpuconsumptiontime: 42371 s
[2026-02-01 17:44:42] 2026-02-01 22:44:09,896 | INFO     | nevents: 400
[2026-02-01 17:44:42] 2026-02-01 22:44:09,896 | INFO     | neventsw: 0
[2026-02-01 17:44:42] 2026-02-01 22:44:09,896 | INFO     | pid: 27735
[2026-02-01 17:44:42] 2026-02-01 22:44:09,896 | INFO     | pgrp: 27735
[2026-02-01 17:44:42] 2026-02-01 22:44:09,896 | INFO     | corecount: 12
[2026-02-01 17:44:42] 2026-02-01 22:44:09,896 | INFO     | event service: False
[2026-02-01 17:44:42] 2026-02-01 22:44:09,897 | INFO     | sizes: {0: 2277726, 1: 2278187, 11: 2278187, 3992: 2312994, 3996: 2312994, 3998: 2313188}
[2026-02-01 17:44:42] 2026-02-01 22:44:09,897 | INFO     | --------------------------------------------------
[2026-02-01 17:44:42] 2026-02-01 22:44:09,897 | INFO     | 
[2026-02-01 17:44:42] 2026-02-01 22:44:09,897 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-01 17:44:42] 2026-02-01 22:44:09,922 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,922 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,922 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,922 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,923 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,923 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,923 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,923 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,923 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,924 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,924 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,924 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,924 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,924 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,924 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,925 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,925 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,925 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 17:44:42] 2026-02-01 22:44:09,925 | INFO     | job 6996178118 has completed (purged errors)
[2026-02-01 17:44:42] 2026-02-01 22:44:09,926 | INFO     | overall cleanup function is called
[2026-02-01 17:44:42] 2026-02-01 22:44:10,934 | INFO     | --- collectZombieJob: --- 10, [27735]
[2026-02-01 17:44:42] 2026-02-01 22:44:10,934 | INFO     | zombie collector waiting for pid 27735
[2026-02-01 17:44:42] 2026-02-01 22:44:10,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 17:44:42] 2026-02-01 22:44:10,934 | INFO     | collected zombie processes
[2026-02-01 17:44:42] 2026-02-01 22:44:10,935 | INFO     | will attempt to kill all subprocesses of pid=27735
[2026-02-01 17:44:42] 2026-02-01 22:44:11,016 | INFO     | process IDs to be killed: [27735] (in reverse order)
[2026-02-01 17:44:42] 2026-02-01 22:44:11,067 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 17:44:42] 2026-02-01 22:44:11,068 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 17:44:42] 2026-02-01 22:44:11,071 | INFO     | did not find any defunct processes belonging to 27735
[2026-02-01 17:44:42] 2026-02-01 22:44:11,074 | INFO     | did not find any defunct processes belonging to 27735
[2026-02-01 17:44:42] 2026-02-01 22:44:11,074 | INFO     | ready for new job
[2026-02-01 17:44:42] 2026-02-01 22:44:11,074 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 17:44:42] 2026-02-01 22:44:11,075 | INFO     | **************************************
[2026-02-01 17:44:42] 2026-02-01 22:44:11,076 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 17:44:42] 2026-02-01 22:44:11,076 | INFO     | **************************************
[2026-02-01 17:44:42] 2026-02-01 22:44:11,076 | INFO     | 
[2026-02-01 17:44:42] 2026-02-01 22:44:11,077 | INFO     | architecture information:
[2026-02-01 17:44:42] 2026-02-01 22:44:11,077 | INFO     | executing command: cat /etc/os-release
[2026-02-01 17:44:42] 2026-02-01 22:44:11,092 | INFO     | cat /etc/os-release:
[2026-02-01 17:44:42] NAME="CentOS Linux"
[2026-02-01 17:44:42] VERSION="7 (Core)"
[2026-02-01 17:44:42] ID="centos"
[2026-02-01 17:44:42] ID_LIKE="rhel fedora"
[2026-02-01 17:44:42] VERSION_ID="7"
[2026-02-01 17:44:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 17:44:42] ANSI_COLOR="0;31"
[2026-02-01 17:44:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 17:44:42] HOME_URL="https://www.centos.org/"
[2026-02-01 17:44:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 17:44:42] 
[2026-02-01 17:44:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 17:44:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 17:44:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 17:44:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 17:44:42] 
[2026-02-01 17:44:42] 2026-02-01 22:44:11,092 | INFO     | **************************************
[2026-02-01 17:44:42] 2026-02-01 22:44:11,595 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-01 17:44:42] 2026-02-01 22:44:11,612 | INFO     | sufficient remaining disk space (18003001344 B)
[2026-02-01 17:44:42] 2026-02-01 22:44:11,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 17:44:42] 2026-02-01 22:44:11,613 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 17:44:42] 2026-02-01 22:44:11,613 | INFO     | update_server=False
[2026-02-01 17:44:42] 2026-02-01 22:44:11,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 17:44:42] 2026-02-01 22:44:11,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 17:44:42] 2026-02-01 22:44:11,721 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-01 17:44:42] 2026-02-01 22:44:11,722 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-01 17:44:42] 2026-02-01 22:44:11,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 17:44:42] 2026-02-01 22:44:11,722 | INFO     | will abort loop
[2026-02-01 17:44:42] 2026-02-01 22:44:11,989 | INFO     | all payload control threads have been joined
[2026-02-01 17:44:42] 2026-02-01 22:44:12,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 17:44:42] 2026-02-01 22:44:12,561 | INFO     | all job control threads have been joined
[2026-02-01 17:44:42] 2026-02-01 22:44:12,603 | INFO     | all data control threads have been joined
[2026-02-01 17:44:42] 2026-02-01 22:44:12,619 | INFO     | [job] retrieve thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:12,619 | INFO     | [job] queue monitor thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:12,728 | INFO     | [job] job monitor thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:12,995 | INFO     | [payload] control thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:13,166 | INFO     | [job] validate thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:13,199 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:13,307 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:13,332 | INFO     | [payload] failed_post thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:13,435 | INFO     | [data] copytool_in thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:13,480 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:13,567 | INFO     | [job] control thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:13,608 | INFO     | [data] control thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:13,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 17:44:42] 2026-02-01 22:44:13,894 | INFO     | [payload] validate_post thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:14,081 | INFO     | [data] copytool_out thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:17,637 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:22,515 | INFO     | job.realtimelogging is not enabled
[2026-02-01 17:44:42] 2026-02-01 22:44:23,520 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 17:44:42] 2026-02-01 22:44:26,841 | INFO     | [monitor] cgroup control has ended
[2026-02-01 17:44:42] 2026-02-01 22:44:28,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630344058688)>', '<ExcThread(monitor, started 140629728270080)>']
[2026-02-01 17:44:42] 2026-02-01 22:44:33,477 | INFO     | all workflow threads have been joined
[2026-02-01 17:44:42] 2026-02-01 22:44:33,477 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 17:44:42] 2026-02-01 22:44:33,478 | INFO     | traces error code: 0
[2026-02-01 17:44:42] 2026-02-01 22:44:33,478 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 17:44:42] 2026-02-01 22:44:41,807 | INFO     | PID=23237 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-01 17:44:42] 2026-02-01 22:44:41,807 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 17:44:42] 2026-02-01 22:44:41,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 17:44:42] 2026-02-01 22:44:41,808 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 17:44:42] 2026-02-01 22:44:41,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 17:44:42] 2026-02-01 22:44:41,808 | INFO     | [monitor] control thread has ended
[2026-02-01 17:44:42] 2026-02-01 22:44:41,896 [wrapper] ==== pilot stdout END ====
[2026-02-01 17:44:42] 2026-02-01 22:44:41,900 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 17:44:42] 2026-02-01 22:44:41,904 [wrapper] pilotpid: 23237
[2026-02-01 17:44:42] 2026-02-01 22:44:41,907 [wrapper] Pilot exit status: 0
[2026-02-01 17:44:42] 2026-02-01 22:44:41,923 [wrapper] pandaids: 6996178118
[2026-02-01 17:44:42] 2026-02-01 22:44:41,961 [wrapper] cleanup supervisor_pilot 19479 23238
[2026-02-01 17:44:42] 2026-02-01 22:44:41,965 [wrapper] Test setup, not cleaning
[2026-02-01 17:44:42] 2026-02-01 22:44:41,969 [wrapper] apfmon messages muted
[2026-02-01 17:44:42] 2026-02-01 22:44:41,972 [wrapper] ==== wrapper stdout END ====
[2026-02-01 17:44:42] 2026-02-01 22:44:41,976 [wrapper] ==== wrapper stderr END ====
[2026-02-01 17:44:42]  *** Error codes and diagnostics ***
[2026-02-01 17:44:42]     "exeErrorCode": 0,
[2026-02-01 17:44:42]     "exeErrorDiag": "",
[2026-02-01 17:44:42]     "pilotErrorCode": 0,
[2026-02-01 17:44:42]     "pilotErrorDiag": "",
[2026-02-01 17:44:42]  *** Listing of results directory ***
[2026-02-01 17:44:42] total 678212
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas    584422 Feb  1 12:33 pilot3.tar.gz
[2026-02-01 17:44:42] -rwx------ 1 boincer umatlas     36322 Feb  1 12:34 runpilot2-wrapper.sh
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas      5111 Feb  1 12:35 queuedata.json
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas       100 Feb  1 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 17:44:42] -rwxr-xr-x 1 boincer umatlas      7986 Feb  1 16:36 run_atlas
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas       105 Feb  1 16:36 job.xml
[2026-02-01 17:44:42] -rw-r--r-- 2 boincer umatlas 505818579 Feb  1 16:36 EVNT.48317929._000172.pool.root.1
[2026-02-01 17:44:42] -rw-r--r-- 2 boincer umatlas     15845 Feb  1 16:36 start_atlas.sh
[2026-02-01 17:44:42] drwxrwx--x 2 boincer umatlas      4096 Feb  1 16:36 shared
[2026-02-01 17:44:42] -rw-r--r-- 2 boincer umatlas    597763 Feb  1 16:36 input.tar.gz
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas         0 Feb  1 16:36 boinc_lockfile
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas      2510 Feb  1 16:37 pandaJob.out
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas        57 Feb  1 16:37 setup.sh.local
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas   1009765 Feb  1 16:37 agis_schedconf.cvmfs.json
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas   1511668 Feb  1 16:37 agis_ddmendpoints.agis.ALL.json
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas       434 Feb  1 16:37 workernode_map.json
[2026-02-01 17:44:42] drwx------ 5 boincer umatlas      4096 Feb  1 16:37 pilot3
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas      5954 Feb  1 17:40 init_data.xml
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas 182782736 Feb  1 17:43 HITS.48317931._011672.pool.root.1
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas       530 Feb  1 17:43 boinc_task_state.xml
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas      1045 Feb  1 17:44 memory_monitor_summary.json
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas    381798 Feb  1 17:44 log.48317931._011672.job.log.tgz.1
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas        95 Feb  1 17:44 pilot_heartbeat.json
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas      6411 Feb  1 17:44 heartbeat.json
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas      8192 Feb  1 17:44 boinc_mmap_file
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas        27 Feb  1 17:44 wrapper_checkpoint.txt
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas       745 Feb  1 17:44 pilotlog.txt
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas    589704 Feb  1 17:44 log.48317931._011672.job.log.1
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas       357 Feb  1 17:44 output.list
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas       620 Feb  1 17:44 runtime_log
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas    993280 Feb  1 17:44 result.tar.gz
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas      9343 Feb  1 17:44 runtime_log.err
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas       659 Feb  1 17:44 mBEODmCWq68n9Rq4apOajLDm4fhM0noT9bVooX4SDmCOQKDmTz6q3m.diag
[2026-02-01 17:44:42] -rw-r--r-- 1 boincer umatlas     21530 Feb  1 17:44 stderr.txt
[2026-02-01 17:44:42] HITS file was successfully produced:
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas 182782736 Feb  1 17:43 shared/HITS.pool.root.1
[2026-02-01 17:44:42]  *** Contents of shared directory: ***
[2026-02-01 17:44:42] total 674044
[2026-02-01 17:44:42] -rw-r--r-- 2 boincer umatlas 505818579 Feb  1 16:36 ATLAS.root_0
[2026-02-01 17:44:42] -rw-r--r-- 2 boincer umatlas     15845 Feb  1 16:36 start_atlas.sh
[2026-02-01 17:44:42] -rw-r--r-- 2 boincer umatlas    597763 Feb  1 16:36 input.tar.gz
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas 182782736 Feb  1 17:43 HITS.pool.root.1
[2026-02-01 17:44:42] -rw------- 1 boincer umatlas    993280 Feb  1 17:44 result.tar.gz
17:44:43 (19510): run_atlas exited; CPU time 42344.489873
17:44:43 (19510): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN