Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:28:29 (3704900): wrapper (7.7.26015): starting
17:28:29 (3704900): wrapper: running run_atlas (--nthreads 4)
[2026-02-02 17:28:29] Arguments: --nthreads 4
[2026-02-02 17:28:29] Threads: 4
[2026-02-02 17:28:29] Checking for CVMFS
[2026-02-02 17:28:29] No cvmfs_config command found, will try listing directly
[2026-02-02 17:28:29] CVMFS is ok
[2026-02-02 17:28:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 17:28:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 17:28:29] Further information can be found at the LHC@home message board.
[2026-02-02 17:28:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 17:28:29] Checking for apptainer binary...
[2026-02-02 17:28:29] which: no apptainer in ((null))
[2026-02-02 17:28:29] apptainer is not installed, using version from CVMFS
[2026-02-02 17:28:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 17:28:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2026-02-02 17:28:29] apptainer works
[2026-02-02 17:28:30] Set ATHENA_PROC_NUMBER=4
[2026-02-02 17:28:30] Set ATHENA_CORE_NUMBER=4
[2026-02-02 17:28:30] Starting ATLAS job with PandaID=6992353609
[2026-02-02 17:28:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 20:51:06]  *** The last 200 lines of the pilot log: ***
[2026-02-02 20:51:06] 2026-02-02 19:49:13,685 | INFO     | job 6992353609 has state=finished
[2026-02-02 20:51:06] 2026-02-02 19:49:13,685 | INFO     | preparing for final server update for job 6992353609 in state='finished'
[2026-02-02 20:51:06] 2026-02-02 19:49:13,685 | INFO     | reading metadata from: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6992353609/jobReport.json
[2026-02-02 20:51:06] 2026-02-02 19:49:13,688 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot32/slots/0/workernode_map.json
[2026-02-02 20:51:06] 2026-02-02 19:49:13,689 | INFO     | this job has now completed (state=finished)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,689 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,689 | INFO     | log transfer has been attempted: DONE
[2026-02-02 20:51:06] 2026-02-02 19:49:13,689 | INFO     | job 6992353609 has finished - writing final server update
[2026-02-02 20:51:06] 2026-02-02 19:49:13,689 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_382914/.job.ad'
[2026-02-02 20:51:06] 2026-02-02 19:49:13,690 | INFO     | total number of processed events: 400 (read)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,698 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6992353609/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,699 | INFO     | extracted standard info from prmon json
[2026-02-02 20:51:06] 2026-02-02 19:49:13,699 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 20:51:06] 2026-02-02 19:49:13,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 20:51:06] 2026-02-02 19:49:13,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 20:51:06] 2026-02-02 19:49:13,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 20:51:06] 2026-02-02 19:49:13,704 | INFO     | fitting pss+swap vs Time
[2026-02-02 20:51:06] 2026-02-02 19:49:13,705 | INFO     | sum of square deviations: 2370641658.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,706 | INFO     | sum of deviations: -75746490140.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,706 | INFO     | mean x: 1770055726.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,706 | INFO     | mean y: 2464038.2842639596
[2026-02-02 20:51:06] 2026-02-02 19:49:13,707 | INFO     | intersect: 56559096350.99863
[2026-02-02 20:51:06] 2026-02-02 19:49:13,707 | INFO     | chi2: 1.7632580227990735
[2026-02-02 20:51:06] 2026-02-02 19:49:13,707 | INFO     | sum of square deviations: 2194675568.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,709 | INFO     | sum of deviations: -72344213310.00003
[2026-02-02 20:51:06] 2026-02-02 19:49:13,709 | INFO     | mean x: 1770055573.5
[2026-02-02 20:51:06] 2026-02-02 19:49:13,709 | INFO     | mean y: 2466987.4791666665
[2026-02-02 20:51:06] 2026-02-02 19:49:13,709 | INFO     | intersect: 58349714228.46108
[2026-02-02 20:51:06] 2026-02-02 19:49:13,710 | INFO     | chi2: 1.7537334468782528
[2026-02-02 20:51:06] 2026-02-02 19:49:13,710 | INFO     | current chi2=1.7537334468782528 (change=0.5401691526519157 %)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,710 | INFO     | right removable region: 191
[2026-02-02 20:51:06] 2026-02-02 19:49:13,710 | INFO     | sum of square deviations: 2194675568.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,712 | INFO     | sum of deviations: -99217900560.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,712 | INFO     | mean x: 1770055878.5
[2026-02-02 20:51:06] 2026-02-02 19:49:13,712 | INFO     | mean y: 2484061.40625
[2026-02-02 20:51:06] 2026-02-02 19:49:13,712 | INFO     | intersect: 80023982773.71909
[2026-02-02 20:51:06] 2026-02-02 19:49:13,713 | INFO     | chi2: 0.41751777225027675
[2026-02-02 20:51:06] 2026-02-02 19:49:13,713 | INFO     | current chi2=0.41751777225027675 (change=76.32123223874572 %)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,713 | INFO     | sum of square deviations: 2027639878.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,715 | INFO     | sum of deviations: -94184234117.99998
[2026-02-02 20:51:06] 2026-02-02 19:49:13,715 | INFO     | mean x: 1770056031.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,715 | INFO     | mean y: 2479440.796791444
[2026-02-02 20:51:06] 2026-02-02 19:49:13,715 | INFO     | intersect: 82221897905.8354
[2026-02-02 20:51:06] 2026-02-02 19:49:13,716 | INFO     | chi2: 0.40973707606629367
[2026-02-02 20:51:06] 2026-02-02 19:49:13,716 | INFO     | current chi2=0.40973707606629367 (change=1.8635604760122697 %)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,716 | INFO     | left removable region: 20
[2026-02-02 20:51:06] 2026-02-02 19:49:13,716 | INFO     | sum of square deviations: 1550429070.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,717 | INFO     | sum of deviations: -75324348180.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,718 | INFO     | mean x: 1770056153.0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,718 | INFO     | mean y: 2468375.128654971
[2026-02-02 20:51:06] 2026-02-02 19:49:13,718 | INFO     | intersect: 85996938258.69667
[2026-02-02 20:51:06] 2026-02-02 19:49:13,718 | INFO     | chi2: 0.3914534053588235
[2026-02-02 20:51:06] 2026-02-02 19:49:13,719 | INFO     | current memory leak: -48.58 B/s (using 171 data points, chi2=0.39)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,719 | INFO     | could have reported an average CPU frequency of 2446 MHz (10 samples)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,719 | INFO     | ..............................
[2026-02-02 20:51:06] 2026-02-02 19:49:13,719 | INFO     | . Timing measurements:
[2026-02-02 20:51:06] 2026-02-02 19:49:13,720 | INFO     | . get job = 0 s
[2026-02-02 20:51:06] 2026-02-02 19:49:13,720 | INFO     | . initial setup = 5 s
[2026-02-02 20:51:06] 2026-02-02 19:49:13,720 | INFO     | . payload setup = 5 s
[2026-02-02 20:51:06] 2026-02-02 19:49:13,720 | INFO     | . stage-in = 0 s
[2026-02-02 20:51:06] 2026-02-02 19:49:13,720 | INFO     | . payload execution = 11998 s
[2026-02-02 20:51:06] 2026-02-02 19:49:13,720 | INFO     | . stage-out = 1 s
[2026-02-02 20:51:06] 2026-02-02 19:49:13,720 | INFO     | . log creation = 0 s
[2026-02-02 20:51:06] 2026-02-02 19:49:13,720 | INFO     | ..............................
[2026-02-02 20:51:06] 2026-02-02 19:49:13,834 | INFO     | 
[2026-02-02 20:51:06] 2026-02-02 19:49:13,834 | INFO     | job summary report
[2026-02-02 20:51:06] 2026-02-02 19:49:13,835 | INFO     | --------------------------------------------------
[2026-02-02 20:51:06] 2026-02-02 19:49:13,835 | INFO     | PanDA job id: 6992353609
[2026-02-02 20:51:06] 2026-02-02 19:49:13,835 | INFO     | task id: 48310749
[2026-02-02 20:51:06] 2026-02-02 19:49:13,835 | INFO     | errors: (none)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,835 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 20:51:06] 2026-02-02 19:49:13,835 | INFO     | pilot state: finished 
[2026-02-02 20:51:06] 2026-02-02 19:49:13,835 | INFO     | transexitcode: 0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,835 | INFO     | exeerrorcode: 0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,836 | INFO     | exeerrordiag: 
[2026-02-02 20:51:06] 2026-02-02 19:49:13,836 | INFO     | exitcode: 0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,836 | INFO     | exitmsg: OK
[2026-02-02 20:51:06] 2026-02-02 19:49:13,836 | INFO     | cpuconsumptiontime: 46172 s
[2026-02-02 20:51:06] 2026-02-02 19:49:13,836 | INFO     | nevents: 400
[2026-02-02 20:51:06] 2026-02-02 19:49:13,836 | INFO     | neventsw: 0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,836 | INFO     | pid: 3713580
[2026-02-02 20:51:06] 2026-02-02 19:49:13,836 | INFO     | pgrp: 3713580
[2026-02-02 20:51:06] 2026-02-02 19:49:13,837 | INFO     | corecount: 4
[2026-02-02 20:51:06] 2026-02-02 19:49:13,837 | INFO     | event service: False
[2026-02-02 20:51:06] 2026-02-02 19:49:13,837 | INFO     | sizes: {0: 2278174, 1: 2278234, 11: 2278262, 12008: 2307788, 12009: 2307787, 12010: 2316863, 12014: 2317075, 12016: 2317269}
[2026-02-02 20:51:06] 2026-02-02 19:49:13,837 | INFO     | --------------------------------------------------
[2026-02-02 20:51:06] 2026-02-02 19:49:13,837 | INFO     | 
[2026-02-02 20:51:06] 2026-02-02 19:49:13,837 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2026-02-02 20:51:06] 2026-02-02 19:49:13,856 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,856 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,857 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,857 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,858 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,858 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,859 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,859 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,859 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 20:51:06] 2026-02-02 19:49:13,860 | INFO     | job 6992353609 has completed (purged errors)
[2026-02-02 20:51:06] 2026-02-02 19:49:13,860 | INFO     | overall cleanup function is called
[2026-02-02 20:51:06] 2026-02-02 19:49:14,867 | INFO     | --- collectZombieJob: --- 10, [3713580]
[2026-02-02 20:51:06] 2026-02-02 19:49:14,868 | INFO     | zombie collector waiting for pid 3713580
[2026-02-02 20:51:06] 2026-02-02 19:49:14,868 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 20:51:06] 2026-02-02 19:49:14,868 | INFO     | collected zombie processes
[2026-02-02 20:51:06] 2026-02-02 19:49:14,868 | INFO     | will attempt to kill all subprocesses of pid=3713580
[2026-02-02 20:51:06] 2026-02-02 19:49:15,194 | INFO     | process IDs to be killed: [3713580] (in reverse order)
[2026-02-02 20:51:06] 2026-02-02 19:49:15,283 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 20:51:06] 2026-02-02 19:49:15,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 20:51:06] 2026-02-02 19:49:15,293 | INFO     | did not find any defunct processes belonging to 3713580
[2026-02-02 20:51:06] 2026-02-02 19:49:15,303 | INFO     | did not find any defunct processes belonging to 3713580
[2026-02-02 20:51:06] 2026-02-02 19:49:15,303 | INFO     | ready for new job
[2026-02-02 20:51:06] 2026-02-02 19:49:15,304 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 20:51:06] 2026-02-02 19:49:15,306 | INFO     | **************************************
[2026-02-02 20:51:06] 2026-02-02 19:49:15,306 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 20:51:06] 2026-02-02 19:49:15,306 | INFO     | **************************************
[2026-02-02 20:51:06] 2026-02-02 19:49:15,307 | INFO     | 
[2026-02-02 20:51:06] 2026-02-02 19:49:15,309 | INFO     | architecture information:
[2026-02-02 20:51:06] 2026-02-02 19:49:15,309 | INFO     | executing command: cat /etc/os-release
[2026-02-02 20:51:06] 2026-02-02 19:49:15,325 | INFO     | cat /etc/os-release:
[2026-02-02 20:51:06] NAME="CentOS Linux"
[2026-02-02 20:51:06] VERSION="7 (Core)"
[2026-02-02 20:51:06] ID="centos"
[2026-02-02 20:51:06] ID_LIKE="rhel fedora"
[2026-02-02 20:51:06] VERSION_ID="7"
[2026-02-02 20:51:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 20:51:06] ANSI_COLOR="0;31"
[2026-02-02 20:51:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 20:51:06] HOME_URL="https://www.centos.org/"
[2026-02-02 20:51:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 20:51:06] 
[2026-02-02 20:51:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 20:51:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 20:51:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 20:51:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 20:51:06] 
[2026-02-02 20:51:06] 2026-02-02 19:49:15,325 | INFO     | **************************************
[2026-02-02 20:51:06] 2026-02-02 19:49:15,828 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2026-02-02 20:51:06] 2026-02-02 19:49:15,844 | INFO     | sufficient remaining disk space (1674096672768 B)
[2026-02-02 20:51:06] 2026-02-02 19:49:15,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 20:51:06] 2026-02-02 19:49:15,845 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 20:51:06] 2026-02-02 19:49:15,845 | INFO     | update_server=False
[2026-02-02 20:51:06] 2026-02-02 19:49:15,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 20:51:06] 2026-02-02 19:49:15,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 20:51:06] 2026-02-02 19:49:15,846 | INFO     | aborting loop
[2026-02-02 20:51:06] 2026-02-02 19:49:16,230 | INFO     | all job control threads have been joined
[2026-02-02 20:51:06] 2026-02-02 19:49:16,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 20:51:06] 2026-02-02 19:49:16,678 | INFO     | all data control threads have been joined
[2026-02-02 20:51:06] 2026-02-02 19:49:16,851 | INFO     | [job] retrieve thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:16,851 | INFO     | [job] job monitor thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:16,953 | INFO     | [payload] failed_post thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:17,118 | INFO     | [job] validate thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:17,235 | INFO     | [job] control thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:17,272 | INFO     | all payload control threads have been joined
[2026-02-02 20:51:06] 2026-02-02 19:49:17,276 | INFO     | [payload] validate_post thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:17,680 | INFO     | [data] control thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:17,682 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:17,687 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:17,863 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 20:51:06] 2026-02-02 19:49:17,911 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:18,167 | INFO     | [data] copytool_in thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:18,277 | INFO     | [payload] control thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:18,416 | INFO     | [data] copytool_out thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:18,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 20:51:06] 2026-02-02 19:49:19,851 | INFO     | [job] queue monitor thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:21,869 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:25,929 | INFO     | job.realtimelogging is not enabled
[2026-02-02 20:51:06] 2026-02-02 19:49:26,933 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 20:51:06] 2026-02-02 19:49:47,002 | INFO     | PID=3708882 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 20:51:06] 2026-02-02 19:49:47,003 | INFO     | .. there are 3 such processes running
[2026-02-02 20:51:06] 2026-02-02 19:49:47,003 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 20:51:06] 2026-02-02 19:49:47,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 20:51:06] 2026-02-02 19:49:47,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 20:51:06] 2026-02-02 19:50:05,988 | INFO     | [monitor] cgroup control has ended
[2026-02-02 20:51:06] 2026-02-02 19:50:07,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23236003710784)>', '<ExcThread(monitor, started 23235695453952)>']
[2026-02-02 20:51:06] 2026-02-02 19:50:08,094 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 20:51:06] 2026-02-02 19:50:08,095 | INFO     | [monitor] control thread has ended
[2026-02-02 20:51:06] 2026-02-02 19:50:12,963 | INFO     | all workflow threads have been joined
[2026-02-02 20:51:06] 2026-02-02 19:50:12,963 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 20:51:06] 2026-02-02 19:50:12,964 | INFO     | traces error code: 0
[2026-02-02 20:51:06] 2026-02-02 19:50:12,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 20:51:06] 2026-02-02 19:50:13,107 [wrapper] ==== pilot stdout END ====
[2026-02-02 20:51:06] 2026-02-02 19:50:13,110 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 20:51:06] 2026-02-02 19:50:13,113 [wrapper] pilotpid: 3708882
[2026-02-02 20:51:06] 2026-02-02 19:50:13,115 [wrapper] Pilot exit status: 0
[2026-02-02 20:51:06] 2026-02-02 19:50:13,126 [wrapper] pandaids: 6992353609
[2026-02-02 20:51:06] 2026-02-02 19:50:13,195 [wrapper] cleanup supervisor_pilot 3804950 3708883
[2026-02-02 20:51:06] 2026-02-02 19:50:13,198 [wrapper] Test setup, not cleaning
[2026-02-02 20:51:06] 2026-02-02 19:50:13,201 [wrapper] apfmon messages muted
[2026-02-02 20:51:06] 2026-02-02 19:50:13,203 [wrapper] ==== wrapper stdout END ====
[2026-02-02 20:51:06] 2026-02-02 19:50:13,205 [wrapper] ==== wrapper stderr END ====
[2026-02-02 20:51:06]  *** Error codes and diagnostics ***
[2026-02-02 20:51:06]     "exeErrorCode": 0,
[2026-02-02 20:51:06]     "exeErrorDiag": "",
[2026-02-02 20:51:06]     "pilotErrorCode": 0,
[2026-02-02 20:51:06]     "pilotErrorDiag": "",
[2026-02-02 20:51:06]  *** Listing of results directory ***
[2026-02-02 20:51:06] total 669588
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc    584422 Feb  1 13:55 pilot3.tar.gz
[2026-02-02 20:51:06] -rwx------ 1 boinc boinc     36322 Feb  1 13:57 runpilot2-wrapper.sh
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc      5111 Feb  1 13:59 queuedata.json
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc       100 Feb  2 17:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 20:51:06] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 17:28 run_atlas
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc       105 Feb  2 17:28 job.xml
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc      6423 Feb  2 17:28 init_data.xml
[2026-02-02 20:51:06] -rw-r--r-- 2 boinc boinc 496037638 Feb  2 17:28 EVNT.48310747._000062.pool.root.1
[2026-02-02 20:51:06] -rw-r--r-- 2 boinc boinc     15845 Feb  2 17:28 start_atlas.sh
[2026-02-02 20:51:06] drwxrwx--x 2 boinc boinc      4096 Feb  2 17:28 shared
[2026-02-02 20:51:06] -rw-r--r-- 2 boinc boinc    597761 Feb  2 17:28 input.tar.gz
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc         0 Feb  2 17:28 boinc_lockfile
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc      2523 Feb  2 17:28 pandaJob.out
[2026-02-02 20:51:06] -rw------- 1 boinc boinc   1009772 Feb  2 17:28 agis_schedconf.cvmfs.json
[2026-02-02 20:51:06] -rw------- 1 boinc boinc       447 Feb  2 17:28 workernode_map.json
[2026-02-02 20:51:06] drwx------ 5 boinc boinc      4096 Feb  2 17:28 pilot3
[2026-02-02 20:51:06] -rw------- 1 boinc boinc 181458836 Feb  2 20:48 HITS.48310749._003094.pool.root.1
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc       529 Feb  2 20:48 boinc_task_state.xml
[2026-02-02 20:51:06] -rw------- 1 boinc boinc      1038 Feb  2 20:49 memory_monitor_summary.json
[2026-02-02 20:51:06] -rw------- 1 boinc boinc   1511668 Feb  2 20:49 agis_ddmendpoints.agis.ALL.json
[2026-02-02 20:51:06] -rw------- 1 boinc boinc    408824 Feb  2 20:49 log.48310749._003094.job.log.tgz.1
[2026-02-02 20:51:06] -rw------- 1 boinc boinc        95 Feb  2 20:49 pilot_heartbeat.json
[2026-02-02 20:51:06] -rw------- 1 boinc boinc      6412 Feb  2 20:49 heartbeat.json
[2026-02-02 20:51:06] -rw------- 1 boinc boinc      4902 Feb  2 20:50 pilotlog.txt
[2026-02-02 20:51:06] -rw------- 1 boinc boinc   1703447 Feb  2 20:50 log.48310749._003094.job.log.1
[2026-02-02 20:51:06] -rw------- 1 boinc boinc       357 Feb  2 20:50 output.list
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc       620 Feb  2 20:50 runtime_log
[2026-02-02 20:51:06] -rw------- 1 boinc boinc   2129920 Feb  2 20:50 result.tar.gz
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc      9205 Feb  2 20:50 runtime_log.err
[2026-02-02 20:51:06] -rw------- 1 boinc boinc       666 Feb  2 20:50 nWbLDmpBm68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmyLQKDmcbafHo.diag
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc        27 Feb  2 20:51 wrapper_checkpoint.txt
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc      8192 Feb  2 20:51 boinc_mmap_file
[2026-02-02 20:51:06] -rw-r--r-- 1 boinc boinc     21113 Feb  2 20:51 stderr.txt
[2026-02-02 20:51:06] HITS file was successfully produced:
[2026-02-02 20:51:06] -rw------- 1 boinc boinc 181458836 Feb  2 20:48 shared/HITS.pool.root.1
[2026-02-02 20:51:06]  *** Contents of shared directory: ***
[2026-02-02 20:51:06] total 664308
[2026-02-02 20:51:06] -rw-r--r-- 2 boinc boinc 496037638 Feb  2 17:28 ATLAS.root_0
[2026-02-02 20:51:06] -rw-r--r-- 2 boinc boinc     15845 Feb  2 17:28 start_atlas.sh
[2026-02-02 20:51:06] -rw-r--r-- 2 boinc boinc    597761 Feb  2 17:28 input.tar.gz
[2026-02-02 20:51:06] -rw------- 1 boinc boinc 181458836 Feb  2 20:48 HITS.pool.root.1
[2026-02-02 20:51:06] -rw------- 1 boinc boinc   2129920 Feb  2 20:50 result.tar.gz
20:51:08 (3704900): run_atlas exited; CPU time 46703.191220
20:51:08 (3704900): called boinc_finish(0)

</stderr_txt>
]]>

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