Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:59:13 (4674): wrapper (7.7.26015): starting
20:59:13 (4674): wrapper: running run_atlas (--nthreads 8)
[2026-02-01 20:59:13] Arguments: --nthreads 8
[2026-02-01 20:59:13] Threads: 8
[2026-02-01 20:59:13] Checking for CVMFS
[2026-02-01 20:59:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 20:59:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 20:59:13] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 20:59:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 20:59:13] 2.11.0.0 4357 85628 67652 155761 2 188 2403151 4096001 4541 130560 1 3779197 99.228 5626514 458 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-01 20:59:13] CVMFS is ok
[2026-02-01 20:59:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 20:59:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 20:59:13] Further information can be found at the LHC@home message board.
[2026-02-01 20:59:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 20:59:13] Checking for apptainer binary...
[2026-02-01 20:59:13] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-01 20:59:13] apptainer is not installed, using version from CVMFS
[2026-02-01 20:59:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 20:59:13] WARNING: Environment variable TMPDIR already has value [/tmp/job_11072049/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node164
[2026-02-01 20:59:13] apptainer works
[2026-02-01 20:59:13] Set ATHENA_PROC_NUMBER=8
[2026-02-01 20:59:13] Set ATHENA_CORE_NUMBER=8
[2026-02-01 20:59:13] Starting ATLAS job with PandaID=6991475609
[2026-02-01 20:59:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11072049/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 21:45:30]  *** The last 200 lines of the pilot log: ***
[2026-02-01 21:45:30]  mtime=0
[2026-02-01 21:45:30]  protocol_id=None
[2026-02-01 21:45:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-01 21:45:30]  replicas=None
[2026-02-01 21:45:30]  scope=mc23_13p6TeV
[2026-02-01 21:45:30]  status=None
[2026-02-01 21:45:30]  status_code=0
[2026-02-01 21:45:30]  storage_token=
[2026-02-01 21:45:30]  surl=/tmp/job_11072049/atlas/pilot/slots/0/PanDA_Pilot-6991475609/log.48310749._001858.job.log.tgz.1
[2026-02-01 21:45:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/2d/log.48310749._001858.job.log.tgz.1
[2026-02-01 21:45:30]  workdir=None
[2026-02-01 21:45:30] ]
[2026-02-01 21:45:30] 2026-02-01 20:44:52,917 | INFO     | transferring file log.48310749._001858.job.log.tgz.1 from /tmp/job_11072049/atlas/pilot/slots/0/PanDA_Pilot-6991475609/log.48310749._001858.job.log.tgz.1 to /tmp/j
[2026-02-01 21:45:30] 2026-02-01 20:44:52,918 | INFO     | executing command: /usr/bin/env mv /tmp/job_11072049/atlas/pilot/slots/0/PanDA_Pilot-6991475609/log.48310749._001858.job.log.tgz.1 /tmp/job_11072049/atlas/pilot/sl
[2026-02-01 21:45:30] 2026-02-01 20:44:52,926 | INFO     | adding to output.list: log.48310749._001858.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/2d/log.48310749._001858.job.log.tg
[2026-02-01 21:45:30] 2026-02-01 20:44:52,926 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-01 21:45:30] 2026-02-01 20:44:52,926 | INFO     | summary of transferred files:
[2026-02-01 21:45:30] 2026-02-01 20:44:52,926 | INFO     |  -- lfn=log.48310749._001858.job.log.tgz.1, status_code=0, status=transferred
[2026-02-01 21:45:30] 2026-02-01 20:44:52,926 | INFO     | stage-out finished correctly
[2026-02-01 21:45:30] 2026-02-01 20:44:53,563 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-01 21:45:30] 2026-02-01 20:44:54,418 | INFO     | time since job start (2734s) is within the limit (349056.0s)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,316 | INFO     | job 6991475609 has state=finished
[2026-02-01 21:45:30] 2026-02-01 20:44:56,317 | INFO     | preparing for final server update for job 6991475609 in state='finished'
[2026-02-01 21:45:30] 2026-02-01 20:44:56,423 | INFO     | time since job start (2736s) is within the limit (349056.0s)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,825 | WARNING  | process 21612 can no longer be monitored (due to stat problems) - aborting
[2026-02-01 21:45:30] 2026-02-01 20:44:56,826 | INFO     | using path: /tmp/job_11072049/atlas/pilot/slots/0/PanDA_Pilot-6991475609/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,884 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,884 | INFO     | reading metadata from: /tmp/job_11072049/atlas/pilot/slots/0/PanDA_Pilot-6991475609/jobReport.json
[2026-02-01 21:45:30] 2026-02-01 20:44:56,886 | INFO     | added worker_node to metadata from /tmp/job_11072049/atlas/pilot/slots/0/workernode_map.json
[2026-02-01 21:45:30] 2026-02-01 20:44:56,886 | INFO     | this job has now completed (state=finished)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,886 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,886 | INFO     | log transfer has been attempted: DONE
[2026-02-01 21:45:30] 2026-02-01 20:44:56,886 | INFO     | job 6991475609 has finished - writing final server update
[2026-02-01 21:45:30] 2026-02-01 20:44:56,886 | INFO     | total number of processed events: 400 (read)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,905 | INFO     | using path: /tmp/job_11072049/atlas/pilot/slots/0/PanDA_Pilot-6991475609/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,905 | INFO     | extracted standard info from prmon json
[2026-02-01 21:45:30] 2026-02-01 20:44:56,905 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 21:45:30] 2026-02-01 20:44:56,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 21:45:30] 2026-02-01 20:44:56,906 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 21:45:30] 2026-02-01 20:44:56,906 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 21:45:30] 2026-02-01 20:44:56,906 | INFO     | fitting pss+swap vs Time
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | sum of square deviations: 17003109.5
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | sum of deviations: -155512759.50000003
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | mean x: 1769977409.5
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | mean y: 2532645.9210526315
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | intersect: 16190987540.245329
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | chi2: 0.0012839104075765067
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | current memory leak: -9.15 B/s (using 38 data points, chi2=0.00)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | could have reported an average CPU frequency of 2949 MHz (5 samples)
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | ..............................
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | . Timing measurements:
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | . get job = 0 s
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | . initial setup = 2 s
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | . payload setup = 2 s
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | . stage-in = 0 s
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | . payload execution = 2714 s
[2026-02-01 21:45:30] 2026-02-01 20:44:56,907 | INFO     | . stage-out = 0 s
[2026-02-01 21:45:30] 2026-02-01 20:44:56,908 | INFO     | . log creation = 0 s
[2026-02-01 21:45:30] 2026-02-01 20:44:56,908 | INFO     | ..............................
[2026-02-01 21:45:30] 2026-02-01 20:44:56,974 | INFO     | number of running child processes to parent process 21612: 1
[2026-02-01 21:45:30] 2026-02-01 20:44:56,974 | INFO     | maximum number of monitored processes: 6
[2026-02-01 21:45:30] 2026-02-01 20:44:56,975 | INFO     | aborting job monitoring since job object (job id=6991475609) has expired
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | 
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | job summary report
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | --------------------------------------------------
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | PanDA job id: 6991475609
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | task id: 48310749
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | errors: (none)
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | pilot state: finished 
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | transexitcode: 0
[2026-02-01 21:45:30] 2026-02-01 20:44:57,351 | INFO     | exeerrorcode: 0
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | exeerrordiag: 
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | exitcode: 0
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | exitmsg: OK
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | cpuconsumptiontime: 18804 s
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | nevents: 400
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | neventsw: 0
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | pid: 21612
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | pgrp: 21612
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | corecount: 8
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | event service: False
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | sizes: {0: 2278083, 1: 2278345, 11: 2278373, 2720: 2303809, 2722: 2312893, 2726: 2313063}
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | --------------------------------------------------
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | 
[2026-02-01 21:45:30] 2026-02-01 20:44:57,352 | INFO     | executing command: ls -lF /tmp/job_11072049/atlas/pilot/slots/0
[2026-02-01 21:45:30] 2026-02-01 20:44:57,362 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | job 6991475609 has completed (purged errors)
[2026-02-01 21:45:30] 2026-02-01 20:44:57,363 | INFO     | overall cleanup function is called
[2026-02-01 21:45:30] 2026-02-01 20:44:58,369 | INFO     | --- collectZombieJob: --- 10, [21612]
[2026-02-01 21:45:30] 2026-02-01 20:44:58,369 | INFO     | zombie collector waiting for pid 21612
[2026-02-01 21:45:30] 2026-02-01 20:44:58,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 21:45:30] 2026-02-01 20:44:58,370 | INFO     | collected zombie processes
[2026-02-01 21:45:30] 2026-02-01 20:44:58,370 | INFO     | will attempt to kill all subprocesses of pid=21612
[2026-02-01 21:45:30] 2026-02-01 20:44:58,468 | INFO     | process IDs to be killed: [21612] (in reverse order)
[2026-02-01 21:45:30] 2026-02-01 20:44:58,502 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 21:45:30] 2026-02-01 20:44:58,502 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 21:45:30] 2026-02-01 20:44:58,506 | INFO     | did not find any defunct processes belonging to 21612
[2026-02-01 21:45:30] 2026-02-01 20:44:58,508 | INFO     | did not find any defunct processes belonging to 21612
[2026-02-01 21:45:30] 2026-02-01 20:44:58,509 | INFO     | ready for new job
[2026-02-01 21:45:30] 2026-02-01 20:44:58,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 21:45:30] 2026-02-01 20:44:58,509 | INFO     | **************************************
[2026-02-01 21:45:30] 2026-02-01 20:44:58,509 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 21:45:30] 2026-02-01 20:44:58,509 | INFO     | **************************************
[2026-02-01 21:45:30] 2026-02-01 20:44:58,509 | INFO     | 
[2026-02-01 21:45:30] 2026-02-01 20:44:58,523 | INFO     | architecture information:
[2026-02-01 21:45:30] 2026-02-01 20:44:58,523 | INFO     | executing command: cat /etc/os-release
[2026-02-01 21:45:30] 2026-02-01 20:44:58,530 | INFO     | cat /etc/os-release:
[2026-02-01 21:45:30] NAME="CentOS Linux"
[2026-02-01 21:45:30] VERSION="7 (Core)"
[2026-02-01 21:45:30] ID="centos"
[2026-02-01 21:45:30] ID_LIKE="rhel fedora"
[2026-02-01 21:45:30] VERSION_ID="7"
[2026-02-01 21:45:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 21:45:30] ANSI_COLOR="0;31"
[2026-02-01 21:45:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 21:45:30] HOME_URL="https://www.centos.org/"
[2026-02-01 21:45:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 21:45:30] 
[2026-02-01 21:45:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 21:45:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 21:45:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 21:45:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 21:45:30] 
[2026-02-01 21:45:30] 2026-02-01 20:44:58,530 | INFO     | **************************************
[2026-02-01 21:45:30] 2026-02-01 20:44:59,033 | INFO     | executing command: df -mP /tmp/job_11072049/atlas/pilot/slots/0
[2026-02-01 21:45:30] 2026-02-01 20:44:59,040 | INFO     | sufficient remaining disk space (223953813504 B)
[2026-02-01 21:45:30] 2026-02-01 20:44:59,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 21:45:30] 2026-02-01 20:44:59,041 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 21:45:30] 2026-02-01 20:44:59,041 | INFO     | update_server=False
[2026-02-01 21:45:30] 2026-02-01 20:44:59,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 21:45:30] 2026-02-01 20:44:59,041 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 21:45:30] 2026-02-01 20:44:59,475 | INFO     | all data control threads have been joined
[2026-02-01 21:45:30] 2026-02-01 20:44:59,477 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-01 21:45:30] 2026-02-01 20:44:59,477 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-01 21:45:30] 2026-02-01 20:44:59,477 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 21:45:30] 2026-02-01 20:44:59,477 | INFO     | will abort loop
[2026-02-01 21:45:30] 2026-02-01 20:44:59,618 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 21:45:30] 2026-02-01 20:44:59,900 | INFO     | all payload control threads have been joined
[2026-02-01 21:45:30] 2026-02-01 20:45:00,046 | INFO     | [job] retrieve thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:00,062 | INFO     | [payload] validate_post thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:00,134 | INFO     | [data] copytool_in thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:00,481 | INFO     | [data] control thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:00,483 | INFO     | [job] job monitor thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:00,483 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:00,483 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:00,585 | INFO     | all job control threads have been joined
[2026-02-01 21:45:30] 2026-02-01 20:45:00,774 | INFO     | [payload] failed_post thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:00,906 | INFO     | [payload] control thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:01,000 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:01,046 | INFO     | [data] copytool_out thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:01,292 | INFO     | [job] validate thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:01,590 | INFO     | [job] control thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:01,967 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 21:45:30] 2026-02-01 20:45:02,972 | INFO     | [job] queue monitor thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:03,624 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:09,266 | INFO     | job.realtimelogging is not enabled
[2026-02-01 21:45:30] 2026-02-01 20:45:10,271 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 21:45:30] 2026-02-01 20:45:24,354 | INFO     | [monitor] cgroup control has ended
[2026-02-01 21:45:30] 2026-02-01 20:45:25,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-01 21:45:30] 2026-02-01 20:45:29,608 | INFO     | PID=12505 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-01 21:45:30] 2026-02-01 20:45:29,608 | INFO     | .. there are 2 such processes running
[2026-02-01 21:45:30] 2026-02-01 20:45:29,608 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 21:45:30] 2026-02-01 20:45:29,608 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 21:45:30] 2026-02-01 20:45:29,608 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 21:45:30] 2026-02-01 20:45:29,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 21:45:30] 2026-02-01 20:45:29,608 | INFO     | [monitor] control thread has ended
[2026-02-01 21:45:30] 2026-02-01 20:45:30,328 | INFO     | all workflow threads have been joined
[2026-02-01 21:45:30] 2026-02-01 20:45:30,328 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 21:45:30] 2026-02-01 20:45:30,328 | INFO     | traces error code: 0
[2026-02-01 21:45:30] 2026-02-01 20:45:30,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 21:45:30] 2026-02-01 20:45:30,395 [wrapper] ==== pilot stdout END ====
[2026-02-01 21:45:30] 2026-02-01 20:45:30,396 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 21:45:30] 2026-02-01 20:45:30,398 [wrapper] pilotpid: 12505
[2026-02-01 21:45:30] 2026-02-01 20:45:30,399 [wrapper] Pilot exit status: 0
[2026-02-01 21:45:30] 2026-02-01 20:45:30,403 [wrapper] pandaids: 6991475609
[2026-02-01 21:45:30] 2026-02-01 20:45:30,425 [wrapper] cleanup supervisor_pilot 10550 12506
[2026-02-01 21:45:30] 2026-02-01 20:45:30,427 [wrapper] Test setup, not cleaning
[2026-02-01 21:45:30] 2026-02-01 20:45:30,428 [wrapper] apfmon messages muted
[2026-02-01 21:45:30] 2026-02-01 20:45:30,429 [wrapper] ==== wrapper stdout END ====
[2026-02-01 21:45:30] 2026-02-01 20:45:30,430 [wrapper] ==== wrapper stderr END ====
[2026-02-01 21:45:30]  *** Error codes and diagnostics ***
[2026-02-01 21:45:30]     "exeErrorCode": 0,
[2026-02-01 21:45:30]     "exeErrorDiag": "",
[2026-02-01 21:45:30]     "pilotErrorCode": 0,
[2026-02-01 21:45:30]     "pilotErrorDiag": "",
[2026-02-01 21:45:30]  *** Listing of results directory ***
[2026-02-01 21:45:30] total 658516
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user    584422 Feb  1 12:00 pilot3.tar.gz
[2026-02-01 21:45:30] -rwx------ 1 mf493845 unix-user     36322 Feb  1 12:00 runpilot2-wrapper.sh
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user      5111 Feb  1 12:01 queuedata.json
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user       100 Feb  1 18:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 21:45:30] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  1 18:54 run_atlas
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user       105 Feb  1 18:54 job.xml
[2026-02-01 21:45:30] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  1 20:59 start_atlas.sh
[2026-02-01 21:45:30] drwxrwx--x 2 mf493845 unix-user       100 Feb  1 20:59 shared
[2026-02-01 21:45:30] -rw-r--r-- 2 mf493845 unix-user    597759 Feb  1 20:59 input.tar.gz
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user      6391 Feb  1 20:59 init_data.xml
[2026-02-01 21:45:30] -rw-r--r-- 2 mf493845 unix-user 490344257 Feb  1 20:59 EVNT.48310747._000038.pool.root.1
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user         0 Feb  1 20:59 boinc_setup_complete
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user      8192 Feb  1 20:59 boinc_mmap_file
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user         0 Feb  1 20:59 boinc_lockfile
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user      2521 Feb  1 20:59 pandaJob.out
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user   1009765 Feb  1 20:59 agis_schedconf.cvmfs.json
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user   1511668 Feb  1 20:59 agis_ddmendpoints.agis.ALL.json
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user       416 Feb  1 20:59 workernode_map.json
[2026-02-01 21:45:30] drwx------ 5 mf493845 unix-user       440 Feb  1 20:59 pilot3
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user 178605212 Feb  1 21:44 HITS.48310749._001858.pool.root.1
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user      1021 Feb  1 21:44 memory_monitor_summary.json
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user    290178 Feb  1 21:44 log.48310749._001858.job.log.tgz.1
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user        95 Feb  1 21:44 pilot_heartbeat.json
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user      6305 Feb  1 21:44 heartbeat.json
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user      5089 Feb  1 21:45 pilotlog.txt
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user    440227 Feb  1 21:45 log.48310749._001858.job.log.1
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user       357 Feb  1 21:45 output.list
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user       620 Feb  1 21:45 runtime_log
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user    747520 Feb  1 21:45 result.tar.gz
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user      9219 Feb  1 21:45 runtime_log.err
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user       641 Feb  1 21:45 e3FMDmTNk68n9Rq4apOajLDm4fhM0noT9bVooX4SDm8gPKDmlh0b6n.diag
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user     22213 Feb  1 21:45 stderr.txt
[2026-02-01 21:45:30] HITS file was successfully produced:
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user 178605212 Feb  1 21:44 shared/HITS.pool.root.1
[2026-02-01 21:45:30]  *** Contents of shared directory: ***
[2026-02-01 21:45:30] total 654604
[2026-02-01 21:45:30] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  1 20:59 start_atlas.sh
[2026-02-01 21:45:30] -rw-r--r-- 2 mf493845 unix-user    597759 Feb  1 20:59 input.tar.gz
[2026-02-01 21:45:30] -rw-r--r-- 2 mf493845 unix-user 490344257 Feb  1 20:59 ATLAS.root_0
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user 178605212 Feb  1 21:44 HITS.pool.root.1
[2026-02-01 21:45:30] -rw------- 1 mf493845 unix-user    747520 Feb  1 21:45 result.tar.gz
21:45:31 (4674): run_atlas exited; CPU time 18838.573103
21:45:31 (4674): called boinc_finish(0)

</stderr_txt>
]]>

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