Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:36:34 (984443): wrapper (7.7.26015): starting
04:36:34 (984443): wrapper: running run_atlas (--nthreads 3)
[2026-02-02 04:36:34] Arguments: --nthreads 3
[2026-02-02 04:36:34] Threads: 3
[2026-02-02 04:36:34] Checking for CVMFS
[2026-02-02 04:36:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 04:36:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 04:36:35] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 04:36:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 04:36:35] 2.9.2.0 4027610 6678 87836 155772 2 50 25172072 36864000 0 130560 0 3002081 99.987 209674 13607 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 04:36:35] CVMFS is ok
[2026-02-02 04:36:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 04:36:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 04:36:35] Further information can be found at the LHC@home message board.
[2026-02-02 04:36:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 04:36:35] Checking for apptainer binary...
[2026-02-02 04:36:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 04:36:35] Running /usr/bin/apptainer --version
[2026-02-02 04:36:35] apptainer version 1.4.1-1.1
[2026-02-02 04:36:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 04:36:35] magicA246a
[2026-02-02 04:36:35] apptainer works
[2026-02-02 04:36:35] Set ATHENA_PROC_NUMBER=3
[2026-02-02 04:36:35] Set ATHENA_CORE_NUMBER=3
[2026-02-02 04:36:35] Starting ATLAS job with PandaID=6991384733
[2026-02-02 04:36:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 06:01:14]  *** The last 200 lines of the pilot log: ***
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 06:01:14] 2026-02-02 05:00:43,298 | INFO     | job 6991384733 has completed (purged errors)
[2026-02-02 06:01:14] 2026-02-02 05:00:43,299 | INFO     | overall cleanup function is called
[2026-02-02 06:01:14] 2026-02-02 05:00:44,304 | INFO     | --- collectZombieJob: --- 10, [992914]
[2026-02-02 06:01:14] 2026-02-02 05:00:44,305 | INFO     | zombie collector waiting for pid 992914
[2026-02-02 06:01:14] 2026-02-02 05:00:44,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 06:01:14] 2026-02-02 05:00:44,305 | INFO     | collected zombie processes
[2026-02-02 06:01:14] 2026-02-02 05:00:44,305 | INFO     | will attempt to kill all subprocesses of pid=992914
[2026-02-02 06:01:14] 2026-02-02 05:00:44,362 | INFO     | process IDs to be killed: [992914] (in reverse order)
[2026-02-02 06:01:14] 2026-02-02 05:00:44,390 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 06:01:14] 2026-02-02 05:00:44,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 06:01:14] 2026-02-02 05:00:44,392 | INFO     | did not find any defunct processes belonging to 992914
[2026-02-02 06:01:14] 2026-02-02 05:00:44,394 | INFO     | did not find any defunct processes belonging to 992914
[2026-02-02 06:01:14] 2026-02-02 05:00:44,394 | INFO     | ready for new job
[2026-02-02 06:01:14] 2026-02-02 05:00:44,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 06:01:14] 2026-02-02 05:00:44,394 | INFO     | **************************************
[2026-02-02 06:01:14] 2026-02-02 05:00:44,394 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 06:01:14] 2026-02-02 05:00:44,394 | INFO     | **************************************
[2026-02-02 06:01:14] 2026-02-02 05:00:44,395 | INFO     | 
[2026-02-02 06:01:14] 2026-02-02 05:00:44,395 | INFO     | architecture information:
[2026-02-02 06:01:14] 2026-02-02 05:00:44,395 | INFO     | executing command: cat /etc/os-release
[2026-02-02 06:01:14] 2026-02-02 05:00:44,404 | INFO     | cat /etc/os-release:
[2026-02-02 06:01:14] NAME="CentOS Linux"
[2026-02-02 06:01:14] VERSION="7 (Core)"
[2026-02-02 06:01:14] ID="centos"
[2026-02-02 06:01:14] ID_LIKE="rhel fedora"
[2026-02-02 06:01:14] VERSION_ID="7"
[2026-02-02 06:01:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 06:01:14] ANSI_COLOR="0;31"
[2026-02-02 06:01:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 06:01:14] HOME_URL="https://www.centos.org/"
[2026-02-02 06:01:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 06:01:14] 
[2026-02-02 06:01:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 06:01:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 06:01:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 06:01:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 06:01:14] 
[2026-02-02 06:01:14] 2026-02-02 05:00:44,405 | INFO     | **************************************
[2026-02-02 06:01:14] 2026-02-02 05:00:44,907 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 06:01:14] 2026-02-02 05:00:44,917 | INFO     | sufficient remaining disk space (275929628672 B)
[2026-02-02 06:01:14] 2026-02-02 05:00:44,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 06:01:14] 2026-02-02 05:00:44,918 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 06:01:14] 2026-02-02 05:00:44,918 | INFO     | update_server=False
[2026-02-02 06:01:14] 2026-02-02 05:00:44,918 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 06:01:14] 2026-02-02 05:00:44,918 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 06:01:14] 2026-02-02 05:00:44,918 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 06:01:14] 2026-02-02 05:00:45,064 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-02 06:01:14] 2026-02-02 05:00:45,064 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-02 06:01:14] 2026-02-02 05:00:45,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 06:01:14] 2026-02-02 05:00:45,065 | INFO     | will abort loop
[2026-02-02 06:01:14] 2026-02-02 05:00:45,268 | INFO     | all data control threads have been joined
[2026-02-02 06:01:14] 2026-02-02 05:00:45,766 | INFO     | all payload control threads have been joined
[2026-02-02 06:01:14] 2026-02-02 05:00:45,922 | INFO     | [job] retrieve thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:45,923 | INFO     | [job] queue monitor thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:46,069 | INFO     | [job] job monitor thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:46,233 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 06:01:14] 2026-02-02 05:00:46,273 | INFO     | [data] control thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:46,467 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:46,552 | INFO     | [payload] failed_post thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:46,567 | INFO     | all job control threads have been joined
[2026-02-02 06:01:14] 2026-02-02 05:00:46,635 | INFO     | [job] validate thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:46,658 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:46,719 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:46,771 | INFO     | [payload] control thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:46,868 | INFO     | [data] copytool_in thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:47,129 | INFO     | [payload] validate_post thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:47,572 | INFO     | [job] control thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:48,238 | INFO     | [data] copytool_out thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:48,447 | INFO     | job.realtimelogging is not enabled
[2026-02-02 06:01:14] 2026-02-02 05:00:48,924 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:49,452 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 06:01:14] 2026-02-02 05:00:52,325 | INFO     | [monitor] cgroup control has ended
[2026-02-02 06:01:14] 2026-02-02 05:00:53,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140525248214848)>', '<ExcThread(monitor, started 140524966393600)>']
[2026-02-02 06:01:14] 2026-02-02 05:00:58,895 | INFO     | all workflow threads have been joined
[2026-02-02 06:01:14] 2026-02-02 05:00:58,895 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 06:01:14] 2026-02-02 05:00:58,895 | INFO     | traces error code: 0
[2026-02-02 06:01:14] 2026-02-02 05:00:58,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 06:01:14] 2026-02-02 05:01:14,549 | INFO     | PID=988493 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-02 06:01:14] 2026-02-02 05:01:14,550 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 06:01:14] 2026-02-02 05:01:14,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 06:01:14] 2026-02-02 05:01:14,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 06:01:14] 2026-02-02 05:01:14,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 06:01:14] 2026-02-02 05:01:14,550 | INFO     | [monitor] control thread has ended
[2026-02-02 06:01:14] 2026-02-02 05:01:14,600 [wrapper] ==== pilot stdout END ====
[2026-02-02 06:01:14] 2026-02-02 05:01:14,602 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 06:01:14] 2026-02-02 05:01:14,604 [wrapper] pilotpid: 988493
[2026-02-02 06:01:14] 2026-02-02 05:01:14,607 [wrapper] Pilot exit status: 0
[2026-02-02 06:01:14] 2026-02-02 05:01:14,614 [wrapper] pandaids: 6991384733
[2026-02-02 06:01:14] 2026-02-02 05:01:14,633 [wrapper] cleanup supervisor_pilot  999205 988494
[2026-02-02 06:01:14] 2026-02-02 05:01:14,636 [wrapper] Test setup, not cleaning
[2026-02-02 06:01:14] 2026-02-02 05:01:14,638 [wrapper] apfmon messages muted
[2026-02-02 06:01:14] 2026-02-02 05:01:14,640 [wrapper] ==== wrapper stdout END ====
[2026-02-02 06:01:14] 2026-02-02 05:01:14,642 [wrapper] ==== wrapper stderr END ====
[2026-02-02 06:01:14]  *** Error codes and diagnostics ***
[2026-02-02 06:01:14]     "exeErrorCode": 0,
[2026-02-02 06:01:14]     "exeErrorDiag": "",
[2026-02-02 06:01:14]     "pilotErrorCode": 0,
[2026-02-02 06:01:14]     "pilotErrorDiag": "",
[2026-02-02 06:01:14]  *** Listing of results directory ***
[2026-02-02 06:01:14] total 721920
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc    584422 Feb  1 12:00 pilot3.tar.gz
[2026-02-02 06:01:14] -rwx------ 1 boinc boinc     36322 Feb  1 12:01 runpilot2-wrapper.sh
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc      5111 Feb  1 12:04 queuedata.json
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc       100 Feb  2 04:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 06:01:14] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 04:36 run_atlas
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc       105 Feb  2 04:36 job.xml
[2026-02-02 06:01:14] -rw-r--r-- 2 boinc boinc 539574748 Feb  2 04:36 EVNT.48310836._000015.pool.root.1
[2026-02-02 06:01:14] -rw-r--r-- 2 boinc boinc    597772 Feb  2 04:36 input.tar.gz
[2026-02-02 06:01:14] -rw-r--r-- 2 boinc boinc     15845 Feb  2 04:36 start_atlas.sh
[2026-02-02 06:01:14] drwxrwx--x 2 boinc boinc      4096 Feb  2 04:36 shared
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc         0 Feb  2 04:36 boinc_setup_complete
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc      6447 Feb  2 04:36 init_data.xml
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc         0 Feb  2 04:36 boinc_lockfile
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc      2501 Feb  2 04:36 pandaJob.out
[2026-02-02 06:01:14] -rw------- 1 boinc boinc   1009823 Feb  2 04:36 agis_schedconf.cvmfs.json
[2026-02-02 06:01:14] -rw------- 1 boinc boinc   1511668 Feb  2 04:36 agis_ddmendpoints.agis.ALL.json
[2026-02-02 06:01:14] -rw------- 1 boinc boinc       427 Feb  2 04:36 workernode_map.json
[2026-02-02 06:01:14] drwx------ 5 boinc boinc      4096 Feb  2 04:36 pilot3
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc       530 Feb  2 06:00 boinc_task_state.xml
[2026-02-02 06:01:14] -rw------- 1 boinc boinc 193702688 Feb  2 06:00 HITS.48310840._002829.pool.root.1
[2026-02-02 06:01:14] -rw------- 1 boinc boinc      1035 Feb  2 06:00 memory_monitor_summary.json
[2026-02-02 06:01:14] -rw------- 1 boinc boinc    284453 Feb  2 06:00 log.48310840._002829.job.log.tgz.1
[2026-02-02 06:01:14] -rw------- 1 boinc boinc      6316 Feb  2 06:00 heartbeat.json
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc      8192 Feb  2 06:00 boinc_mmap_file
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc        27 Feb  2 06:00 wrapper_checkpoint.txt
[2026-02-02 06:01:14] -rw------- 1 boinc boinc       746 Feb  2 06:01 pilotlog.txt
[2026-02-02 06:01:14] -rw------- 1 boinc boinc        95 Feb  2 06:01 pilot_heartbeat.json
[2026-02-02 06:01:14] -rw------- 1 boinc boinc    735657 Feb  2 06:01 log.48310840._002829.job.log.1
[2026-02-02 06:01:14] -rw------- 1 boinc boinc       357 Feb  2 06:01 output.list
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc       620 Feb  2 06:01 runtime_log
[2026-02-02 06:01:14] -rw------- 1 boinc boinc   1034240 Feb  2 06:01 result.tar.gz
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc      8916 Feb  2 06:01 runtime_log.err
[2026-02-02 06:01:14] -rw------- 1 boinc boinc       661 Feb  2 06:01 WRWMDmsNk68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmb8PKDmQTwFMn.diag
[2026-02-02 06:01:14] -rw-r--r-- 1 boinc boinc     12767 Feb  2 06:01 stderr.txt
[2026-02-02 06:01:14] HITS file was successfully produced:
[2026-02-02 06:01:14] -rw------- 1 boinc boinc 193702688 Feb  2 06:00 shared/HITS.pool.root.1
[2026-02-02 06:01:14]  *** Contents of shared directory: ***
[2026-02-02 06:01:14] total 717716
[2026-02-02 06:01:14] -rw-r--r-- 2 boinc boinc 539574748 Feb  2 04:36 ATLAS.root_0
[2026-02-02 06:01:14] -rw-r--r-- 2 boinc boinc    597772 Feb  2 04:36 input.tar.gz
[2026-02-02 06:01:14] -rw-r--r-- 2 boinc boinc     15845 Feb  2 04:36 start_atlas.sh
[2026-02-02 06:01:14] -rw------- 1 boinc boinc 193702688 Feb  2 06:00 HITS.pool.root.1
[2026-02-02 06:01:14] -rw------- 1 boinc boinc   1034240 Feb  2 06:01 result.tar.gz
06:01:15 (984443): run_atlas exited; CPU time 14507.209266
06:01:15 (984443): called boinc_finish(0)

</stderr_txt>
]]>

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