Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
11:56:53 (3241214): wrapper (7.7.26015): starting
11:56:53 (3241214): wrapper: running run_atlas (--nthreads 12)
[2026-02-02 11:56:53] Arguments: --nthreads 12
[2026-02-02 11:56:53] Threads: 12
[2026-02-02 11:56:53] Checking for CVMFS
[2026-02-02 11:56:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 11:56:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 11:56:54] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 11:57:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 11:57:17] 2.12.7.0 3066881 7493 83548 155794 2 50 4004945 4194305 917 130560 0 8125448 99.939 520505 545 http://s1fnal-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-02-02 11:57:17] CVMFS is ok
[2026-02-02 11:57:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 11:57:17] Checking for apptainer binary...
[2026-02-02 11:57:17] apptainer is not installed, using version from CVMFS
[2026-02-02 11:57:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 11:57:17] Trebeth
[2026-02-02 11:57:17] apptainer works
[2026-02-02 11:57:17] Set ATHENA_PROC_NUMBER=12
[2026-02-02 11:57:17] Set ATHENA_CORE_NUMBER=12
[2026-02-02 11:57:17] Starting ATLAS job with PandaID=6995420015
[2026-02-02 11:57:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 13:06:46]  *** The last 200 lines of the pilot log: ***
[2026-02-02 13:06:46]  lfn=log.48317892._006469.job.log.tgz.1
[2026-02-02 13:06:46]  mtime=0
[2026-02-02 13:06:46]  protocol_id=None
[2026-02-02 13:06:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-02 13:06:46]  replicas=None
[2026-02-02 13:06:46]  scope=mc23_13p6TeV
[2026-02-02 13:06:46]  status=None
[2026-02-02 13:06:46]  status_code=0
[2026-02-02 13:06:46]  storage_token=
[2026-02-02 13:06:46]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6995420015/log.48317892._006469.job.log.tgz.1
[2026-02-02 13:06:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/48/log.48317892._006469.job.log.tgz.1
[2026-02-02 13:06:46]  workdir=None
[2026-02-02 13:06:46] ]
[2026-02-02 13:06:46] 2026-02-02 18:05:59,830 | INFO     | transferring file log.48317892._006469.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6995420015/log.48317892._006469.job.log.tgz.1 to /var/lib/boinc
[2026-02-02 13:06:46] 2026-02-02 18:05:59,831 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6995420015/log.48317892._006469.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.483178
[2026-02-02 13:06:46] 2026-02-02 18:05:59,844 | INFO     | adding to output.list: log.48317892._006469.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/48/log.48317892._006469.job.log.tg
[2026-02-02 13:06:46] 2026-02-02 18:05:59,845 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-02 13:06:46] 2026-02-02 18:05:59,845 | INFO     | summary of transferred files:
[2026-02-02 13:06:46] 2026-02-02 18:05:59,845 | INFO     |  -- lfn=log.48317892._006469.job.log.tgz.1, status_code=0, status=transferred
[2026-02-02 13:06:46] 2026-02-02 18:05:59,845 | INFO     | stage-out finished correctly
[2026-02-02 13:06:46] 2026-02-02 18:06:00,059 | INFO     | time since job start (4106s) is within the limit (349056.0s)
[2026-02-02 13:06:46] 2026-02-02 18:06:00,103 | WARNING  | process 3250546 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 13:06:46] 2026-02-02 18:06:00,104 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6995420015/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 13:06:46] 2026-02-02 18:06:00,237 | INFO     | number of running child processes to parent process 3250546: 1
[2026-02-02 13:06:46] 2026-02-02 18:06:00,237 | INFO     | maximum number of monitored processes: 6
[2026-02-02 13:06:46] 2026-02-02 18:06:02,063 | INFO     | time since job start (4108s) is within the limit (349056.0s)
[2026-02-02 13:06:46] 2026-02-02 18:06:02,106 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-02 13:06:46] 2026-02-02 18:06:02,740 | INFO     | monitor loop #310: job 0:6995420015 is in state 'finished'
[2026-02-02 13:06:46] 2026-02-02 18:06:02,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,068 | INFO     | time since job start (4110s) is within the limit (349056.0s)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,807 | INFO     | job 6995420015 has state=finished
[2026-02-02 13:06:46] 2026-02-02 18:06:04,808 | INFO     | preparing for final server update for job 6995420015 in state='finished'
[2026-02-02 13:06:46] 2026-02-02 18:06:04,808 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-6995420015/jobReport.json
[2026-02-02 13:06:46] 2026-02-02 18:06:04,809 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-02-02 13:06:46] 2026-02-02 18:06:04,809 | INFO     | this job has now completed (state=finished)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,809 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,810 | INFO     | log transfer has been attempted: DONE
[2026-02-02 13:06:46] 2026-02-02 18:06:04,810 | INFO     | job 6995420015 has finished - writing final server update
[2026-02-02 13:06:46] 2026-02-02 18:06:04,810 | INFO     | total number of processed events: 400 (read)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,837 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6995420015/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,838 | INFO     | extracted standard info from prmon json
[2026-02-02 13:06:46] 2026-02-02 18:06:04,838 | INFO     | extracted standard memory fields from prmon json
[2026-02-02 13:06:46] 2026-02-02 18:06:04,838 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-02 13:06:46] 2026-02-02 18:06:04,838 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-02 13:06:46] 2026-02-02 18:06:04,838 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-02 13:06:46] 2026-02-02 18:06:04,839 | INFO     | fitting pss+swap vs Time
[2026-02-02 13:06:46] 2026-02-02 18:06:04,839 | INFO     | sum of square deviations: 66959395.0
[2026-02-02 13:06:46] 2026-02-02 18:06:04,839 | INFO     | sum of deviations: -3874959211.5000005
[2026-02-02 13:06:46] 2026-02-02 18:06:04,839 | INFO     | mean x: 1770053577.5
[2026-02-02 13:06:46] 2026-02-02 18:06:04,839 | INFO     | mean y: 2794828.783333333
[2026-02-02 13:06:46] 2026-02-02 18:06:04,839 | INFO     | intersect: 102436298222.62605
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | chi2: 0.06645201060746751
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | current memory leak: -57.87 B/s (using 60 data points, chi2=0.07)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | could have reported an average CPU frequency of 2888 MHz (6 samples)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | ..............................
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | . Timing measurements:
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | . get job = 0 s
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | . initial setup = 6 s
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | . payload setup = 4 s
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | . stage-in = 0 s
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | . payload execution = 4086 s
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | . stage-out = 0 s
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | . log creation = 0 s
[2026-02-02 13:06:46] 2026-02-02 18:06:04,840 | INFO     | ..............................
[2026-02-02 13:06:46] 2026-02-02 18:06:04,889 | INFO     | 
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | job summary report
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | --------------------------------------------------
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | PanDA job id: 6995420015
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | task id: 48317892
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | errors: (none)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | pilot state: finished 
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | transexitcode: 0
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | exeerrorcode: 0
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | exeerrordiag: 
[2026-02-02 13:06:46] 2026-02-02 18:06:04,890 | INFO     | exitcode: 0
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | exitmsg: OK
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | cpuconsumptiontime: 43894 s
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | nevents: 400
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | neventsw: 0
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | pid: 3250546
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | pgrp: 3250546
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | corecount: 12
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | event service: False
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | sizes: {0: 2277795, 1: 2278256, 11: 2278256, 4094: 2304190, 4095: 2313202, 4097: 2313258, 4100: 2313580}
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | --------------------------------------------------
[2026-02-02 13:06:46] 2026-02-02 18:06:04,891 | INFO     | 
[2026-02-02 13:06:46] 2026-02-02 18:06:04,892 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,908 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,908 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,908 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,908 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,908 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,908 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,908 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 13:06:46] 2026-02-02 18:06:04,908 | INFO     | job 6995420015 has completed (purged errors)
[2026-02-02 13:06:46] 2026-02-02 18:06:04,908 | INFO     | overall cleanup function is called
[2026-02-02 13:06:46] 2026-02-02 18:06:05,916 | INFO     | --- collectZombieJob: --- 10, [3250546]
[2026-02-02 13:06:46] 2026-02-02 18:06:05,917 | INFO     | zombie collector waiting for pid 3250546
[2026-02-02 13:06:46] 2026-02-02 18:06:05,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 13:06:46] 2026-02-02 18:06:05,917 | INFO     | collected zombie processes
[2026-02-02 13:06:46] 2026-02-02 18:06:05,917 | INFO     | will attempt to kill all subprocesses of pid=3250546
[2026-02-02 13:06:46] 2026-02-02 18:06:06,072 | INFO     | process IDs to be killed: [3250546] (in reverse order)
[2026-02-02 13:06:46] 2026-02-02 18:06:06,116 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 13:06:46] 2026-02-02 18:06:06,116 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 13:06:46] 2026-02-02 18:06:06,122 | INFO     | did not find any defunct processes belonging to 3250546
[2026-02-02 13:06:46] 2026-02-02 18:06:06,127 | INFO     | did not find any defunct processes belonging to 3250546
[2026-02-02 13:06:46] 2026-02-02 18:06:06,127 | INFO     | ready for new job
[2026-02-02 13:06:46] 2026-02-02 18:06:06,127 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 13:06:46] 2026-02-02 18:06:06,129 | INFO     | **************************************
[2026-02-02 13:06:46] 2026-02-02 18:06:06,129 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 13:06:46] 2026-02-02 18:06:06,129 | INFO     | **************************************
[2026-02-02 13:06:46] 2026-02-02 18:06:06,129 | INFO     | 
[2026-02-02 13:06:46] 2026-02-02 18:06:06,150 | INFO     | architecture information:
[2026-02-02 13:06:46] 2026-02-02 18:06:06,151 | INFO     | executing command: cat /etc/os-release
[2026-02-02 13:06:46] 2026-02-02 18:06:06,164 | INFO     | cat /etc/os-release:
[2026-02-02 13:06:46] NAME="CentOS Linux"
[2026-02-02 13:06:46] VERSION="7 (Core)"
[2026-02-02 13:06:46] ID="centos"
[2026-02-02 13:06:46] ID_LIKE="rhel fedora"
[2026-02-02 13:06:46] VERSION_ID="7"
[2026-02-02 13:06:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 13:06:46] ANSI_COLOR="0;31"
[2026-02-02 13:06:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 13:06:46] HOME_URL="https://www.centos.org/"
[2026-02-02 13:06:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 13:06:46] 
[2026-02-02 13:06:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 13:06:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 13:06:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 13:06:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 13:06:46] 
[2026-02-02 13:06:46] 2026-02-02 18:06:06,164 | INFO     | **************************************
[2026-02-02 13:06:46] 2026-02-02 18:06:06,667 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-02-02 13:06:46] 2026-02-02 18:06:06,678 | INFO     | sufficient remaining disk space (374493675520 B)
[2026-02-02 13:06:46] 2026-02-02 18:06:06,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 13:06:46] 2026-02-02 18:06:06,679 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 13:06:46] 2026-02-02 18:06:06,679 | INFO     | update_server=False
[2026-02-02 13:06:46] 2026-02-02 18:06:06,679 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 13:06:46] 2026-02-02 18:06:06,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 13:06:46] 2026-02-02 18:06:06,679 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 13:06:46] 2026-02-02 18:06:06,680 | INFO     | aborting loop
[2026-02-02 13:06:46] 2026-02-02 18:06:06,988 | INFO     | all payload control threads have been joined
[2026-02-02 13:06:46] 2026-02-02 18:06:07,390 | INFO     | all job control threads have been joined
[2026-02-02 13:06:46] 2026-02-02 18:06:07,626 | INFO     | all data control threads have been joined
[2026-02-02 13:06:46] 2026-02-02 18:06:07,684 | INFO     | [job] job monitor thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:07,684 | INFO     | [job] retrieve thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:07,685 | INFO     | [job] queue monitor thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:07,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 13:06:46] 2026-02-02 18:06:07,977 | INFO     | [payload] failed_post thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:07,991 | INFO     | [payload] control thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:08,071 | INFO     | [job] validate thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:08,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 13:06:46] 2026-02-02 18:06:08,355 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:08,356 | INFO     | [payload] validate_post thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:08,396 | INFO     | [job] control thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:08,429 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:08,627 | INFO     | [data] control thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:08,659 | INFO     | [data] copytool_in thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:09,163 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:09,940 | INFO     | [data] copytool_out thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:12,160 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:17,136 | INFO     | job.realtimelogging is not enabled
[2026-02-02 13:06:46] 2026-02-02 18:06:18,140 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 13:06:46] 2026-02-02 18:06:37,358 | INFO     | PID=3245739 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 13:06:46] 2026-02-02 18:06:37,358 | INFO     | .. there are 2 such processes running
[2026-02-02 13:06:46] 2026-02-02 18:06:37,358 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 13:06:46] 2026-02-02 18:06:37,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 13:06:46] 2026-02-02 18:06:37,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 13:06:46] 2026-02-02 18:06:40,335 | INFO     | [monitor] cgroup control has ended
[2026-02-02 13:06:46] 2026-02-02 18:06:41,769 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326356735808)>', '<ExcThread(monitor, started 140325699970816)>']
[2026-02-02 13:06:46] 2026-02-02 18:06:42,383 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 13:06:46] 2026-02-02 18:06:42,384 | INFO     | [monitor] control thread has ended
[2026-02-02 13:06:46] 2026-02-02 18:06:46,791 | INFO     | all workflow threads have been joined
[2026-02-02 13:06:46] 2026-02-02 18:06:46,792 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 13:06:46] 2026-02-02 18:06:46,792 | INFO     | traces error code: 0
[2026-02-02 13:06:46] 2026-02-02 18:06:46,792 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 13:06:46] 2026-02-02 18:06:46,898 [wrapper] ==== pilot stdout END ====
[2026-02-02 13:06:46] 2026-02-02 18:06:46,900 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 13:06:46] 2026-02-02 18:06:46,901 [wrapper] pilotpid: 3245739
[2026-02-02 13:06:46] 2026-02-02 18:06:46,902 [wrapper] Pilot exit status: 0
[2026-02-02 13:06:46] 2026-02-02 18:06:46,909 [wrapper] pandaids: 6995420015
[2026-02-02 13:06:46] 2026-02-02 18:06:46,939 [wrapper] cleanup supervisor_pilot 3280904 3245740
[2026-02-02 13:06:46] 2026-02-02 18:06:46,942 [wrapper] Test setup, not cleaning
[2026-02-02 13:06:46] 2026-02-02 18:06:46,944 [wrapper] apfmon messages muted
[2026-02-02 13:06:46] 2026-02-02 18:06:46,946 [wrapper] ==== wrapper stdout END ====
[2026-02-02 13:06:46] 2026-02-02 18:06:46,947 [wrapper] ==== wrapper stderr END ====
[2026-02-02 13:06:46]  *** Error codes and diagnostics ***
[2026-02-02 13:06:46]     "exeErrorCode": 0,
[2026-02-02 13:06:46]     "exeErrorDiag": "",
[2026-02-02 13:06:46]     "pilotErrorCode": 0,
[2026-02-02 13:06:46]     "pilotErrorDiag": "",
[2026-02-02 13:06:46]  *** Listing of results directory ***
[2026-02-02 13:06:47] total 671028
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc    584422 Feb  1 03:53 pilot3.tar.gz
[2026-02-02 13:06:47] -rwx------ 1 boinc boinc     36322 Feb  1 03:54 runpilot2-wrapper.sh
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc      5111 Feb  1 03:56 queuedata.json
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc       100 Feb  2 11:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 13:06:47] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 11:56 run_atlas
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc       105 Feb  2 11:56 job.xml
[2026-02-02 13:06:47] -rw-r--r-- 2 boinc boinc     15845 Feb  2 11:56 start_atlas.sh
[2026-02-02 13:06:47] drwxrwx--x 2 boinc boinc      4096 Feb  2 11:56 shared
[2026-02-02 13:06:47] -rw-r--r-- 2 boinc boinc    597764 Feb  2 11:56 input.tar.gz
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc      7579 Feb  2 11:56 init_data.xml
[2026-02-02 13:06:47] -rw-r--r-- 2 boinc boinc 490995386 Feb  2 11:56 EVNT.48317889._000126.pool.root.1
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc         0 Feb  2 11:56 boinc_lockfile
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc      2521 Feb  2 11:57 pandaJob.out
[2026-02-02 13:06:47] -rw------- 1 boinc boinc        50 Feb  2 11:57 setup.sh.local
[2026-02-02 13:06:47] -rw------- 1 boinc boinc   1009772 Feb  2 11:57 agis_schedconf.cvmfs.json
[2026-02-02 13:06:47] -rw------- 1 boinc boinc   1511668 Feb  2 11:57 agis_ddmendpoints.agis.ALL.json
[2026-02-02 13:06:47] -rw------- 1 boinc boinc       429 Feb  2 11:57 workernode_map.json
[2026-02-02 13:06:47] drwx------ 5 boinc boinc      4096 Feb  2 11:57 pilot3
[2026-02-02 13:06:47] -rw------- 1 boinc boinc 190142156 Feb  2 13:05 HITS.48317892._006469.pool.root.1
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc       530 Feb  2 13:05 boinc_task_state.xml
[2026-02-02 13:06:47] -rw------- 1 boinc boinc      1030 Feb  2 13:05 memory_monitor_summary.json
[2026-02-02 13:06:47] -rw------- 1 boinc boinc    403392 Feb  2 13:05 log.48317892._006469.job.log.tgz.1
[2026-02-02 13:06:47] -rw------- 1 boinc boinc      6341 Feb  2 13:06 heartbeat.json
[2026-02-02 13:06:47] -rw------- 1 boinc boinc        95 Feb  2 13:06 pilot_heartbeat.json
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc      8192 Feb  2 13:06 boinc_mmap_file
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc        27 Feb  2 13:06 wrapper_checkpoint.txt
[2026-02-02 13:06:47] -rw------- 1 boinc boinc      4899 Feb  2 13:06 pilotlog.txt
[2026-02-02 13:06:47] -rw------- 1 boinc boinc    619874 Feb  2 13:06 log.48317892._006469.job.log.1
[2026-02-02 13:06:47] -rw------- 1 boinc boinc       357 Feb  2 13:06 output.list
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc       620 Feb  2 13:06 runtime_log
[2026-02-02 13:06:47] -rw------- 1 boinc boinc   1044480 Feb  2 13:06 result.tar.gz
[2026-02-02 13:06:47] -rw------- 1 boinc boinc       650 Feb  2 13:06 tcqKDmCPi68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmVwPKDmHy7bOo.diag
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc      9403 Feb  2 13:06 runtime_log.err
[2026-02-02 13:06:47] -rw-r--r-- 1 boinc boinc     21425 Feb  2 13:06 stderr.txt
[2026-02-02 13:06:47] HITS file was successfully produced:
[2026-02-02 13:06:47] -rw------- 1 boinc boinc 190142156 Feb  2 13:05 shared/HITS.pool.root.1
[2026-02-02 13:06:47]  *** Contents of shared directory: ***
[2026-02-02 13:06:47] total 666804
[2026-02-02 13:06:47] -rw-r--r-- 2 boinc boinc     15845 Feb  2 11:56 start_atlas.sh
[2026-02-02 13:06:47] -rw-r--r-- 2 boinc boinc    597764 Feb  2 11:56 input.tar.gz
[2026-02-02 13:06:47] -rw-r--r-- 2 boinc boinc 490995386 Feb  2 11:56 ATLAS.root_0
[2026-02-02 13:06:47] -rw------- 1 boinc boinc 190142156 Feb  2 13:05 HITS.pool.root.1
[2026-02-02 13:06:47] -rw------- 1 boinc boinc   1044480 Feb  2 13:06 result.tar.gz
13:06:48 (3241214): run_atlas exited; CPU time 43942.644687
13:06:48 (3241214): called boinc_finish(0)

</stderr_txt>
]]>

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